View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_47 (Length: 261)
Name: NF0912_low_47
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 37558577 - 37558380
Alignment:
| Q |
24 |
gaagggatccttgagtgatttttcagtcattttgaaagccaactccacagctgcattgttgacaaaagaataatttggtagaggtcgcgaagttacaccg |
123 |
Q |
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| T |
37558577 |
gaagggatccttgagtgatttttcagtcattttgaaagccaactccacagctgcattgttgacaaaagaataatttggtagaggttgcgaagttacacca |
37558478 |
T |
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| Q |
124 |
tagtcgtcaccatccacaccaggcatcttgtcatccttctttagattaagaccttgagtgctcttcttttcatccttcttaagaacttcagggctctt |
221 |
Q |
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| T |
37558477 |
tagtcgtcaccatccacaccaggcatcttgtcatccttctttagattaagaccttgagtgctcttcttttcatccttcttaagaacttcagtgctctt |
37558380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 37558399 - 37558347
Alignment:
| Q |
169 |
ttaagaccttgagtgctcttcttttcatccttcttaagaacttcagggctctt |
221 |
Q |
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| T |
37558399 |
ttaagaacttcagtgctcttctgttcatccttcttaagatcttcagtgctctt |
37558347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 41553892 - 41553814
Alignment:
| Q |
28 |
ggatccttgagtgatttttcagtcattttgaaagccaactccacagctgcattgttgacaaaagaataatttggtagag |
106 |
Q |
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| T |
41553892 |
ggatccttggatgttttttctgtcattttgaaagccaagtccgctgctgcactgttgacaaaagagtaatttgatagag |
41553814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 4444789 - 4444886
Alignment:
| Q |
24 |
gaagggatccttgagtgatttttcagtcattttgaaagccaactccacagctgcattgttgacaaaagaataatttggtagaggtcgcgaagttacac |
121 |
Q |
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| T |
4444789 |
gaagggattcttgaatgttttttcagtcatttcaaaagccacgtttgcggctgcgttgttgacaaaagagtaatttgttagaggttgcaaagttacac |
4444886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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