View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_5 (Length: 572)
Name: NF0912_low_5
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 119 - 560
Target Start/End: Complemental strand, 8800594 - 8800151
Alignment:
| Q |
119 |
accaaatatacgtttgatggtggttgaaatctcaagaaccgcatannnnnnnacatttccattcgtgatggaataacccattagtatgtattgattatgc |
218 |
Q |
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| T |
8800594 |
accaaatatacgtttggtggtggttgaaatctcaagaaccacatatttttttacatttccattcgtgatggaataatccattagtctgtattgattatgc |
8800495 |
T |
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| Q |
219 |
caccatgtaacgtcgtgtctcaaaaacttgtagttatgatattatgtgtggcgtgacatcgacttaaacaaatcacgctatcacttaaaataacacatca |
318 |
Q |
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| T |
8800494 |
caccatataatgttgtgtctcaaaaacttgtagttatgatattatgtgtggggtgacatcgatttaaacaaatcacgatatcacttaaattaacacatca |
8800395 |
T |
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| Q |
319 |
acacatctaataaaactaattaacgaagaaacattttgattgacgtaagacaatttagggggataattttatgtttcataaatttcgtgttcaaaattaa |
418 |
Q |
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| T |
8800394 |
acacatctaataaaattaattaacaaagaaacattttgattgacgtaagacaatttaggggaataattttatgtttcataaatttagtgttcaaaa-taa |
8800296 |
T |
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| Q |
419 |
caattacattttcaagac-aaaatgtgatttaatcattaattactattgttcaaaagaaacaaac--tatatcttatagtttcttgtatgctaaaatgag |
515 |
Q |
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| T |
8800295 |
caattacattttcaagacaaaaatgtgatttaatcattaattactattgttcaaaagaaacaaactatatatcttatagtttcttgtatactaaaatgag |
8800196 |
T |
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| Q |
516 |
ttaatttttaatctcgagcaagaagaaaacaaagagagtgagtat |
560 |
Q |
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| T |
8800195 |
ttaatttttaatctcgagcaagaagaaaacaaagagagtgagtat |
8800151 |
T |
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