View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_51 (Length: 253)
Name: NF0912_low_51
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_51 |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 73 - 253
Target Start/End: Complemental strand, 55205916 - 55205735
Alignment:
| Q |
73 |
attcagattaaaaataaacaaaacatcagnnnnnnn-aattaaaaaacaaaatagaggagaaacacgcgcttctcttcttcttctctcgtacatgaactt |
171 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
55205916 |
attcagattaaaaataaacaaaacatcagttttttttaattaaaaaacaaaatagaggagaaacacgcgcttctcttcttcttctctcttacgtgaactt |
55205817 |
T |
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| Q |
172 |
tactcactctctgcttccctcagaatctcttcgtctccccctctcatcagcgccaacaaccaccgattgtgccgccgttcat |
253 |
Q |
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| T |
55205816 |
tactcactctctgcttccctcggaatctcttcgtctccccctctcatcagcgccaacaaccaccgattgtgccgccgttcat |
55205735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 55203379 - 55203449
Alignment:
| Q |
74 |
ttcagattaaaaataaacaaaacatcagnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttc |
144 |
Q |
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| T |
55203379 |
ttcagattaaaaataaacaaaacatcagcttttttaattaaaaaacaaaatagaggagaaacacgcgcttc |
55203449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 253
Target Start/End: Complemental strand, 46513580 - 46513400
Alignment:
| Q |
74 |
ttcagattaaaaataaacaaaacatcagnnnnnnnaattaaaaaacaaaatagaggagaaacacgcgcttctcttcttcttct-ctcgtacatgaacttt |
172 |
Q |
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| T |
46513580 |
ttcagattaaaaataaacaaaacatcagcttttttaattaaaaaaaaaaatagaggagaa-cacgcgcttgtcttct-cttcttctagtacgtgaacgtt |
46513483 |
T |
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| Q |
173 |
actcactctct---gcttccctcagaatctcttcgtctccccctctcatcagcgccaacaaccaccgattgtgccgccgttcat |
253 |
Q |
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| T |
46513482 |
acactctcttttgagcttccctcagaatctcttcgtct-cccctctcaccagcaccaacaaccgccgattgtgtcgccgttcat |
46513400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 46164545 - 46164671
Alignment:
| Q |
132 |
aaacacgcgcttctcttct--tcttctctcgtacatgaactttactcactctct-----gcttccctcagaatctcttcgtctccccctctcatcagcgc |
224 |
Q |
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| T |
46164545 |
aaacacgcgcttctcttctcttcttctttcatacgtgaacgttgcccactctcttttcagcttcccttagaacctcttcgtttccc--tgtcatcagcgc |
46164642 |
T |
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| Q |
225 |
caacaaccaccgattgtgccgccgttcat |
253 |
Q |
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| T |
46164643 |
caacaaccgccgattgtgccgccgttcat |
46164671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 10091686 - 10091753
Alignment:
| Q |
184 |
gcttccctcagaatctcttcgtctccccctctcatcagcgccaacaaccaccgattgtgccgccgttcat |
253 |
Q |
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| T |
10091686 |
gcttccctcaaaacctcttcgtttccc--tctcatcagcgccaacaaccgtcgattgtgccgccgttcat |
10091753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 26339928 - 26339860
Alignment:
| Q |
184 |
gcttccctcagaatctcttcgtctccccctctcatcagcgccaacaaccaccgattgtgccgccgttcat |
253 |
Q |
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| T |
26339928 |
gcttccctcggaatctcttcctctcccc-tctcatcaccgccaacaatcgtcgattattccgccgttcat |
26339860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 48986130 - 48986256
Alignment:
| Q |
132 |
aaacacgcgcttctcttct--tcttctctcgtacatgaactttactcactctct-----gcttccctcagaatctcttcgtctccccctctcatcagcgc |
224 |
Q |
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||||||||||||||||||| |||||| || ||| ||||| |||| |||||||| |||||||| |||| |||||||| |||| | |||||||||| |
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| T |
48986130 |
aaacacgcgcttctcttctcttcttctttcatacgtgaacgttacccactctcttttcagcttcccttagaacctcttcgtttccc--tgtcatcagcgc |
48986227 |
T |
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| Q |
225 |
caacaaccaccgattgtgccgccgttcat |
253 |
Q |
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| T |
48986228 |
caacaaccgccgattgtgtcgccgttcat |
48986256 |
T |
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