View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_52 (Length: 251)
Name: NF0912_low_52
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_52 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 30868510 - 30868270
Alignment:
| Q |
11 |
caaaggaagtgatagggtgtcagagacgaaagttgagaaagacaaaccacatgtcttagaagaaggcaaaaccttaagtgggtagataggagtagatgag |
110 |
Q |
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| T |
30868510 |
caaaggaagtgatagggtgtcagagacgaaagttgagaaagacaaaccacatgtcttagaagaaggcaaaaccttaggtgggtagataggagtagatgag |
30868411 |
T |
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| Q |
111 |
catccagaaaaatgaaaattttcaagatctcatcaaagctctagaaaagtttatggttagtatgctcataaaagaaatggtcgaaaaaagccattgttgt |
210 |
Q |
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| T |
30868410 |
catccagaaaaatgaaaattttcaagatctcatcaaagctctagaaaagtttacggttaatatgctcataaaagaaatggtcgaaaaaagcccttgttgt |
30868311 |
T |
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| Q |
211 |
atgaaattcttgcaagagatcctaaagctggtcgaggaggc |
251 |
Q |
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| T |
30868310 |
atgaaattcttgtaagagatcctgaagctggtcgaggaggc |
30868270 |
T |
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Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 24839426 - 24839643
Alignment:
| Q |
15 |
ggaagtgatagggtgtcagagacgaaagttgagaaagacaaaccacatgtcttagaagaaggcaaaaccttaagtgggtagataggagtagatgagcatc |
114 |
Q |
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| T |
24839426 |
ggaagtaatagggtgtctgagacgaaagtcgaggaagacacaccacatgtcttagaagaagacaagaccttaggtggggagataggagttggtgagtacc |
24839525 |
T |
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| Q |
115 |
cagaaaaatgaaaattttcaagatctcatcaaagctctagaaaagtttatggttagtatgctcataaaagaaatggtcgaaaaaagccattgttgtatga |
214 |
Q |
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| T |
24839526 |
cagaaaaa-gaaaattttcaagatctcatcaaagctttagaaaagtataaagctaatatacccatgaaagaaatggtcgaaaagcgcccctgttgtttaa |
24839624 |
T |
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| Q |
215 |
aattcttgcaagagatcct |
233 |
Q |
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| T |
24839625 |
aattcttgtaggagatcct |
24839643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 19698982 - 19698862
Alignment:
| Q |
119 |
aaaatgaaaattttcaagatctcatcaaagctctagaaaagtttatggttagtatgctcataaaagaaatggtcgaaaaaagccattgttgtatgaaatt |
218 |
Q |
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| T |
19698982 |
aaaatggaaattttcaagatctcataaaagctttagaaaaatttaaagtca-tatgcccataaaagaaatggtcgaacaaagttcttgttgtatgaaatt |
19698884 |
T |
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| Q |
219 |
cttgcaagagatcctaaagctg |
240 |
Q |
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| T |
19698883 |
cttgtaggtgatcctaaagctg |
19698862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 23517579 - 23517380
Alignment:
| Q |
18 |
agtgatagggtgtcagagacgaaagttgagaaagacaaaccacatgtcttagaagaaggcaaaaccttaagtgggtagataggagtagatgagcatccag |
117 |
Q |
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| T |
23517579 |
agtgatagggtgtcagagacaaaagttgagaaagacacaccacatgccttagaaaaaggcaagaccttaggttgggagaaaagagttcatgggcagcaag |
23517480 |
T |
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| Q |
118 |
aaaaatgaaaattttcaagatctcatcaaagctctagaaaagtttatggttagtatgctcataaaagaaatggtcgaaaaaagccattgttgtatgaaat |
217 |
Q |
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| T |
23517479 |
-agaatggagattttcaagatctcatcaaagttctataacagtttaaagttaatatgcccataaaataaatggtcgaaaagagtcccttttgtatgaaat |
23517381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 23513249 - 23513046
Alignment:
| Q |
17 |
aagtgatagggtgtcagagacgaaagttgagaaagacaaaccacatgtcttagaagaaggcaaaaccttaagtgggtagataggagtagatgagcatcca |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||| || ||||| ||||||| ||||||| |||||| || || ||| | |||| ||| ||| | | |
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| T |
23513249 |
aagtgatagggtgtcagagacaaaagttgagaaagacacactacatgccttagaaaaaggcaagaccttaggttgggagaaaagagttcatgggcagcaa |
23513150 |
T |
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| Q |
117 |
gaaaaatgaaaattttcaagatctcatcaaagctctagaaaagtttatggttagtatgctcataaaagaaatggtcgaaaaaagccattgttgtatgaaa |
216 |
Q |
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| T |
23513149 |
gagaattgaga--ttttaaaatctcatcaaagttctataacagtttaaagttaatatgcccataaaataaatggtcaaaaagagtcccttttgtatgaaa |
23513052 |
T |
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| Q |
217 |
ttcttg |
222 |
Q |
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|||||| |
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| T |
23513051 |
ttcttg |
23513046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 15578170 - 15578048
Alignment:
| Q |
118 |
aaaaatgaaaattttcaagatctcatcaaagctctagaaaagtttatggttagtatgctcataaaagaaatggtcgaaaaaagccattgttgtatgaaat |
217 |
Q |
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|||||||||||||||||||| ||| | |||||| |||||||| ||| | | ||| | ||| |||||||| |||||||| || |||||||||||||||| |
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| T |
15578170 |
aaaaatgaaaattttcaagagctcgttaaagctttagaaaagattaaagcaaatatacccatcaaagaaattgtcgaaaagagtcattgttgtatgaaat |
15578071 |
T |
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| Q |
218 |
tcttgcaagagatcctaaagctg |
240 |
Q |
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| T |
15578070 |
ttttgcaggagatcctgaagctg |
15578048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 18499223 - 18499335
Alignment:
| Q |
119 |
aaaatgaaaattttcaagatctcatcaaagctctagaaaagtttatggttagtatgctcataaaagaaatggtcgaaaaaagccattgttgtatgaaatt |
218 |
Q |
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|||| |||||||||||||| |||||||||| |||||||||||| |||| |||| ||| ||||||||||||||| ||| | |||||| |||||||| |
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| T |
18499223 |
aaaaagaaaattttcaagagctcatcaaagtgttagaaaagtttaaagttaacatgcccatcaaagaaatggtcgaacaaattccttgttgcatgaaatt |
18499322 |
T |
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| Q |
219 |
cttgcaagagatc |
231 |
Q |
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| T |
18499323 |
tcttcaagagatc |
18499335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 14419556 - 14419628
Alignment:
| Q |
119 |
aaaatgaaaattttcaagatctcatcaaagctctagaaaagtttatggttagtatgctcataaaagaaatggt |
191 |
Q |
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|||||||||||||| |||| |||||||||||| |||||||||||| || | |||| |||| ||||||||||| |
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| T |
14419556 |
aaaatgaaaatttttaagagctcatcaaagctttagaaaagtttaaagtaaatatgttcatcaaagaaatggt |
14419628 |
T |
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