View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0912_low_59 (Length: 226)

Name: NF0912_low_59
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0912_low_59
NF0912_low_59
[»] chr6 (3 HSPs)
chr6 (48-130)||(22063651-22063733)
chr6 (49-130)||(25966153-25966235)
chr6 (69-129)||(23520340-23520400)
[»] chr4 (3 HSPs)
chr4 (48-130)||(15349984-15350066)
chr4 (48-130)||(14687924-14688006)
chr4 (48-92)||(18290067-18290111)
[»] chr3 (2 HSPs)
chr3 (48-130)||(6812853-6812935)
chr3 (48-130)||(3247230-3247312)
[»] chr1 (2 HSPs)
chr1 (48-130)||(27044876-27044958)
chr1 (55-130)||(21786602-21786677)
[»] chr7 (6 HSPs)
chr7 (48-130)||(542115-542197)
chr7 (48-130)||(14223760-14223842)
chr7 (48-130)||(13633625-13633707)
chr7 (48-130)||(13740305-13740387)
chr7 (73-130)||(16327869-16327926)
chr7 (72-130)||(4310615-4310673)
[»] chr8 (3 HSPs)
chr8 (48-130)||(20000290-20000372)
chr8 (48-130)||(45562723-45562805)
chr8 (48-130)||(8213-8294)
[»] chr2 (3 HSPs)
chr2 (50-130)||(25361343-25361423)
chr2 (50-130)||(44998223-44998303)
chr2 (84-130)||(26922028-26922074)
[»] scaffold0566 (1 HSPs)
scaffold0566 (48-130)||(584-666)
[»] scaffold0222 (1 HSPs)
scaffold0222 (48-130)||(17823-17905)
[»] scaffold0035 (1 HSPs)
scaffold0035 (48-130)||(52686-52768)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 22063651 - 22063733
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22063651 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggttttgattggtggtaaatgtttggaatgatga 22063733  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 25966235 - 25966153
Alignment:
Q  49 ggttagggttaaatagtgta-gaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||| |||| ||| ||||| |||||||||||||| ||||||||  ||||  |||||||| ||||  ||||||||||||||||    
T  25966235 ggttatggtttaatggtgtacgaatttggtgtttggatggatgaaagttgattttgattgatggtttatgtttggaatgatga 25966153  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 23520340 - 23520400
Alignment:
Q  69 gaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatg 129  Q
    |||||||| ||||| |||||||| |||||| |||||| | ||||  |||||||||||||||    
T  23520340 gaatttggggtttggatggatgaatgttggttttgatggttggtttatgtttggaatgatg 23520400  T

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Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 15349984 - 15350066
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15349984 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggttttgattggtggtaaatgtttggaatgatga 15350066  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 14687924 - 14688006
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||| |||||| ||| |||||||||||||||||||||||||||    
T  14687924 gggttagggtttaatggtgtagaatttggtgtttggatggatgaatgttggttttaattggtggtaaatgtttggaatgatga 14688006  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 18290111 - 18290067
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgat 92  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||    
T  18290111 gggttagggtttaatggtgtagaatttggtgtttggatggatgat 18290067  T

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Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 6812935 - 6812853
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6812935 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggttttgattggtggtaaatgtttggaatgatga 6812853  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 3247230 - 3247312
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||| |||||| | ||||||||| | |||||||||||||||||    
T  3247230 gggttagggtttaatggtgtagaatttggtgtttggatggatgaatgttggttgtgattggtgtttaatgtttggaatgatga 3247312  T

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Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 27044958 - 27044876
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27044958 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggttttgattggtggtaaatgtttggaatgatga 27044876  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 21786602 - 21786677
Alignment:
Q  55 ggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    |||| ||| ||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||    
T  21786602 ggtttaatggtgtagaatttggtgtttggatggatgaatgttggttttgattggtagtaaatgtttggaatgatga 21786677  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 542115 - 542197
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  542115 gggttagggttaaatagtgtagaatttggtgtttgaatggatgaatgttggttttgattggtggtaaatgtttggaatgatga 542197  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 14223760 - 14223842
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  14223760 gggttagggttaaatggtgtagaatttggtgtttaaatggatgaatgttggttttgattggtggtaaatgtttggaatgatga 14223842  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 13633707 - 13633625
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    |||||||| || ||| ||||||||||||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||||    
T  13633707 gggttaggttttaatggtgtagaatttggtgtttggatggatgaatgttggttttgattggtggttaatgtttggaatgatga 13633625  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 13740387 - 13740305
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    |||||||| || ||| ||||||||||||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||||    
T  13740387 gggttaggttttaatggtgtagaatttggtgtttggatggatgaatgttggttttgattggtggttaatgtttggaatgatga 13740305  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 16327869 - 16327926
Alignment:
Q  73 ttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  16327869 ttggtgtttgaatggatgaatgttggttttgattggtggtaaatgtttggaatgatga 16327926  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 4310673 - 4310615
Alignment:
Q  72 tttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||| |||||||| |||||| |||||||||||||  ||||||||||||||||    
T  4310673 tttggtgtttggatggatgaatgttggttttgattggtggtttatgtttggaatgatga 4310615  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 20000372 - 20000290
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  20000372 gggttagggttaaatggtgtagaatttggtgtttgaatggatgaatgttggttttgattggtggtaaatgtttggaatgatga 20000290  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 45562723 - 45562805
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||  ||||| ||||||||||||| |||||||||||||||||    
T  45562723 gggttagggtttaatggtgtagaatttggtgtttggatggatgaaagttggttttgattggtggttaatgtttggaatgatga 45562805  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 8213 - 8294
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||  ||| | ||||||||||||| |||||||||||||||||    
T  8213 gggttagggtttaatggtgtagaatttggtgtttggatggatgaaagtt-gttttgattggtggttaatgtttggaatgatga 8294  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 25361423 - 25361343
Alignment:
Q  50 gttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||| ||| ||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  25361423 gttagggtttaatggtgtagaatttggtgtttggatggatgaatgttggttttgattggtggtaaatgtttggaatgatga 25361343  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 44998303 - 44998223
Alignment:
Q  50 gttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||  ||||| ||||||||||||| |||||||| ||||||||    
T  44998303 gttagggtttaatggtgtagaatttggtgtttggatggatgaaagttggttttgattggtggttaatgtttgaaatgatga 44998223  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 26922074 - 26922028
Alignment:
Q  84 atggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  26922074 atggatgaatgttggttttgattggtggtaaatgtttggaatgatga 26922028  T

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Target: scaffold0566 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 666 - 584
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||| ||| ||||| ||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  666 gggttagggtttaatggtgtaaaatttggtgtttggatggatgaatgttggttttgattggtggtaaatgtttggaatgatga 584  T

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Target: scaffold0222 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 17905 - 17823
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||||| ||| ||||| ||||||||||||| |||||||| |||||  |||||||||||||||||||||||||||||||    
T  17905 gggttagggtttaatggtgtacaatttggtgtttggatggatgaatgttgattttgattggtggtaaatgtttggaatgatga 17823  T

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Target: scaffold0035 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 52686 - 52768
Alignment:
Q  48 gggttagggttaaatagtgtagaatttggtgtttgaatggatgattgttggatttgattggtggtaaatgtttggaatgatga 130  Q
    ||||||||| | ||| || |||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||    
T  52686 gggttagggattaatggtttagaatttggtgtttggatggatgaatgttggttttgattggtggtaaatggttggaatgatga 52768  T

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