View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_6 (Length: 491)
Name: NF0912_low_6
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 25 - 484
Target Start/End: Complemental strand, 7296550 - 7296085
Alignment:
| Q |
25 |
catcaaaatccaactatagaagggtgttctgaaaggtagaaattaagggtttgaatcaccttgaatgcatcatccatggtgatggagagggttccgtcgg |
124 |
Q |
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| T |
7296550 |
catcgaaatccaactatagaagggtgttctgaaaggtagaaattaagggtttgaatcaccttgaatgcattatccatggtgatggagagggttccgtcgg |
7296451 |
T |
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| Q |
125 |
aggattacggagactcctctccttgtattttatgttctaattactttgttctttattttgaatgataaaatgatatatatagaagnnnnnnnnnnnnnnn |
224 |
Q |
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| T |
7296450 |
aggattacggagactcctctccttgtattttatgttctaattactttgttctttattttgaatgacaaaatgatatatatagaagatttttttttttttt |
7296351 |
T |
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| Q |
225 |
---aaagacatatagttaatacttgactcattaaccgaggagaagtattagggaaattcgacctaaatataaacaacaacaacac---tcacctaaaata |
318 |
Q |
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| T |
7296350 |
tttaaagaaatatagttaatacttgactcatcaactgaggagaagtatcaaggatattcgacctaaatataaacaacaacaacaacaatcacctaaaata |
7296251 |
T |
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| Q |
319 |
acatataaaggaaggggttcgaaaagtactcgtaatacaaacatgaaccaccttcgtagaattttctattttgtgacatattgttggagatgattttaga |
418 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| |
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| T |
7296250 |
acatataaaggaaggggttcgaaaagcactcgtaatacaaacatgaaccaccttcgtagaattttctattttttgacattttgttgaagatgattttaga |
7296151 |
T |
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| Q |
419 |
aagagaggttaaatttgtggcctattatagggttgccgttgtttgtttgtggtgtaatattgttgg |
484 |
Q |
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| T |
7296150 |
aagagaggttaaatttgtggcctattatagggttgccgttgtttgtttgtggtgtaatattgttgg |
7296085 |
T |
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