View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0912_low_67 (Length: 203)
Name: NF0912_low_67
Description: NF0912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0912_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 20064417 - 20064513
Alignment:
| Q |
3 |
agtttcattccaaataaacacttcaactatattttcgcgtataacagcactagaagagaaactcccaacagatggatctgaagggtttttccatgat |
99 |
Q |
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| T |
20064417 |
agtttcattccaaataaacacttcaagtatattttggcgttcaacactactagaggagaaactcccaacagatggatcggaaggacttttccatgat |
20064513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 20301989 - 20301891
Alignment:
| Q |
3 |
agtttcattccaaataaacacttcaactatattttcgcgtataacagcactagaagagaaactcccaacagatggatctgaagggtttttccatgatgt |
101 |
Q |
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| T |
20301989 |
agtttcattccaaataaacacttcaagtatatttccgcgttcaacactactagaagaaaaaatcccgacagatggatcagaagggcttttccatgatgt |
20301891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 20229828 - 20229727
Alignment:
| Q |
3 |
agtttcattccaaataaacacttcaactatattttcgcgtataacagcactagaagagaaactcccaacagatggatctgaagggtttttccatgatgtg |
102 |
Q |
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| T |
20229828 |
agtttcattccaaataaacacttcaaatatattttggcgttgaacgctattacaagagaagttgccaacagaggggtcagaagggcttttccatgatgtg |
20229729 |
T |
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| Q |
103 |
ag |
104 |
Q |
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| T |
20229728 |
ag |
20229727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 20241778 - 20241677
Alignment:
| Q |
3 |
agtttcattccaaataaacacttcaactatattttcgcgtataacagcactagaagagaaactcccaacagatggatctgaagggtttttccatgatgtg |
102 |
Q |
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| T |
20241778 |
agttccattccaaataaacacttcaagtatacttaggcgttcaacagtactagcagagaagttgccaacagaggggtcagaagggcttttccatgatgtg |
20241679 |
T |
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| Q |
103 |
ag |
104 |
Q |
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|| |
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| T |
20241678 |
ag |
20241677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 20262411 - 20262310
Alignment:
| Q |
3 |
agtttcattccaaataaacacttcaactatattttcgcgtataacagcactagaagagaaactcccaacagatggatctgaagggtttttccatgatgtg |
102 |
Q |
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| T |
20262411 |
agtttcattccaaataaacacttcaaatatattttggcgttcaacgctattacaagagaagttgccaacagaggggtcagaagggcttttccatgatgtg |
20262312 |
T |
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| Q |
103 |
ag |
104 |
Q |
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|| |
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| T |
20262311 |
ag |
20262310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 20287352 - 20287315
Alignment:
| Q |
67 |
ccaacagatggatctgaagggtttttccatgatgtgag |
104 |
Q |
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| T |
20287352 |
ccaacagatggatctgaagggtttttccatgatgtgag |
20287315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 40825786 - 40825823
Alignment:
| Q |
67 |
ccaacagatggatctgaagggtttttccatgatgtgag |
104 |
Q |
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| T |
40825786 |
ccaacagatggatctgaagggtttttccatgatgtgag |
40825823 |
T |
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