View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_high_10 (Length: 525)
Name: NF0913_high_10
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_high_10 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 461
Target Start/End: Complemental strand, 6145441 - 6145003
Alignment:
| Q |
7 |
ggagcagagagaatggtgtgaattagttcttaattttacattgattaaattctaaaatttcatctaatgatggctggaatactatatatgtttgcatgta |
106 |
Q |
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| T |
6145441 |
ggagcagggagaatggtgtgaattagttcttaattttacattgattaaattctaaaatttcatctaatgatggctggaatactatatatgtttgcatgta |
6145342 |
T |
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| Q |
107 |
gtaaagttgtataatgtgtaaaattggtttttaattctgtgttagttactttgctttgaactgatttgaagaataatcatagaatattgtggttgcttat |
206 |
Q |
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| T |
6145341 |
gtaaagttgtataatatgtaaatttggtttttaattgtgtgttagttactttgctttgaactgatttgaagaataatcatagaatattgtggttgcttat |
6145242 |
T |
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| Q |
207 |
gattcaagtcaagagttttctatttatctctataaagattatatgtaatatttcacaagaaaattatgagtattttcaatgc-aaaagtaccacattctc |
305 |
Q |
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| T |
6145241 |
gattcaagtcaagagttttctatttatctctataaagattatatgtaatatttcacaagaaaattatgagtattttcaatgcaaaaagtaccacattctc |
6145142 |
T |
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| Q |
306 |
ttaatttttgtactaacatagtaacataccaatcttgtactgcggtgcccatgaaaagagtataagttgacaaaacgtaacatacggggaaagtccttgt |
405 |
Q |
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| T |
6145141 |
ttaattt----------------acataccaatcttgtactgcggtgcccatgaaaatagtataagttgacaaaacgtaacattcgggg-aagtccttgt |
6145059 |
T |
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| Q |
406 |
tctcctttctcgacaatagttcgccacggtagatcgaaagtcctatataaggaggt |
461 |
Q |
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| T |
6145058 |
tctcctttctcgacaatagttcgccaaggtagatcgaaagtcctatataaggaggt |
6145003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 352 - 452
Target Start/End: Complemental strand, 11596 - 11496
Alignment:
| Q |
352 |
gcccatgaaaagagtataagttgacaaaacgtaacatacggggaaagtccttgttctcctttctcgacaatagttcgccacggtagatcgaaagtcctat |
451 |
Q |
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||||||||||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
11596 |
gcccatgaaaatagtatatgttgacaaaacgtaacattaggggaaagtccttgttgtcctttctcgacgacagttcgccaaggtagatcgaaagtcctat |
11497 |
T |
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| Q |
452 |
a |
452 |
Q |
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| T |
11496 |
a |
11496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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