View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_high_12 (Length: 513)
Name: NF0913_high_12
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 100 - 492
Target Start/End: Complemental strand, 40452912 - 40452520
Alignment:
| Q |
100 |
ggccacttaatttgagagggtgttattgtgtgaactactagcaaggattcatatcatatcatataaaatcaatgcattttcaagtcattaagatgatgta |
199 |
Q |
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| T |
40452912 |
ggccacttaatttgagacggtgttattgtgtgaactactagcaaggattcatatcatatcatataaaatcaatgcattttcaagtcattaagatgatgta |
40452813 |
T |
|
| Q |
200 |
tgtattactgaggttcatcaagcttgcagcagttattctcaatttgctcctccttaaatcaagtttgtttcttaatgactcactcataattttcataaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
40452812 |
tgtattactgaggttcatcaagcttgcagcagttattctcaatttgctcctccttaaatcaattttgtttcttaacgactcactcataattttcataaat |
40452713 |
T |
|
| Q |
300 |
tatgctccatatgaggtgaattttgattgcaaaaggattaagttggtgtgtattttgattaacgagcctcgttgcgtaagttaacaagtaatggactaaa |
399 |
Q |
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| T |
40452712 |
tatgctccatatgaggtgaattttgattgcaaaagtattaagttggtgtgtattttgattaacgagcctcgttgcataagttaacaagtaatggactaaa |
40452613 |
T |
|
| Q |
400 |
ttgaaggacaaatatagagtttttgacaacctgttttggccaatttgttaaggggttcggtagttcgttaatattgtgtgtttgattatactg |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40452612 |
ttgaaggacaaatatagagtttttgacaacctgttttggccaatttgttaaggggttcggtagttcgttaatattgtgtgtttgattatactg |
40452520 |
T |
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