View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_high_16 (Length: 459)
Name: NF0913_high_16
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 30 - 433
Target Start/End: Complemental strand, 32203611 - 32203208
Alignment:
| Q |
30 |
cttattaacatttacatgaatacctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgctttt |
129 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203611 |
cttatttacatttacatgaatacctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgctttt |
32203512 |
T |
|
| Q |
130 |
gcattgcagggccggccacactcgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttg |
229 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203511 |
gcattgcaggaccggccacactcgagagactgcttgatgtcatgttcagcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttg |
32203412 |
T |
|
| Q |
230 |
cagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataa |
329 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203411 |
cagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataa |
32203312 |
T |
|
| Q |
330 |
atgataaatcagtttcctacaaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggtt |
429 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203311 |
atgataaatcagtttcctacaaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggtt |
32203212 |
T |
|
| Q |
430 |
aatt |
433 |
Q |
| |
|
|||| |
|
|
| T |
32203211 |
aatt |
32203208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 30 - 433
Target Start/End: Original strand, 35566382 - 35566784
Alignment:
| Q |
30 |
cttattaacatttacatgaatacctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgctttt |
129 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35566382 |
cttatttacatttacatgaatacctcttccttctccttcattaagcccctcaactttgagccgtctggccaatacttccccaacaacagcagctgctttt |
35566481 |
T |
|
| Q |
130 |
gcattgcagggccggccacactcgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttg |
229 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35566482 |
gcatt-cagggccggccacactcgagagactgcttgatgtcatgttctgcggtggatgatgttgctactattcgtccgctgtttcgatctaccacatttg |
35566580 |
T |
|
| Q |
230 |
cagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35566581 |
cagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaaatcaagcacataa |
35566680 |
T |
|
| Q |
330 |
atgataaatcagtttcctacaaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggtt |
429 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35566681 |
atgataaatcagtttcctacgaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttgatacacagaggtt |
35566780 |
T |
|
| Q |
430 |
aatt |
433 |
Q |
| |
|
|||| |
|
|
| T |
35566781 |
aatt |
35566784 |
T |
|
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