View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0913_high_20 (Length: 407)
Name: NF0913_high_20
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 48439184 - 48438785
Alignment:
| Q |
1 |
accctggtgaggaagtcttctctggttccacctgcaaacaaggtgagattgaagctgttgtcatcgccactggtgttcataccttctttggaaaggctgc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48439184 |
accctggtgatgaagtcttctctggttccacctgcaaacaaggtgagattgaagctgttgtcatcgccactggtgttcataccttctttggaaaggctgc |
48439085 |
T |
|
| Q |
101 |
tcaccttgttgatagcactaacaatgttggtcacttccaaaaggtacacttttgtgnnnnnnnnnnagttttgtataagttactagcaagtgttttctta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48439084 |
tcaccttgttgatagcactaacaatgttggtcacttccaaaaggtacacttttgtgttttttttttagttttgtataagttactagcaagtgttttctta |
48438985 |
T |
|
| Q |
201 |
atttgatttattcgacgactctagactatatggactaatctttggatattatttgattggattctattaggtgttgacatcaattggaaacttctgtatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48438984 |
atttgatttattcgacgactctagactatatggactaatctttggatattatttgattggattctattaggtgttgacatcaattggaaacttctgtatc |
48438885 |
T |
|
| Q |
301 |
tgctccattgcagtaggaatgttgattgagattattgtgatgtacccaatccaacaaagatcatatagagaaggtattgacaatttgctggttcatctca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48438884 |
tgctccattgcagtaggaatgttgattgagattattgtgatgtacccaatccaacaaagatcatatagagaaggtattgacaatttgctggttcttctca |
48438785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 44530469 - 44530594
Alignment:
| Q |
21 |
tctggttccacctgcaaacaaggtgagattgaagctgttgtcatcgccactggtgttcataccttctttggaaaggctgctcaccttgttgatagcacta |
120 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||| || ||||| || ||||||||||||||||| || || || |||||||||||||| |||| || | |
|
|
| T |
44530469 |
tctggttctacctgcaaacaaggagagatcgaaggcgtggtcatagctactggtgttcatacctttttcggtaaagctgctcaccttgtagatactacaa |
44530568 |
T |
|
| Q |
121 |
acaatgttggtcacttccaaaaggta |
146 |
Q |
| |
|
|| | ||||||||||||||| ||||| |
|
|
| T |
44530569 |
accaagttggtcacttccaacaggta |
44530594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 21982717 - 21982572
Alignment:
| Q |
1 |
accctggtgaggaagtcttctctggttccacctgcaaacaaggtgagattgaagctgttgtcatcgccactggtgttcataccttctttggaaaggctgc |
100 |
Q |
| |
|
|||||||| | || |||||||||||||| || ||||| |||||||| || || ||| ||||||| ||||||||||| || ||||||||||| |||||||| |
|
|
| T |
21982717 |
accctggtcaagaggtcttctctggttcaacttgcaagcaaggtgaaatcgaggctattgtcattgccactggtgtccacaccttctttgggaaggctgc |
21982618 |
T |
|
| Q |
101 |
tcaccttgttgatagcactaacaatgttggtcacttccaaaaggta |
146 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21982617 |
acaccttgttgatagcaccaacaatgttggtcacttccaaaaggta |
21982572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 266 - 400
Target Start/End: Complemental strand, 21982307 - 21982173
Alignment:
| Q |
266 |
attaggtgttgacatcaattggaaacttctgtatctgctccattgcagtaggaatgttgattgagattattgtgatgtacccaatccaacaaagatcata |
365 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||| ||||||| || ||||||||||| || |||||| | ||| | || |
|
|
| T |
21982307 |
attaggtgttgacatccattggtaacttctgtatctgctcaattgctgtgggaatggtgattgaaatcattgtgatgtatcccatccaaaatagagctta |
21982208 |
T |
|
| Q |
366 |
tagagaaggtattgacaatttgctggttcatctca |
400 |
Q |
| |
|
||||| ||||||||||| ||| |||||| ||||| |
|
|
| T |
21982207 |
cagagatggtattgacaacttgttggttcttctca |
21982173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 45199556 - 45199478
Alignment:
| Q |
69 |
actggtgttcataccttctttggaaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggtac |
147 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||||| | || || ||||||||| | |||||||| ||||||||||||| |
|
|
| T |
45199556 |
actggtgtgcacaccttctttggtaaggctgctcatttggtcgacagcactaaccaagttggtcatttccaaaaggtac |
45199478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 3152574 - 3152644
Alignment:
| Q |
33 |
tgcaaacaaggtgagattgaagctgttgtcatcgccactggtgttcataccttctttggaaaggctgctca |
103 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| || || ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
3152574 |
tgcaagcaaggagagatagaagctgttgttattgcgactggagttcataccttctttggcaaggctgctca |
3152644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 694 times since January 2019
Visitors: 6705