View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_high_23 (Length: 375)
Name: NF0913_high_23
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 38656151 - 38656417
Alignment:
| Q |
51 |
aaaagtttacaccgtgcaaaataagtatgtgtgtatttgttgtaccttgtgaaaatggattcttcca-----------cacgtgagagagtaaagtctga |
139 |
Q |
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| T |
38656151 |
aaaagtttacaccgtgcaaaataagtatgtgtgtatttgttctaccttgtgaaaatggattcttccatgtgtaatttacacgtgagagagtaaagtctga |
38656250 |
T |
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| Q |
140 |
ttcatcacaattcatcaagtgagagaaatatagaggaatttagataaatcgaatttggatggtgatagttaacactttactctttcatgtgtaaattaca |
239 |
Q |
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| T |
38656251 |
ttcatcacaattcatcaagtaagagaaatatagaggaatttagataaattaaatttggatggtgataattaacactttactctttcatgtgtaaattaca |
38656350 |
T |
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| Q |
240 |
aatgagagaatccatttccataacatgtaattataaaaaagtgtaactctcaaaacaactaatgtgt |
306 |
Q |
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| T |
38656351 |
aatgagagaattcatttccataacatataattataaaaaagtgtaactctcaaaacaactaatgtgt |
38656417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 38656408 - 38656445
Alignment:
| Q |
326 |
actaatgggtttttatttgttacccgtgtattcatatt |
363 |
Q |
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| T |
38656408 |
actaatgtgtttttatttgttatccgtgtattcatatt |
38656445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 49655389 - 49655310
Alignment:
| Q |
176 |
aatttagataaatcgaatttggatggtgatagttaacactttactctttcatgtgtaaattacaaatgagagaatccatt |
255 |
Q |
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| T |
49655389 |
aatttagacaaagtgaatttgaatggtgagagatgacactttactctcttatgtgtaaattacatctgtgagaatccatt |
49655310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 3229109 - 3229153
Alignment:
| Q |
211 |
acactttactctttcatgtgtaaattacaaatgagagaatccatt |
255 |
Q |
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| T |
3229109 |
acactttattctctcatgtgtaaattacacatgagaggatccatt |
3229153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 17429201 - 17429153
Alignment:
| Q |
211 |
acactttactctttcatgtgtaaattacaaatgagagaatccatttcca |
259 |
Q |
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| T |
17429201 |
acactttagtatctcatgagtaaattacacatgagagaatccatttcca |
17429153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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