View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_high_33 (Length: 317)

Name: NF0913_high_33
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_high_33
NF0913_high_33
[»] chr4 (2 HSPs)
chr4 (8-189)||(29057878-29058069)
chr4 (228-265)||(22255673-22255710)
[»] chr7 (1 HSPs)
chr7 (197-303)||(29060658-29060765)
[»] chr1 (2 HSPs)
chr1 (197-270)||(48835016-48835089)
chr1 (213-250)||(49420160-49420197)
[»] chr3 (2 HSPs)
chr3 (197-270)||(33455700-33455773)
chr3 (77-129)||(11354172-11354222)
[»] chr5 (1 HSPs)
chr5 (17-189)||(35431508-35431678)
[»] chr6 (2 HSPs)
chr6 (17-52)||(34607568-34607603)
chr6 (213-265)||(29647387-29647439)
[»] chr8 (2 HSPs)
chr8 (213-263)||(35840465-35840515)
chr8 (228-265)||(5433644-5433681)
[»] chr2 (1 HSPs)
chr2 (213-265)||(30545370-30545422)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 29058069 - 29057878
Alignment:
Q  8 tcctccggtaaagcagtgaactatgataattgagatatgaaataattgaaataaaggaaagcttaaaataaaatggcagaaatatataggattggtggat 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  29058069 tcctccgataaagcagtgaactatgataattgagatatgaaataattgaaataaagaaaagcttaaaataaaatggcagaaatatataggtttggtggat 29057970  T
Q  108 gaagattatcatcatcaatag----------atagaagatgtacttttaacataatagctaaccgtgttaaattgaaaggggagatgtttat 189  Q
    |||||||||||||||||||||          ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  29057969 gaagattatcatcatcaatagaatcagaaaaatagaagatgtacttttaacagaataactaaccgtgttaaattgaaaggggagatgtttat 29057878  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 22255710 - 22255673
Alignment:
Q  228 acagaccatcataaaatatgtgctactccttaatctaa 265  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  22255710 acagaccatcataaaatatgtgctcctctttaatctaa 22255673  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 303
Target Start/End: Original strand, 29060658 - 29060765
Alignment:
Q  197 gaagatgatgtgtggaaaatatatggtgtgaacagaccatcataaaatatgtgctactccttaatctaaccgtt-nnnnnnnttttcccatggtgggaaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||         |||||||||||||||||    
T  29060658 gaagatgatgtgtggaaaatatatggtgtgaacagaccatcataaaatatgcgctactccttaatctaaccgttaaaaaaaactttcccatggtgggaaa 29060757  T
Q  296 caattccc 303  Q
    ||||||||    
T  29060758 caattccc 29060765  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 48835016 - 48835089
Alignment:
Q  197 gaagatgatgtgtggaaaatatatggtgtgaacagaccatcataaaatatgtgctactccttaatctaaccgtt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48835016 gaagatgatgtgtggaaaatatatggtgtgaacagaccatcataaaatatgagctactccttaatctaaccgtt 48835089  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 49420197 - 49420160
Alignment:
Q  213 aaatatatggtgtgaacagaccatcataaaatatgtgc 250  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  49420197 aaatatatggtgtggacagaccatcataaaatgtgtgc 49420160  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 33455700 - 33455773
Alignment:
Q  197 gaagatgatgtgtggaaaatatatggtgtgaacagaccatcataaaatatgtgctactccttaatctaaccgtt 270  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33455700 gaagatgatgtgtggaatatatatggtgtgaacagaccatcataaaatatgtgttactccttaatctaaccgtt 33455773  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 11354172 - 11354222
Alignment:
Q  77 aaaatggcagaaatatataggattggtggatgaagattatcatcatcaataga 129  Q
    |||||||||||||||||  || || ||||||||||||||||||||||||||||    
T  11354172 aaaatggcagaaatata--ggtttagtggatgaagattatcatcatcaataga 11354222  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 35431678 - 35431508
Alignment:
Q  17 aaagcagtgaactatgataattgagatatgaaataattgaaataaaggaaagcttaaaataaaatggcagaaatatataggattggtggatgaagattat 116  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| || |||||||| |  ||||||||||||  ||||||| || ||||| |||||||||    
T  35431678 aaagcagtgaactatgataattgagatttgaaataatttaaatatagaaaagcttata--aaaatggcagaa--atataggtttagtggacgaagattat 35431583  T
Q  117 catcatcaataga----tagaagatgtacttttaacataatagctaaccgtgttaaattgaaaggggagatgtttat 189  Q
     || |  || |||    |||  ||| |||| |||||| ||||| |||| |||||||||||||||||||  |||||||    
T  35431582 tatga--aacagaaaagtaggggatttactcttaacagaatagttaacggtgttaaattgaaaggggacgtgtttat 35431508  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 34607568 - 34607603
Alignment:
Q  17 aaagcagtgaactatgataattgagatatgaaataa 52  Q
    ||||||||||||||||||||| ||||||||||||||    
T  34607568 aaagcagtgaactatgataatcgagatatgaaataa 34607603  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 29647439 - 29647387
Alignment:
Q  213 aaatatatggtgtgaacagaccatcataaaatatgtgctactccttaatctaa 265  Q
    |||||||||||||| | | |||||||||||||||||||  ||| |||||||||    
T  29647439 aaatatatggtgtggagaaaccatcataaaatatgtgcacctctttaatctaa 29647387  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 35840465 - 35840515
Alignment:
Q  213 aaatatatggtgtgaacagaccatcataaaatatgtgctactccttaatct 263  Q
    |||||||||||||| ||||||||||||||||| |||||  ||| |||||||    
T  35840465 aaatatatggtgtggacagaccatcataaaatgtgtgcacctctttaatct 35840515  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 5433644 - 5433681
Alignment:
Q  228 acagaccatcataaaatatgtgctactccttaatctaa 265  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  5433644 acagaccatcataaaatatgtgctcctctttaatctaa 5433681  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 30545370 - 30545422
Alignment:
Q  213 aaatatatggtgtgaacagaccatcataaaatatgtgctactccttaatctaa 265  Q
    |||||||||||||| ||| ||||||||||||| |||||  ||| |||||||||    
T  30545370 aaatatatggtgtggacaaaccatcataaaatgtgtgcacctctttaatctaa 30545422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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