View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_high_45 (Length: 285)

Name: NF0913_high_45
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_high_45
NF0913_high_45
[»] chr3 (13 HSPs)
chr3 (97-285)||(2546915-2547103)
chr3 (123-285)||(16218739-16218902)
chr3 (123-277)||(10726101-10726255)
chr3 (149-278)||(15539176-15539307)
chr3 (100-285)||(27052563-27052748)
chr3 (123-275)||(10934612-10934766)
chr3 (139-275)||(15045084-15045220)
chr3 (185-276)||(19631848-19631938)
chr3 (182-278)||(19614544-19614640)
chr3 (226-283)||(8853207-8853264)
chr3 (185-240)||(19659757-19659812)
chr3 (198-278)||(4814001-4814081)
chr3 (124-251)||(11832826-11832953)
[»] chr2 (4 HSPs)
chr2 (123-285)||(21654331-21654493)
chr2 (158-275)||(24282069-24282187)
chr2 (123-164)||(27353776-27353817)
chr2 (168-285)||(28774348-28774465)
[»] chr1 (6 HSPs)
chr1 (103-271)||(22615307-22615476)
chr1 (108-285)||(20407979-20408157)
chr1 (123-285)||(23475693-23475855)
chr1 (168-273)||(21219238-21219343)
chr1 (186-277)||(21719819-21719910)
chr1 (182-275)||(21402739-21402832)
[»] chr7 (9 HSPs)
chr7 (123-278)||(11773863-11774018)
chr7 (159-271)||(3170146-3170257)
chr7 (139-278)||(8323849-8323988)
chr7 (168-278)||(8327078-8327187)
chr7 (158-285)||(20910390-20910517)
chr7 (123-211)||(13761542-13761631)
chr7 (192-285)||(29731245-29731339)
chr7 (192-285)||(29741608-29741702)
chr7 (190-281)||(29741056-29741148)
[»] chr5 (6 HSPs)
chr5 (139-285)||(24194321-24194468)
chr5 (185-278)||(26727851-26727944)
chr5 (139-285)||(19859300-19859446)
chr5 (123-285)||(19316283-19316446)
chr5 (100-238)||(10176536-10176675)
chr5 (200-275)||(17169737-17169812)
[»] chr6 (8 HSPs)
chr6 (103-285)||(19977118-19977301)
chr6 (168-285)||(14566446-14566563)
chr6 (158-258)||(18557542-18557641)
chr6 (182-237)||(9520827-9520882)
chr6 (175-285)||(16308547-16308657)
chr6 (139-284)||(23294112-23294263)
chr6 (235-285)||(19725333-19725383)
chr6 (190-231)||(19970102-19970143)
[»] scaffold0184 (1 HSPs)
scaffold0184 (168-285)||(10667-10784)
[»] scaffold0007 (1 HSPs)
scaffold0007 (103-278)||(204620-204796)
[»] scaffold0530 (1 HSPs)
scaffold0530 (108-283)||(3103-3270)
[»] chr4 (7 HSPs)
chr4 (128-275)||(17959999-17960146)
chr4 (174-278)||(11776353-11776448)
chr4 (123-285)||(15711541-15711704)
chr4 (131-285)||(16571312-16571465)
chr4 (168-285)||(21982077-21982194)
chr4 (139-230)||(15692359-15692451)
chr4 (235-275)||(28800996-28801036)
[»] scaffold0190 (1 HSPs)
scaffold0190 (123-285)||(1833-1997)
[»] scaffold0205 (1 HSPs)
scaffold0205 (123-275)||(927-1079)
[»] scaffold0964 (1 HSPs)
scaffold0964 (123-272)||(2302-2451)
[»] chr8 (2 HSPs)
chr8 (168-266)||(21695239-21695336)
chr8 (158-275)||(24625007-24625124)
[»] scaffold0193 (1 HSPs)
scaffold0193 (168-275)||(18961-19068)
[»] scaffold0039 (1 HSPs)
scaffold0039 (168-251)||(8019-8102)
[»] scaffold0185 (1 HSPs)
scaffold0185 (139-258)||(1077-1198)
[»] scaffold1114 (1 HSPs)
scaffold1114 (182-285)||(2016-2117)
[»] scaffold0004 (1 HSPs)
scaffold0004 (183-275)||(371249-371341)
[»] scaffold0417 (1 HSPs)
scaffold0417 (168-264)||(3759-3855)
[»] scaffold0014 (1 HSPs)
scaffold0014 (123-211)||(202756-202845)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 97 - 285
Target Start/End: Original strand, 2546915 - 2547103
Alignment:
Q  97 agtagttaaactgaagccaaaattatgattcttgaagactaaaggtaagggagatggtttcctttcatagctaagttataatctattattttcaattatg 196  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2546915 agtagctaaactgaagccaaaattatgattcttgaagactaaaggtaagggagatggtttcctttcatagctaagttataatctattattttcaattatg 2547014  T
Q  197 ggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547015 ggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 2547103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 123 - 285
Target Start/End: Original strand, 16218739 - 16218902
Alignment:
Q  123 gattcttgaagactaaaggtaagggagatggtttccttt-catagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattg 221  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||  |||| |||||||| ||||||||||||| | |||||||||||||| |||| ||||    
T  16218739 gattcttgaagactagaggtaagggggatggtttccttttcataattaagctataatctcttattttcaattacgagtttaagtgcttttgtgttaattg 16218838  T
Q  222 tgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
     ||||||| |||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||    
T  16218839 agacttttatgatttttgattgatgaaattcatgctcctaattcaagtgaatttgtgggtatga 16218902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 277
Target Start/End: Complemental strand, 10726255 - 10726101
Alignment:
Q  123 gattcttgaagactaaaggtaagggagatggtttcctttcatagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgt 222  Q
    ||||||||||||||| ||||||||| | ||||| | ||||||   ||||| ||||||| |||||||||||||||| |||||||| ||||||| | |||||    
T  10726255 gattcttgaagactagaggtaagggggttggttgcttttcatgattaagtcataatcttttattttcaattatggttttaagtgtttttatgataattgt 10726156  T
Q  223 gactttt-gtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgt 277  Q
    ||||||| |||| ||||| ||||||||||| |||||||||||||| || |||||||    
T  10726155 gacttttggtga-ttttggatgatgaaattcgtgctcctaattcatgttaatttgt 10726101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 278
Target Start/End: Complemental strand, 15539307 - 15539176
Alignment:
Q  149 gatggtttccttt-catagctaagttataatctattattttcaattatgggttt-aagtgcttttatgtttattgtgacttttgtgatttttgaatgatg 246  Q
    ||||||||||||| ||||  |||  ||||||||  |||||| |||||||||||| |||||||||| |||| | ||||||||||||||||||||||| |||    
T  15539307 gatggtttccttttcataattaacctataatcttctatttttaattatgggttttaagtgcttttttgttaactgtgacttttgtgatttttgaataatg 15539208  T
Q  247 aaatttgtgctcctaattcaagtgaatttgtg 278  Q
    |||||||||||||||||||| |||||||||||    
T  15539207 aaatttgtgctcctaattcatgtgaatttgtg 15539176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 285
Target Start/End: Complemental strand, 27052748 - 27052563
Alignment:
Q  100 agttaaactgaagccaaaattatgattcttgaagactaaaggtaagggagatggtttcctttcat-agctaagttataatctattattttcaattatggg 198  Q
    ||||||| |||||| | | || ||||||||||||| || ||||||||| ||||||||| |||||| |  ||||| | ||| ||||||||||||||||| |    
T  27052748 agttaaagtgaagctagagttttgattcttgaagattagaggtaaggg-gatggtttcttttcatcaaataagtcacaatgtattattttcaattatgag 27052650  T
Q  199 tttaagtgcttttatgtttattgtgactttt-gtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    |||||||| |||| || | |||||||||||| ||| |||| ||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  27052649 tttaagtgattttgtgataattgtgactttttgtggtttt-gaatgatgaaattcgtgctcctaattcatgtgaatttgtgggtatga 27052563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 123 - 275
Target Start/End: Complemental strand, 10934766 - 10934612
Alignment:
Q  123 gattcttgaaga-ctaaaggtaagggagatggtttcctttca-tagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttatt 220  Q
    |||||||||||| ||  ||||||||| ||||||||| ||||| ||  ||||| ||||||||||||||||||||||| |||||| ||||| | |||| |||    
T  10934766 gattcttgaagaacttgaggtaagggggatggtttcttttcactaattaagtcataatctattattttcaattatgagtttaaatgcttatgtgttaatt 10934667  T
Q  221 gtga-cttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaattt 275  Q
    |||| ||||||||  ||||||||||||||||| |||||||||||||| ||||||||    
T  10934666 gtgaccttttgtg-gttttgaatgatgaaattcgtgctcctaattcatgtgaattt 10934612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 139 - 275
Target Start/End: Original strand, 15045084 - 15045220
Alignment:
Q  139 aggtaagggagatggtttccttt-catagctaagttataatctattattttcaattatggg-tttaagtgcttttatgtttattgtgacttttgtgattt 236  Q
    ||||||||| ||||||||||||| || |  |||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||  |||||||||||    
T  15045084 aggtaagggggatggtttccttttcacatttaagctataatctactattttcaattatgggatttaagtgcttttatgttaattgtggattttgtgattt 15045183  T
Q  237 ttgaatgatgaaatttgtgctcctaattcaagtgaattt 275  Q
    ||  ||| |||| || |||||| ||||||| || |||||    
T  15045184 tt--atgttgaatttcgtgctcataattcatgtaaattt 15045220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 19631848 - 19631938
Alignment:
Q  185 ttttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttg 276  Q
    |||||||||||| |||||||||||||| |||| |||||| ||||||||||||||| || ||||| || |||||||||||||| |||||||||    
T  19631848 ttttcaattatgagtttaagtgcttttgtgttaattgtggcttttgtgatttttg-ataatgaatttcgtgctcctaattcatgtgaatttg 19631938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 19614640 - 19614544
Alignment:
Q  182 ttattttcaattatgggtttaagtgcttttatgtttattgtgac-ttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtg 278  Q
    |||||||||||||||| ||||| ||||||| |||| |||||||| |||||| ||||||| |||||||| || |||||||||||||| |||||||||||    
T  19614640 ttattttcaattatggatttaaatgcttttgtgttaattgtgactttttgtcatttttg-atgatgaatttcgtgctcctaattcatgtgaatttgtg 19614544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 8853207 - 8853264
Alignment:
Q  226 ttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtat 283  Q
    ||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||    
T  8853207 ttttgtgatttttgaatgatgaaattcatggtcctaattcaagtgaatttgtgtgtat 8853264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 19659757 - 19659812
Alignment:
Q  185 ttttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttga 240  Q
    |||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||    
T  19659757 ttttcaattatgagttttagtgcttttgtgttaattgtgacttttgtgatttttga 19659812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 4814081 - 4814001
Alignment:
Q  198 gtttaagtgcttttatgtttattgtgactttt-gtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtg 278  Q
    ||||||||||||||||| | |||||||||||| ||| |||| ||||||||||||| ||||||| | |||| ||||| |||||    
T  4814081 gtttaagtgcttttatgataattgtgactttttgtggtttt-gaatgatgaaattcgtgctcccatttcatgtgaaattgtg 4814001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 11832826 - 11832953
Alignment:
Q  124 attcttgaagactaaaggtaagggagatggtttcctttcatagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtg 223  Q
    ||||||||||| || ||||||||| ||| || || |||||    |||| |||||||| ||| ||||  ||||| |||||||||||||| || | ||||||    
T  11832826 attcttgaagaatagaggtaagggggatagtctcttttcactattaagctataatctcttaatttctcttatgtgtttaagtgcttttgtgataattgtg 11832925  T
Q  224 actt-ttgtgatttttgaatgatgaaatt 251  Q
    |||| |||||  |||||||||||||||||    
T  11832926 acttcttgtg-gttttgaatgatgaaatt 11832953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 123 - 285
Target Start/End: Complemental strand, 21654493 - 21654331
Alignment:
Q  123 gattcttgaagactaaaggtaagggagatggtttcctttcatagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgt 222  Q
    ||||||||||||||| ||||||| | |||| || | |||||||  |||| |||||||| |||||||||||||||||||||| | ||||| |||| |||||    
T  21654493 gattcttgaagactagaggtaagagggatgattccttttcataattaagctataatctcttattttcaattatgggtttaactacttttgtgttaattgt 21654394  T
Q  223 gacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21654393 gactattgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgggtatga 21654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 24282187 - 24282069
Alignment:
Q  158 ctttcatagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtga-tttttgaatgatgaaatttgtgc 256  Q
    ||||||||  ||||| |||||||| | |||||| ||||| ||||||||  |||| || | ||||| |||||| ||  |||||||||||| ||||| ||||    
T  24282187 ctttcataattaagtcataatctagtcttttcacttatgagtttaagttattttgtgataattgtaacttttttgtgtttttgaatgataaaattcgtgc 24282088  T
Q  257 tcctaattcaagtgaattt 275  Q
    || ||||||| ||||||||    
T  24282087 tcttaattcatgtgaattt 24282069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 27353817 - 27353776
Alignment:
Q  123 gattcttgaagactaaaggtaagggagatggtttcctttcat 164  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  27353817 gattcttgaagactagaggtaagggggatggtttcctttcat 27353776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 28774465 - 28774348
Alignment:
Q  168 taagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgac-ttttgtgatttttgaatgatgaaatttgtgctcctaattca 266  Q
    |||| |||||||| ||| ||||| ||||| |||| |||||||||||  | |||||||| |||||||  |||||||||||  |||||||||| ||| || |    
T  28774465 taagctataatctcttaatttcacttatgagtttcagtgcttttatagtaattgtgactttttgtg-gttttgaatgatagaatttgtgcttctatttta 28774367  T
Q  267 agtgaatttgtgagtatga 285  Q
     ||||| ||||| ||||||    
T  28774366 tgtgaaattgtgggtatga 28774348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 103 - 271
Target Start/End: Complemental strand, 22615476 - 22615307
Alignment:
Q  103 taaactgaagccaaaattatgattcttgaagactaaaggtaagggagatggtttccttt-catagctaagttataatctattattttcaattatgggttt 201  Q
    |||| ||||| |||| ||| ||||||||||||||| ||||||||| ||||||||||||| ||||| |||| |||||||| ||||||| ||||||| ||||    
T  22615476 taaagtgaagtcaaagttaggattcttgaagactagaggtaagggggatggtttccttttcatagttaagctataatctcttattttaaattatgagttt 22615377  T
Q  202 aagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtga 271  Q
    ||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  22615376 aagtgtttttgtgttaattctgacttttgtgatttttgaatgatgaaatttgtgctctcaattcaagtga 22615307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 108 - 285
Target Start/End: Complemental strand, 20408157 - 20407979
Alignment:
Q  108 tgaagccaaaattatgattcttgaagactaaaggtaagggagatggtttcctttcat-agctaagttataatctattattttcaattatgggtttaagtg 206  Q
    |||||||||| ||| ||||||| ||||||| ||||||||| ||||||||| ||| || |  ||||| ||||||| |||||||||||||||  ||||||||    
T  20408157 tgaagccaaagttaggattctttaagactagaggtaagggggatggtttctttttatcaattaagtcataatctcttattttcaattatgattttaagtg 20408058  T
Q  207 cttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    ||||| |||| |||||||||||||| | ||||||||||| ||||| |||| ||||||||||||||||||||| ||||||    
T  20408057 cttttgtgttaattgtgacttttgttagttttgaatgataaaattcgtgcccctaattcaagtgaatttgtgggtatga 20407979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 123 - 285
Target Start/End: Original strand, 23475693 - 23475855
Alignment:
Q  123 gattcttgaagactaaaggtaagggagatggtttcctttcat-agctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattg 221  Q
    |||||||||||| || ||||||||| ||||||||| |||| | || ||||| ||||||||||| ||||||||||||||||||||| |||| || | |||     
T  23475693 gattcttgaagattagaggtaagggggatggtttcttttcttcagttaagtcataatctattactttcaattatgggtttaagtgtttttgtgataatta 23475792  T
Q  222 tgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    |||||||||||  ||||||||||||||||| ||||||  | |||| ||||| ||||| ||||||    
T  23475793 tgacttttgtg-gttttgaatgatgaaattcgtgctctcatttcatgtgaaattgtgggtatga 23475855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 21219238 - 21219343
Alignment:
Q  168 taagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaa 267  Q
    ||||| ||||| ||| ||||||||||||| |||||||||||||| || | ||||||||||||   | ||||||||||||||||||||||||||||||||     
T  21219238 taagtcataatttataattttcaattatgagtttaagtgcttttgtgataattgtgactttttgtagttttgaatgatgaaatttgtgctcctaattcat 21219337  T
Q  268 gtgaat 273  Q
    ||||||    
T  21219338 gtgaat 21219343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 21719910 - 21719819
Alignment:
Q  186 tttcaattatgggtttaagtgcttttatgtttattgtgactttt-gtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgt 277  Q
    ||||||||||||||||||||| ||||||||| |||||| ||||| |||||||||  |||||||| || |||||||||||||| ||||||||||    
T  21719910 tttcaattatgggtttaagtggttttatgttaattgtgtcttttggtgattttt-tatgatgaatttcgtgctcctaattcatgtgaatttgt 21719819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 21402832 - 21402739
Alignment:
Q  182 ttattttcaattatgggtttaagtgcttttatgtttattgtgac-ttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaattt 275  Q
    ||||||||||||||||||||||||  |||| || | |||||||| |||||||| |||||||||||||| || |||||| ||||||| || |||||    
T  21402832 ttattttcaattatgggtttaagtatttttgtgataattgtgactttttgtga-ttttgaatgatgaatttcgtgctcataattcatgtaaattt 21402739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 123 - 278
Target Start/End: Original strand, 11773863 - 11774018
Alignment:
Q  123 gattcttgaagactaaaggtaagggagatggtttcctttcat-agctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattg 221  Q
    ||||||||||||||| ||||||| | |||| ||||||||||| |  ||||| |||||||  |||||||||||||||| ||||||| |||| |||| ||||    
T  11773863 gattcttgaagactagaggtaagagggatg-tttcctttcatcaattaagtcataatcttctattttcaattatgggattaagtgattttgtgttaattg 11773961  T
Q  222 tgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtg 278  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11773962 tgacttttgtgatttttgaatgatgaaattcgtgctcctaattcaagtgaatttgtg 11774018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 3170146 - 3170257
Alignment:
Q  159 tttcatagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctc 258  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||||| ||||| |||||||| || ||||||    
T  3170146 tttcataactaagctataatctcttattttcaattatgggtttaagttcttttatgttaattgtgatttttgtgaattttg-atgatgaatttcgtgctc 3170244  T
Q  259 ctaattcaagtga 271  Q
     ||||||| ||||    
T  3170245 ttaattcatgtga 3170257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 278
Target Start/End: Original strand, 8323849 - 8323988
Alignment:
Q  139 aggtaagggagatggtttcctttcat-agctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttt 237  Q
    ||||||||| ||||||||| |||||| |  ||||| ||| ||| ||| |||| ||||||||||||| |||||||||||| ||||||  ||| || |||||    
T  8323849 aggtaagggggatggtttcttttcattatttaagtcatagtctcttaatttctattatgggtttaattgcttttatgttaattgtgtttttggtaatttt 8323948  T
Q  238 tgaatgatgaaatttgtgctcctaattcaagtgaatttgtg 278  Q
      | ||||||| ||||||||||||||||| |||||||||||    
T  8323949 cca-tgatgaattttgtgctcctaattcatgtgaatttgtg 8323988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 8327078 - 8327187
Alignment:
Q  168 taagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaa 267  Q
    ||||| ||||||| ||| |||||||||||| |||||||||||||||||| ||||||  |||||  | ||||  |||||||| || ||||||||||||||     
T  8327078 taagtcataatctcttaatttcaattatggatttaagtgcttttatgttaattgtg-tttttggtaattttccatgatgaatttcgtgctcctaattcat 8327176  T
Q  268 gtgaatttgtg 278  Q
    |||||||||||    
T  8327177 gtgaatttgtg 8327187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 285
Target Start/End: Original strand, 20910390 - 20910517
Alignment:
Q  158 ctttcatagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttg-tgatttttgaatgatgaaatttgtgc 256  Q
    ||||||||  ||||| ||||||  |||||  |||||||| |||||| ||||||| || | ||||| ||||||  ||||||| ||||||||||||||||||    
T  20910390 ctttcataattaagtcataatcacttattaacaattatgagtttaattgcttttgtgataattgttactttttatgatttt-gaatgatgaaatttgtgc 20910488  T
Q  257 tcctaattcaagtgaatttgtgagtatga 285  Q
    |||||||||| |||||||| || ||||||    
T  20910489 tcctaattcatgtgaatttatgggtatga 20910517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 13761542 - 13761631
Alignment:
Q  123 gattcttgaagactaaaggtaagggagatggtttcctttca-tagctaagttataatctattattttcaattatgggtttaagtgctttt 211  Q
    |||||||||||| ||||||||| || ||| ||||| ||||| ||  ||||||||||||| ||| ||||| ||||||||||||||| ||||    
T  13761542 gattcttgaagattaaaggtaaaggggatagtttcttttcactaattaagttataatctcttaatttcacttatgggtttaagtgttttt 13761631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 29731339 - 29731245
Alignment:
Q  192 ttatgggtttaagtgcttttatgtttattgtgactttt--gtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    |||||||||||||||||||| || | ||||||||||||  |||  ||||||||||| ||||| || |||||| |||| ||| | ||||||||||||    
T  29731339 ttatgggtttaagtgcttttgtgataattgtgactttttggtg-gttttgaatgataaaattcgtactcctatttcatgtggaattgtgagtatga 29731245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 29741608 - 29741702
Alignment:
Q  192 ttatgggtttaagtgcttttatgtttattgtgactttt--gtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    |||||||||||||||||||| || | ||||||||||||  |||  ||||||||||| ||||| || |||||| |||| ||| | ||||||||||||    
T  29741608 ttatgggtttaagtgcttttgtgataattgtgactttttggtg-gttttgaatgataaaattcgtactcctatttcatgtggaattgtgagtatga 29741702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 29741056 - 29741148
Alignment:
Q  190 aattatgggtttaagtgcttttatgtttattgtgactttt--gtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagt 281  Q
    |||||||||||||||||||||| || | ||||||||||||  |||| ||| ||||||| || || ||||||||| |||| ||| | ||||||||    
T  29741056 aattatgggtttaagtgcttttgtgataattgtgactttttggtga-tttcgaatgataaatttcgtgctcctatttcatgtggaattgtgagt 29741148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 139 - 285
Target Start/End: Complemental strand, 24194468 - 24194321
Alignment:
Q  139 aggtaagggagatggtttcctttcat-agctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttt 237  Q
    ||||||||  ||||||||| |||||| |  ||||| |||||||  |||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||    
T  24194468 aggtaaggaggatggtttcttttcatcaattaagtcataatcttatattttcaattatgagtttaagtgcttttatgttaattgtgatttttgagatttt 24194369  T
Q  238 tgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  24194368 tgaatgatgaaattcgtgctcctaattcaagtgaatttgtgggtatga 24194321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 26727944 - 26727851
Alignment:
Q  185 ttttcaattatgggttt-aagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtg 278  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | |||||||  || |||||||||||||| |||||||||||    
T  26727944 ttttcaattatgggttttaagtgcttttatgttaattgtgacttttgtgattttcg-atgatgagtttcgtgctcctaattcatgtgaatttgtg 26727851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 19859300 - 19859446
Alignment:
Q  139 aggtaagggagatggtttcctttc-atagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttt 237  Q
    ||||||||| | |||||||||||  |||  |||| |||||||| |||||||||||||||| |||||||| ||||||||| ||| |||||||||||| | |    
T  19859300 aggtaaggggggtggtttcctttttataattaagctataatctcttattttcaattatggatttaagtgtttttatgttaattatgacttttgtgaatat 19859399  T
Q  238 tgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    || |||||||| || |||||| ||||||| ||||| || || ||||||    
T  19859400 tg-atgatgaatttcgtgctcttaattcatgtgaaattatgggtatga 19859446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 285
Target Start/End: Original strand, 19316283 - 19316446
Alignment:
Q  123 gattcttgaagactaaaggtaagggagatggtttcctttcat-agctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattg 221  Q
    |||||||||||| || ||||||||| |||||| || |||||| |  ||||| ||||| || |||||||||||||| |||||| ||||||| || | ||||    
T  19316283 gattcttgaagattataggtaagggggatggtctcttttcatcaattaagtcataatttagtattttcaattatgtgtttaaatgcttttgtgataattg 19316382  T
Q  222 tgac-ttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    |||| |||||||  ||||||||||| ||||| ||||||||| |||| ||||| || || ||||||    
T  19316383 tgactttttgtg-gttttgaatgataaaattcgtgctcctatttcatgtgaaattttgggtatga 19316446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 10176536 - 10176675
Alignment:
Q  100 agttaaactgaagccaaaattatgattcttgaagactaaaggtaagggagatggtttcc-tttcatagctaagttataatctattattttcaattatggg 198  Q
    |||||||  ||||||||| ||| ||||||| ||||||| |||| |||| | |||||||| |||||||  |||| ||||||||  |||||||||||||| |    
T  10176536 agttaaatggaagccaaagttaggattcttcaagactagaggttaggggggtggtttccttttcataattaagctataatctcctattttcaattatgcg 10176635  T
Q  199 tttaagtgcttttatgtttattgtgacttttgtgattttt 238  Q
      ||| ||||| | |||  |||||||||||||||| ||||    
T  10176636 aataaatgcttatttgtgaattgtgacttttgtgaatttt 10176675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 17169812 - 17169737
Alignment:
Q  200 ttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaattt 275  Q
    |||||||||||| | |  |||||||||||||||| |||||||||||||  ||  ||||||||||||||||||||||    
T  17169812 ttaagtgcttttgtctcaattgtgacttttgtgaattttgaatgatgactttcatgctcctaattcaagtgaattt 17169737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 19977118 - 19977301
Alignment:
Q  103 taaactgaagccaaaattatgattcttgaagactaaaggtaagggagatggtttcctttcat-agctaagttataatctattattttcaattatgggttt 201  Q
    |||| ||||| |||| ||| ||||| | ||||||| |||||||||||||||||||||||||| |  ||||| |||||||  || ||||||||||||||||    
T  19977118 taaagtgaagacaaagttaggattcataaagactataggtaagggagatggtttcctttcatcaattaagtaataatcttctaatttcaattatgggttt 19977217  T
Q  202 aagtgcttttatgtttattgtgactttt-gtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    ||||||||||||||| |||||||||||| ||||| |||| |||||||| || ||||||||||| || ||||||||||| ||||||    
T  19977218 aagtgcttttatgttaattgtgacttttggtgatctttg-atgatgaatttcgtgctcctaatgcatgtgaatttgtgggtatga 19977301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 14566446 - 14566563
Alignment:
Q  168 taagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgactttt-gtgatttttgaatgatgaaatttgtgctcctaattca 266  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| || | |||| ||||||| ||| |||| ||||||||||||||||||||||||||||    
T  14566446 taagtcataatctattattttcaattatgagtttaagtgcttttgtgataattgagactttttgtggtttt-gaatgatgaaatttgtgctcctaattca 14566544  T
Q  267 agtgaatttgtgagtatga 285  Q
     ||||||||||| ||||||    
T  14566545 tgtgaatttgtgggtatga 14566563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 18557641 - 18557542
Alignment:
Q  158 ctttcatagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgct 257  Q
    ||||||||  ||||| |||||||| |||||||| ||||||||||| || ||||| || | ||||| |||||| ||  |||||||||||||||||||||||    
T  18557641 ctttcataattaagtcataatctagtattttcacttatgggtttaggtacttttgtgataattgtaactttt-tgtgttttgaatgatgaaatttgtgct 18557543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 9520882 - 9520827
Alignment:
Q  182 ttattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttt 237  Q
    ||||||| |||||||||||||||||||||| |||  ||||||||||||||||||||    
T  9520882 ttatttttaattatgggtttaagtgcttttgtgtgaattgtgacttttgtgatttt 9520827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 16308547 - 16308657
Alignment:
Q  175 taatctattattttcaattatgggtttaagtgcttttatgtttattgtgactttt-gtgatttttgaatgatgaaatttgtgctcctaattcaagtgaat 273  Q
    |||||||  ||||||||||||  |||||||||||||| || | ||||| |||||| ||| |||| |||||||||||||  ||||||||||||| | ||||    
T  16308547 taatctaccattttcaattataagtttaagtgcttttgtgataattgttactttttgtggtttt-gaatgatgaaattcatgctcctaattcatgagaat 16308645  T
Q  274 ttgtgagtatga 285  Q
    ||||| ||||||    
T  16308646 ttgtgggtatga 16308657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 284
Target Start/End: Original strand, 23294112 - 23294263
Alignment:
Q  139 aggtaagggagatggtttcctttcatagct-aagttataatctattattttcaattatgggtttaagtgc------ttttatgtttattgtgacttttgt 231  Q
    ||||||||||||| | ||||||||||   | ||| |||||||| |||||||||||| | |||||||||||      |||| |||| ||||||| ||||||    
T  23294112 aggtaagggagatagattcctttcatcaatgaagctataatcttttattttcaattgtaggtttaagtgctttaatttttgtgttaattgtgaattttgt 23294211  T
Q  232 gatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatg 284  Q
    |||||||| |||||||| | |||| || ||||||| ||| | || ||||||||    
T  23294212 gatttttg-atgatgaattgtgtgttcttaattcatgtgcaattatgagtatg 23294263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 19725333 - 19725383
Alignment:
Q  235 ttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    ||||||||||| |||| |||||||||| |||| ||||| ||||||||||||    
T  19725333 ttttgaatgataaaatatgtgctcctatttcatgtgaaattgtgagtatga 19725383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 19970102 - 19970143
Alignment:
Q  190 aattatgggtttaagtgcttttatgtttattgtgacttttgt 231  Q
    |||| |||||||||||||||||||||| ||||||| ||||||    
T  19970102 aattttgggtttaagtgcttttatgttaattgtgatttttgt 19970143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 10784 - 10667
Alignment:
Q  168 taagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaa 267  Q
    |||| |||||||| |||||| |||||||| |||||| || ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10784 taaggtataatctcttatttacaattatgagtttaaatgtttttatgttaattgtgacttttgtgatttttgaatgatgaaattcgtgctcctaattcaa 10685  T
Q  268 gtgaatttgtgagtatga 285  Q
    |||||||| || ||||||    
T  10684 gtgaatttatgggtatga 10667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 103 - 278
Target Start/End: Original strand, 204620 - 204796
Alignment:
Q  103 taaactgaagccaaaattatgattcttgaagactaaaggtaagggagatggtttccttt-catagctaagttataatctattattttcaattatgggttt 201  Q
    |||| |||||||||| ||| ||||||||||||||| ||||||||| ||||||||| ||| ||||  |||| ||| |||| | ||||||||| ||| ||||    
T  204620 taaagtgaagccaaagttaggattcttgaagactagaggtaagggggatggtttcgttttcataattaagctatgatctctcattttcaatcatgagttt 204719  T
Q  202 aagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtg 278  Q
    ||||| |||| |||| ||| |||| |||||||||||||||| |||| |||||||||| |||||| ||||||||||||    
T  204720 aagtgtttttgtgttaattctgacatttgtgatttttgaataatgatatttgtgctcttaattcgagtgaatttgtg 204796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 108 - 283
Target Start/End: Complemental strand, 3270 - 3103
Alignment:
Q  108 tgaagccaaaattatgattcttgaagactaaaggtaagggagatggtttccttt-catagctaagttataatctattattttcaattatgggtttaagtg 206  Q
    |||||||||| |||  |||| ||||||||| |||||| || | ||||||||||| ||||  |||| |||||| | |||||||||||||||||||||||||    
T  3270 tgaagccaaagttagaattcatgaagactagaggtaacggggttggtttccttttcataattaagctataatatcttattttcaattatgggtttaagtg 3171  T
Q  207 cttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtat 283  Q
    |||||||||| ||||||||||||||         ||||||||||  ||||||||||||||||||||||| |||||||    
T  3170 cttttatgttaattgtgacttttgt---------atgatgaaatccgtgctcctaattcaagtgaatttatgagtat 3103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 128 - 275
Target Start/End: Complemental strand, 17960146 - 17959999
Alignment:
Q  128 ttgaagactaaaggtaagggagatggtttccttt-catagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgact 226  Q
    |||||||||| ||||||||| | ||||||| ||| ||||| |||| |||||||| |||||||||||||||||||||||||||||  || | |||| ||||    
T  17960146 ttgaagactagaggtaaggggggtggtttctttttcatagttaagctataatctcttattttcaattatgggtttaagtgctttggtgctaattgggact 17960047  T
Q  227 tttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaattt 275  Q
    ||||||||||||  |||||||| ||||||||| ||| ||||||||||||    
T  17960046 tttgtgattttt-catgatgaattttgtgctcttaactcaagtgaattt 17959999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 11776448 - 11776353
Alignment:
Q  174 ataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaat 273  Q
    ||||||||||||||||||||||| ||||||||||||||         ||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  11776448 ataatctattattttcaattatgagtttaagtgctttt---------gtgacttttgtgaattttgaatgatgaaattcgtgctcctaattcaagtgaat 11776358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 123 - 285
Target Start/End: Complemental strand, 15711704 - 15711541
Alignment:
Q  123 gattcttgaaga-ctaaaggtaagggagatggtttcctttca-tagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttatt 220  Q
    |||||||||||| |||||| |||||| ||||||||| ||||| ||  |||| ||||||||  ||||||||||||||  |||||||| |||| || | |||    
T  15711704 gattcttgaagaactaaagttaagggggatggtttcttttcactaattaaggtataatctcctattttcaattatgaatttaagtgtttttgtgataatt 15711605  T
Q  221 gtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    |||||||||| | |||  ||||||||||||| |||||||||||||| || |||||||| ||||||    
T  15711604 gtgacttttgaggtttc-gaatgatgaaattcgtgctcctaattcatgtaaatttgtgggtatga 15711541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 285
Target Start/End: Complemental strand, 16571465 - 16571312
Alignment:
Q  131 aagactaaaggtaagggagatggtttcctttcat-agctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgactttt 229  Q
    ||||||| ||| ||||| ||| ||||| |||||| |  ||||| ||||| |||||||| |||||||| |||||||||||||| |||| ||||||||||||    
T  16571465 aagactagaggcaagggggattgtttcttttcatcaattaagtcataatatattattt-caattatgagtttaagtgcttttgtgttaattgtgactttt 16571367  T
Q  230 gtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
     | ||||   |||||| ||||| |||||||||||||||||||||||||| ||||||    
T  16571366 ttaatttaa-aatgataaaattcgtgctcctaattcaagtgaatttgtgggtatga 16571312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 21982194 - 21982077
Alignment:
Q  168 taagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgactttt-gtgatttttgaatgatgaaatttgtgctcctaattca 266  Q
    |||| |||||||| ||| ||||| |||||||||||||||||||| || | |||||| ||||| ||| |||| ||||||| ||||||||||||||| ||||    
T  21982194 taagctataatctcttaatttcacttatgggtttaagtgcttttgtgataattgtggctttttgtggtttt-gaatgataaaatttgtgctcctatttca 21982096  T
Q  267 agtgaatttgtgagtatga 285  Q
     ||||| ||||| ||||||    
T  21982095 tgtgaaattgtgggtatga 21982077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 15692451 - 15692359
Alignment:
Q  139 aggtaagggagatggtttcctttcat-agctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttg 230  Q
    |||||||||  ||||||||||||||| |  ||||| |||||||  |||||||||||||  ||||||||| |||| |||| |||||||||||||    
T  15692451 aggtaaggggaatggtttcctttcatcaattaagtcataatcttctattttcaattataagtttaagtgattttgtgttaattgtgacttttg 15692359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 28801036 - 28800996
Alignment:
Q  235 ttttgaatgatgaaatttgtgctcctaattcaagtgaattt 275  Q
    ||||||||||||||||| |||||| ||||||| ||||||||    
T  28801036 ttttgaatgatgaaattcgtgctcttaattcatgtgaattt 28800996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 123 - 285
Target Start/End: Complemental strand, 1997 - 1833
Alignment:
Q  123 gattcttgaaga-ctaaaggtaagggagatggtttcctttca-tagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttatt 220  Q
    |||||||||||| ||| ||||||||| ||||||||| ||||| ||  ||||| ||||||||||||||||||||| | |||||||||||||| || | |||    
T  1997 gattcttgaagaactagaggtaagggggatggtttcttttcactaattaagtcataatctattattttcaattacgagtttaagtgcttttgtggtaatt 1898  T
Q  221 gtgac-ttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgagtatga 285  Q
    ||||| |||||||  |||||||||||||||||  ||||||||||||| |||||  |||| ||||||    
T  1897 gtgactttttgtg-gttttgaatgatgaaattcatgctcctaattcatgtgaacatgtgggtatga 1833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 275
Target Start/End: Original strand, 927 - 1079
Alignment:
Q  123 gattcttgaagactaaaggtaagggagatggtttcctttcat-agctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattg 221  Q
    |||||||||||| || ||||||||| ||||||| | |||||| |  ||| | |||||||  | |||||||||||| ||||||  ||||||||||| ||||    
T  927 gattcttgaagattataggtaagggggatggttccttttcatcaattaattcataatcttctcttttcaattatgagtttaaacgcttttatgttaattg 1026  T
Q  222 tgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaattt 275  Q
    |||||||||||| ||||| |||||||| || || ||| ||||||| ||||||||    
T  1027 tgacttttgtgaattttg-atgatgaatttcgtactcttaattcatgtgaattt 1079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 123 - 272
Target Start/End: Complemental strand, 2451 - 2302
Alignment:
Q  123 gattcttgaagactaaaggtaagggagatggtttcctttcatagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgt 222  Q
    |||||||||||| || |||||||||||||  |   | ||| ||  ||||| |||||||| ||||||||||||||||||||||||||||| || | |||||    
T  2451 gattcttgaagattagaggtaagggagataatgctccttcctaattaagtcataatctagtattttcaattatgggtttaagtgcttttgtgataattgt 2352  T
Q  223 ga-cttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaa 272  Q
     | ||||||||| |||||||||||| |||| ||||||| | |||| |||||    
T  2351 aaccttttgtga-ttttgaatgatggaattcgtgctcccatttcatgtgaa 2302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 21695336 - 21695239
Alignment:
Q  168 taagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattca 266  Q
    |||| ||||||||  |||||||||||||||||||||||||||| |  || |||||||| ||||||||||||| |||||||| || |||||| |||||||    
T  21695336 taagctataatctcctattttcaattatgggtttaagtgctttaacattaattgtgacatttgtgatttttg-atgatgaatttcgtgctcttaattca 21695239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 24625124 - 24625007
Alignment:
Q  158 ctttcatagctaagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgct 257  Q
    ||||||||  ||||| |||||||| |||||||| |||||||||||||||||||| |  | ||||||||||||    ||||| |||||||||||| |||||    
T  24625124 ctttcataattaagtcataatctagtattttcacttatgggtttaagtgcttttgtaataattgtgactttttatgtttttaaatgatgaaattcgtgct 24625025  T
Q  258 cctaattcaagtgaattt 275  Q
    | ||||| | ||||||||    
T  24625024 cttaatttatgtgaattt 24625007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 19068 - 18961
Alignment:
Q  168 taagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaa 267  Q
    ||||| || ||||| |||||||| ||||| |||||||||||||| || | ||||||||||||   ||||||||| |||||||||  || ||||||||||     
T  19068 taagtcattatctagtattttcacttatgagtttaagtgcttttgtgataattgtgactttttatatttttgaaagatgaaattcctgttcctaattcag 18969  T
Q  268 gtgaattt 275  Q
    ||||||||    
T  18968 gtgaattt 18961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 8102 - 8019
Alignment:
Q  168 taagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgac-ttttgtgatttttgaatgatgaaatt 251  Q
    |||| |||||||| ||| ||||| |||||||||||||||||||| || | |||||||| ||||||| ||||||||||||||||||    
T  8102 taagctataatctcttaatttcacttatgggtttaagtgcttttgtgataattgtgactttttgtg-tttttgaatgatgaaatt 8019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 1077 - 1198
Alignment:
Q  139 aggtaagggagatggtttccttt-catagct-aagttataatctattattttcaattatgggtttaagtgcttttatgtttattgtgac-ttttgtgatt 235  Q
    |||||| |||||||||||||||| ||||  | ||| |||||| | |||||||||||| |||||||||||| |||| |||| |||||||| |||||| |||    
T  1077 aggtaacggagatggtttccttttcataaatgaagctataatgtcttattttcaattgtgggtttaagtgattttgtgttaattgtgactttttgttatt 1176  T
Q  236 tttgaatgatgaaatttgtgctc 258  Q
    |||| |||||||| || ||||||    
T  1177 tttg-atgatgaatttagtgctc 1198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 2117 - 2016
Alignment:
Q  182 ttattttcaattatgggtttaagtgcttttatgtttattgtgac-ttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaatttgtgag 280  Q
    ||||||||||||||||||||||||| |||| |||| ||| |||| ||||||||||||   || ||||| |||| ||||||||||||  |||||||||| |    
T  2117 ttattttcaattatgggtttaagtg-ttttgtgttaattatgactttttgtgatttt--gattatgaattttgcgctcctaattcatatgaatttgtggg 2021  T
Q  281 tatga 285  Q
    |||||    
T  2020 tatga 2016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 371249 - 371341
Alignment:
Q  183 tattttcaattatgggtttaagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaattcaagtgaattt 275  Q
    ||||||||||||||||||||||||||||| |||| ||||||| |||| ||    ||  ||||||||||  |||||| ||||||| ||||||||    
T  371249 tattttcaattatgggtttaagtgcttttttgttaattgtgatttttttgtaactttcatgatgaaatccgtgctcttaattcatgtgaattt 371341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 3855 - 3759
Alignment:
Q  168 taagttataatctattattttcaattatgggtt-taagtgcttttatgtttattgtgacttttgtgatttttgaatgatgaaatttgtgctcctaatt 264  Q
    |||| ||||||||  | |||||||||||||||  ||||||||||| | || ||| |||||||||||||||||| |||||||| || |||||| |||||    
T  3855 taagctataatctcatcttttcaattatgggtcataagtgcttttgtattaattatgacttttgtgatttttg-atgatgaatttcgtgctcttaatt 3759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 202756 - 202845
Alignment:
Q  123 gattcttgaagactaaaggtaagggagatggtttcctttca-tagctaagttataatctattattttcaattatgggtttaagtgctttt 211  Q
    ||||||||||||||| || |||||| ||| || || ||| | ||  |||| |||||||| ||||||||| ||| ||||||||||||||||    
T  202756 gattcttgaagactagagataagggggatagtctcttttaactaattaagctataatctcttattttcacttacgggtttaagtgctttt 202845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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