View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_high_52 (Length: 266)

Name: NF0913_high_52
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_high_52
NF0913_high_52
[»] chr4 (1 HSPs)
chr4 (180-253)||(46309136-46309209)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 46309136 - 46309209
Alignment:
Q  180 tatgaaatcctatttttgtaaaaagtctttcttcaaaggtgtacaaataagcctttcttcagccttcctcattc 253  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46309136 tatgaaatcctatttttgtaaaaagcctttcttcaaaggtgtacaaataagcctttcttcagccttcctcattc 46309209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University