View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_high_53 (Length: 265)
Name: NF0913_high_53
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 54080807 - 54081061
Alignment:
| Q |
1 |
cgcaaatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaacaagagcattcagcagctataa--atacttc |
98 |
Q |
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| T |
54080807 |
cgcaaatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaactagagcattcagcggctataaatatacttc |
54080906 |
T |
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| Q |
99 |
aaaacctcttcagagtatcaacaacaaatacactgcataccctctaa-----------------ataataaatattatactatattgttcgatatcctta |
181 |
Q |
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| T |
54080907 |
aaaacctcttcagagtatcaacaacaaatacactgcataccctctaaagtttgttcaattctatataataaatattatactatattgttcgatatcctta |
54081006 |
T |
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| Q |
182 |
gtttacctttgcttgatttgctacttcaagctgctacattaatggctgcaccttg |
236 |
Q |
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| T |
54081007 |
gtttacctttgcttgatttgctacttcaagctgctacattaatggctgcaccttg |
54081061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 54084166 - 54084228
Alignment:
| Q |
5 |
aatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaa |
67 |
Q |
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|||||||| ||| | ||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
54084166 |
aatatgatctcctctactttctagcctcaaacttaaaataatcattccgcattttcacaccaa |
54084228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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