View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_high_58 (Length: 251)
Name: NF0913_high_58
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_high_58 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 51121406 - 51121185
Alignment:
| Q |
30 |
aaggctgcatatataacacccttgcaatacnnnnnnnttggagtgtttattatcgcgcacaacctaatgagcatatccttttcttaaaagtaattagaga |
129 |
Q |
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| T |
51121406 |
aaggctgcatatataacacccttgcaatacaaaaaaattggagtgtttattatcgcgcacaacctaatgagcatatccttttcttaaaagtaattagaga |
51121307 |
T |
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| Q |
130 |
cgtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaagacttccatgatgacgcaaa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
51121306 |
cgtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaagacaaccatgatgacgcgaa |
51121207 |
T |
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| Q |
230 |
aagagttccctctctctatctt |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
51121206 |
aagagttccctctctctatctt |
51121185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 45245493 - 45245415
Alignment:
| Q |
131 |
gtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaag |
210 |
Q |
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||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
45245493 |
gtaaattcgaaaacaaaaaacatcttacacttc-aaagttcaaacttaagtagagcagtttcagaatgctagcaaacaag |
45245415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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