View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_11 (Length: 526)
Name: NF0913_low_11
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 51 - 519
Target Start/End: Complemental strand, 34353611 - 34353150
Alignment:
| Q |
51 |
aattatccttcaaaggctcatgacttgctaagtaatggcagtggtttgcagaattggagttggcggttaggtgagtgcagacagggtcagacaagtggtt |
150 |
Q |
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| T |
34353611 |
aattatccttcaaaggctcatgacttgctaagtaatggcggtggtttgcagaattggagttggcggttaggtgagtgctgacagggtcagacaagtggtt |
34353512 |
T |
|
| Q |
151 |
ataaaaaatatttcaatcatggaggtattcaaatggaaaatattatatttcactgtttcagtgctaattattattttaatctatcttttactatatttca |
250 |
Q |
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| T |
34353511 |
ataaaaaatatttcaatcatggaggtattcaaat-------attatatttcactgtttcagtgctaattattattttaatctatcttttactatatttca |
34353419 |
T |
|
| Q |
251 |
atcatggtgtaatattaaaataaacaaacacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatctgag |
350 |
Q |
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| T |
34353418 |
atcatggtgtaatattaaaataaacaaacacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatctgag |
34353319 |
T |
|
| Q |
351 |
aattctcaacaagcaacaatggtttcttcctccttagtcaagtctttgtcttgtgcttttcgtgcctgccgtatcaaccactctttcagctccaccagga |
450 |
Q |
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| T |
34353318 |
aattctcaacaagcgacaatggtttcttcctccttagtgaagtctttgtcttgtgcttttcgtgcctgccgtatcagccactctttcagctccaccagga |
34353219 |
T |
|
| Q |
451 |
tcttttcgtcttccattgtctctgtcgaatcccaaactagcaatgatgatctcaatattgcctatgata |
519 |
Q |
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| T |
34353218 |
tcttttcgtcttccattgtctctgtcgaatcccaaactagcaacgatgatctcaatattgccgatgata |
34353150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 79 - 519
Target Start/End: Complemental strand, 34359207 - 34358775
Alignment:
| Q |
79 |
taagtaatggcagtggtttgcagaattggagttggcggttaggtgagtgcagacagggtcagacaagtggttataaaaaatatttcaatcatggaggtat |
178 |
Q |
| |
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|||||| |||| |||||||| |||||| ||||||| ||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| || |
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| T |
34359207 |
taagtactggcggtggtttgtagaattcaagttggca-ttaggtgagagcagacagggccagaaaagtggttataaaaaatatttcaatcatggagggat |
34359109 |
T |
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| Q |
179 |
tcaaatggaaaatattatatttcactgtttcagtgctaattattattttaatctatcttttactatatttcaatcatggtgtaatattaaaataaacaaa |
278 |
Q |
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|||||| ||||||||||||| | |||||| |||| ||||||||||||||||||||| || | ||||||||| |||||||||||||||||||| |
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| T |
34359108 |
tcaaat-------attatatttcactatctcagtgttaatagatattttaatctatcttttactgtactgcaatcatggagtaatattaaaataaacaaa |
34359016 |
T |
|
| Q |
279 |
cacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatctgagaattctcaacaagcaacaatggtttctt |
378 |
Q |
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|||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
34359015 |
cacaatcaaccatgatcttgtgcatttcgtgcgtgtaccttatcttcttttaacaatgttatgtgatctgagaattctcaacaaacaacaatggcttctt |
34358916 |
T |
|
| Q |
379 |
cctccttagtcaagtctttgtcttgtgcttttcgtgcctgccgtatcaaccactctttcagctccaccaggatcttttcgtcttccattgtctctgtcga |
478 |
Q |
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|||||||||||||||||||| |||||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| ||| | |||||| |
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| T |
34358915 |
cctccttagtcaagtctttgacttgtgctttgcgtgctggccgtatcagccactgtttcagctccaccaggatcttttcgtcttccactgtttatgtcga |
34358816 |
T |
|
| Q |
479 |
atcccaaactagcaatgatgatctcaatattgcctatgata |
519 |
Q |
| |
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||||||||||||||| |||| ||||||||||||| |||||| |
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| T |
34358815 |
atcccaaactagcaacgatgttctcaatattgccgatgata |
34358775 |
T |
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