View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_14 (Length: 522)
Name: NF0913_low_14
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_14 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 82 - 425
Target Start/End: Original strand, 45845403 - 45845746
Alignment:
| Q |
82 |
tccaacaatataaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttcca |
181 |
Q |
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| T |
45845403 |
tccaacaatgtaaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttcca |
45845502 |
T |
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| Q |
182 |
agttcacatagccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacag |
281 |
Q |
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| T |
45845503 |
agttcacatagccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacag |
45845602 |
T |
|
| Q |
282 |
caaaaaccaaagcaaacacacctaaaatgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttacc |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845603 |
caaaaaccaaagcaaacacacctaaaatgaagctacaagtgagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttacc |
45845702 |
T |
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| Q |
382 |
aactctagtggaaacactaaaacttattgatgatggaaaaatat |
425 |
Q |
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| T |
45845703 |
aactctagtggaaacactaaaacttattgatgatggaaaaatat |
45845746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 91 - 400
Target Start/End: Complemental strand, 24705 - 24396
Alignment:
| Q |
91 |
ataaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacat |
190 |
Q |
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| T |
24705 |
ataaaaacaacctaagttgatattagcaccaactttaggccttgctgttcctctaagaacaccacagcctgttgtttgaggacagttacctagttcacat |
24606 |
T |
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| Q |
191 |
agccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacagcaaaaacca |
290 |
Q |
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| T |
24605 |
aaacctataattggcaaaaccattgatgttaaagcaatgatttctttgtcttttgtgaacatactagcccacatgtttcttacacaaagagtgaaaataa |
24506 |
T |
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| Q |
291 |
aagcaaacacacctaaaatgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagt |
390 |
Q |
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| T |
24505 |
atgcaaacactccacaaatgaagctgaaagaaagtcctgaaattgctgaaagttttgcttttgatggcttttgtgcacctatcatgttaccaactcttgt |
24406 |
T |
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| Q |
391 |
ggaaacacta |
400 |
Q |
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||||||||| |
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| T |
24405 |
tgaaacacta |
24396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 2990846 - 2990734
Alignment:
| Q |
86 |
acaatataaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagtt |
185 |
Q |
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|||| |||||||||||| ||||| |||||||| |||| ||| ||||| || ||||| || || || |||||| | ||||||||||||||||||||||| | |
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| T |
2990846 |
acaagataaaaacaacctaaatttatatttgcgcctaatttcggcctcgccgttcccctcaaaacaccacaaacagttgtttgtggacaatttccaagct |
2990747 |
T |
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| Q |
186 |
cacatagccctat |
198 |
Q |
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| T |
2990746 |
cacatagtcctat |
2990734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 2990611 - 2990527
Alignment:
| Q |
321 |
agagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaact |
405 |
Q |
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|||||||||| ||||||| ||||||||||||| ||| |||| ||||||||||| || |||||||| || ||||||| |||||| |
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| T |
2990611 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaact |
2990527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 195
Target Start/End: Complemental strand, 51875434 - 51875330
Alignment:
| Q |
91 |
ataaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacat |
190 |
Q |
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||||||| | || |||||||||||||||||||| |||| || || | |||||||| || |||||||| ||||||||||| ||||| |||| ||||| |
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| T |
51875434 |
ataaaaagaccccaaattgatatttgcacctaccgtaggtctagcactacctcttaaaacaccacaacccgttgtttgtgggcaattcccaatctcacaa |
51875335 |
T |
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| Q |
191 |
agccc |
195 |
Q |
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||||| |
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| T |
51875334 |
agccc |
51875330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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