View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0913_low_17 (Length: 504)
Name: NF0913_low_17
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_17 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 47 - 411
Target Start/End: Complemental strand, 47744675 - 47744311
Alignment:
| Q |
47 |
tactgatgatttacatgaacatcactttcttcatcaaaatacttattatacagaaatgaaatatatttgcagggtatactcgccggtggacaagtgattg |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744675 |
tactgatgatttacatgaacatcactttcttcatcaaaatacttattatacagaaatgaaatatatttgcagggtatactcgccggtggacaagtgattg |
47744576 |
T |
|
| Q |
147 |
cggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagact |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744575 |
cggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagact |
47744476 |
T |
|
| Q |
247 |
acttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggtaggccataatatatg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744475 |
acttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggtaggccataatatatg |
47744376 |
T |
|
| Q |
347 |
ctttattagattgttgctctcttacatatgacaactaaaatatctaattttgtgtatgcatagat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47744375 |
ctttattagattgttgctctcttacatatgacaactaaaatatctaattttgtgtatgtatagat |
47744311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 53 - 411
Target Start/End: Complemental strand, 47716908 - 47716547
Alignment:
| Q |
53 |
tgatttacatgaacatcactttcttcatca---aaatacttattatacagaaatgaaatatatttgcagggtatactcgccggtggacaagtgattgcgg |
149 |
Q |
| |
|
||||||| ||||||||||| |||||||||| || ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47716908 |
tgatttagatgaacatcacattcttcatcattaaagtacttattatacacaaatgaaatatatttacagggtatactcgccggtggacaagtgattgcga |
47716809 |
T |
|
| Q |
150 |
tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactact |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47716808 |
tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagtttgactact |
47716709 |
T |
|
| Q |
250 |
tggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggtaggccataatatatgctt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47716708 |
tggtttttgtctagaaggaagagaaagattgcttttctatgaatttgttcctaataaaagtcttgattattttatatttggtaggccataatatatgctt |
47716609 |
T |
|
| Q |
350 |
tattagattgttgctctcttacatatgacaactaaaatatctaattttgtgtatgcatagat |
411 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
47716608 |
tattagattgttgctctcatgcatatgactactaaaatatctaattttgtgtatgtatagat |
47716547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 53 - 411
Target Start/End: Complemental strand, 47712157 - 47711796
Alignment:
| Q |
53 |
tgatttacatgaacatcactttcttcatc---aaaatacttattatacagaaatgaaatatatttgcagggtatactcgccggtggacaagtgattgcgg |
149 |
Q |
| |
|
||||||| ||||||||||| ||||||||| || || ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| | |
|
|
| T |
47712157 |
tgatttagatgaacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgcag |
47712058 |
T |
|
| Q |
150 |
tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactact |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47712057 |
tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactact |
47711958 |
T |
|
| Q |
250 |
tggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggtaggccataatatatgctt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47711957 |
tggtttttgtctagaaggaagagaaagattgcttatctatgaatttgttccgaataaaagtcttgattattttatatttggtaggccataatatatgctt |
47711858 |
T |
|
| Q |
350 |
tattagattgttgctctcttacatatgacaactaaaatatctaattttgtgtatgcatagat |
411 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
47711857 |
tattagattgttgttctcttacatatgactactaaaatagctaattttgtgtatgtatagat |
47711796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 53 - 411
Target Start/End: Complemental strand, 47759055 - 47758694
Alignment:
| Q |
53 |
tgatttacatgaacatcactttcttcatc---aaaatacttattatacagaaatgaaatatatttgcagggtatactcgccggtggacaagtgattgcgg |
149 |
Q |
| |
|
||||||| ||||||||||| ||||||||| || || ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| | |
|
|
| T |
47759055 |
tgatttagatgaacatcacattcttcatctttaacattcttgttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgcag |
47758956 |
T |
|
| Q |
150 |
tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactact |
249 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47758955 |
tcaaaaggttgtcaacaaattcaggacagggggatgttgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactact |
47758856 |
T |
|
| Q |
250 |
tggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggtaggccataatatatgctt |
349 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47758855 |
tggtttttgtctggaaggaagagaaagattgcttgtttatgaatatgttccgaataaaagtcttgattattttatatttggtaggccataatatatgctt |
47758756 |
T |
|
| Q |
350 |
tattagattgttgctctcttacatatgacaactaaaatatctaattttgtgtatgcatagat |
411 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
47758755 |
tattagatcattgctctcttacatatgactactaaaataactaattttgtgtatgtatagat |
47758694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 133 - 327
Target Start/End: Original strand, 47774492 - 47774686
Alignment:
| Q |
133 |
tggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
232 |
Q |
| |
|
||||||| |||||||||||||||| ||||| | | |||| | ||||| ||| | |||||||| |||||||| |||||||| || || |||||||||||| |
|
|
| T |
47774492 |
tggacaaatgattgcggtcaaaagattgtccaaagattctgaccaaggagatgtggaatttaaaaatgaagtacttttagtagccaaacttcaacatcga |
47774591 |
T |
|
| Q |
233 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatt |
327 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||| ||||||| | ||||| | |||||||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
47774592 |
aatttagttaggctacttggtttcagtttagaagggagagaaaaactgcttatttatgaatatgttacaaataaaagtcttgattacttcatatt |
47774686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 133 - 332
Target Start/End: Complemental strand, 6498276 - 6498077
Alignment:
| Q |
133 |
tggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
232 |
Q |
| |
|
|||||||| |||||| || ||||||||||||| | ||| |||||||| ||| || ||||||||||| || ||||| || |||||||||||||| ||| |
|
|
| T |
6498276 |
tggacaagagattgctgttaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccga |
6498177 |
T |
|
| Q |
233 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggta |
332 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||||||| | ||||| ||||||| ||||| ||| |||||||| |||||||| || ||||||| |
|
|
| T |
6498176 |
aatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtctcgattatttcatttttggta |
6498077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 133 - 334
Target Start/End: Complemental strand, 6503595 - 6503394
Alignment:
| Q |
133 |
tggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
232 |
Q |
| |
|
|||||||| | |||| ||||||||||| |||| ||||| |||||||| ||| || ||||||||||||||| ||||||| ||||| |||||||| || |
|
|
| T |
6503595 |
tggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttttagttgctaaacttcaacacaga |
6503496 |
T |
|
| Q |
233 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggta |
332 |
Q |
| |
|
||| |||||||| |||| |||||||| |||||||||||||||||| | ||||| ||||| | |||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
6503495 |
aatctagttagattactcggtttttgcctagaaggaagagaaagacttcttgtatatgagtttgtttgtaataaaagtcttgattactttatttttggta |
6503396 |
T |
|
| Q |
333 |
gg |
334 |
Q |
| |
|
|| |
|
|
| T |
6503395 |
gg |
6503394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 106 - 299
Target Start/End: Original strand, 6524857 - 6525050
Alignment:
| Q |
106 |
aatatatttgcagggtatactcgccggtggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtg |
205 |
Q |
| |
|
||||||||| ||||||| |||| || |||||||| ||||| |||||||||||||| | |||| || ||||| ||| | ||||||||||||||||| |
|
|
| T |
6524857 |
aatatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagta |
6524956 |
T |
|
| Q |
206 |
cttttagtcgctaagcttcaacatcgaaatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttc |
299 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||| | ||||| ||||||| ||||| |
|
|
| T |
6524957 |
gttttagtggctaaacttcaacatcgaaacttagttaggctacttggtttctgtatagaaggaagagaaagactacttgtatatgaatttgttc |
6525050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 144 - 334
Target Start/End: Complemental strand, 6511204 - 6511014
Alignment:
| Q |
144 |
ttgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttag |
243 |
Q |
| |
|
|||| ||||||||||| |||| ||||| |||||||| ||| | || |||||||||||||| ||||||| ||||| |||||||| ||||||||||| || |
|
|
| T |
6511204 |
ttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagtatttttagtggctaaacttcaacaccgaaatttagtaag |
6511105 |
T |
|
| Q |
244 |
actacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggtagg |
334 |
Q |
| |
|
| |||| ||||| || |||||||||||||||||| | ||| | ||||| | ||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
6511104 |
attactcggtttctgcctagaaggaagagaaagactacttatatatgagtttgttcataataaaagtcttgattactttatttttggtagg |
6511014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 133 - 332
Target Start/End: Original strand, 47770584 - 47770783
Alignment:
| Q |
133 |
tggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
232 |
Q |
| |
|
||||||| ||||||| || ||||| |||| || | |||| | ||||| ||| | |||||||| |||||||| | ||||| || ||||||||||||||| |
|
|
| T |
47770584 |
tggacaaatgattgctgtaaaaagattgttaaaagattccagccaaggagatgtggaatttaaaaatgaagtattattagtagccaagcttcaacatcga |
47770683 |
T |
|
| Q |
233 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggta |
332 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||| || |||||| | ||| | ||||||| |||| ||||||||||||||||||| || |||||||||| |
|
|
| T |
47770684 |
aatttagttagacttcttggtttcagtttagaagggagtgaaagacttcttatttatgaatttgttacaaataaaagtcttgattacttcatatttggta |
47770783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 334
Target Start/End: Complemental strand, 6515621 - 6515437
Alignment:
| Q |
150 |
tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactact |
249 |
Q |
| |
|
|||||||||| |||| ||||| |||||||| ||| | || ||||||||||| ||| |||| | ||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
6515621 |
tcaaaaggttatcaatgaattctggacaaggagatctagagtttaagaatgaggtgtttttcctggctaaacttcaacaccgaaatttagttagattact |
6515522 |
T |
|
| Q |
250 |
tggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggtagg |
334 |
Q |
| |
|
||||| || |||||||| || |||||| | ||| | || || | ||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
6515521 |
cggtttctgcctagaagggagtgaaagactacttatatacgagtttgttcataataaaagtcttgattactttatttttggtagg |
6515437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 47689803 - 47689917
Alignment:
| Q |
218 |
aagcttcaacatcgaaatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgatt |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| ||| || || |||||||||| | || | ||||| | ||| | |||||||||||||||| |
|
|
| T |
47689803 |
aagcttcaacatcgaaatttagttaaactactaggtttctgtttacaaaaaagagaaagactactaatttatgagtttgtctccaataaaagtcttgatt |
47689902 |
T |
|
| Q |
318 |
attttatatttggta |
332 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
47689903 |
atatcatatttggta |
47689917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 141 - 332
Target Start/End: Complemental strand, 27369328 - 27369137
Alignment:
| Q |
141 |
tgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagt |
240 |
Q |
| |
|
||||||| || |||||||||||||||||||| | ||||| ||| |||| ||||| |||||||| |||||||| || || ||||||||||||||| |||| |
|
|
| T |
27369328 |
tgattgctgtgaaaaggttgtcaacaaattctgaccaaggagatgttgagtttaaaaatgaagtacttttagtagccaaacttcaacatcgaaatctagt |
27369229 |
T |
|
| Q |
241 |
tagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggta |
332 |
Q |
| |
|
||| ||||||||||| ||||||||||| ||||||||| | ||| | ||||||| |||| ||||||||||||||||||| || |||||||||| |
|
|
| T |
27369228 |
taggctacttggtttctgtctagaagggagagaaagactacttatttatgaatttgtttcaaataaaagtcttgattacttcatatttggta |
27369137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 133 - 332
Target Start/End: Complemental strand, 28829484 - 28829285
Alignment:
| Q |
133 |
tggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
232 |
Q |
| |
|
|||||||||||||||||| |||||||| || | |||||| || ||||| ||| | ||||||||||| ||||| | ||| || || || |||||||| ||| |
|
|
| T |
28829484 |
tggacaagtgattgcggtgaaaaggttatccataaattctggtcaaggagatctagaatttaagaacgaagtacgtttggtggccaaacttcaacaccga |
28829385 |
T |
|
| Q |
233 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggta |
332 |
Q |
| |
|
|||||||||||||| ||||||||| | | ||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| || || |||||||||| |
|
|
| T |
28829384 |
aatttagttagactccttggttttactgttgaagggagagaaagattacttgtctatgaatttgttcctaataaaagtcttgactacttcatatttggta |
28829285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 133 - 332
Target Start/End: Complemental strand, 28860520 - 28860321
Alignment:
| Q |
133 |
tggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
232 |
Q |
| |
|
|||||||| ||| || || ||||||||||| | ||||| || ||||| |||| || ||||||||||||||||||||| | || || |||||||| || |
|
|
| T |
28860520 |
tggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttaatggccaaacttcaacaccgg |
28860421 |
T |
|
| Q |
233 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggta |
332 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||| ||||||||| | ||||||||||||| | |||| |||||||||||||| || || |||||||||| |
|
|
| T |
28860420 |
aatttagttagactacttggttttactattgaagggagagaaagactacttgtctatgaatttattcccaataaaagtcttgactacttcatatttggta |
28860321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 133 - 332
Target Start/End: Complemental strand, 28855161 - 28854962
Alignment:
| Q |
133 |
tggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
232 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||||| || ||||| ||| | ||||||||||||||| | | || | ||||| |||||||||| | |
|
|
| T |
28855161 |
tggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctaaacttcaacatcaa |
28855062 |
T |
|
| Q |
233 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggta |
332 |
Q |
| |
|
||||||||||| ||||||||||| | | ||||| ||||||||| | || |||||||||| |||||| |||||||||||||| || || |||||||||| |
|
|
| T |
28855061 |
aatttagttaggttacttggttttactatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggta |
28854962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 312
Target Start/End: Complemental strand, 28875071 - 28874911
Alignment:
| Q |
152 |
aaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactacttg |
251 |
Q |
| |
|
||||||||||| | ||||| || ||||| ||||| |||||||||||||||||||||||| | || || |||||||| || ||||| ||||||||||||| |
|
|
| T |
28875071 |
aaaaggttgtccatgaattctggccaaggagatatagaatttaagaatgaagtgcttttaatggccaaacttcaacaccggaatttggttagactacttg |
28874972 |
T |
|
| Q |
252 |
gtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtct |
312 |
Q |
| |
|
||||| | | ||||| ||||||||| | ||||||||||||| | |||| ||||||||||| |
|
|
| T |
28874971 |
gttttactattgaagggagagaaagactacttgtctatgaatttattcccaataaaagtct |
28874911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 454895 - 454842
Alignment:
| Q |
279 |
tgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggta |
332 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||||||| || ||||||||| |
|
|
| T |
454895 |
tgcttgtttatgaatatgtactaaataaaagtcttgattacttcttatttggta |
454842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 144 - 334
Target Start/End: Complemental strand, 12884 - 12695
Alignment:
| Q |
144 |
ttgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttag |
243 |
Q |
| |
|
|||| ||||||||||| |||| ||||| |||||||| ||| | || |||||||||||||| ||||||| ||||| |||||||| ||||||||||| || |
|
|
| T |
12884 |
ttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagta-ttttagtggctaaacttcaacaccgaaatttagtaag |
12786 |
T |
|
| Q |
244 |
actacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggtagg |
334 |
Q |
| |
|
| |||| ||||| || |||||||||||||||||| | ||| | ||||| | ||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
12785 |
attactcggtttctgcctagaaggaagagaaagactacttatatatgagtttgttcataataaaagtcttgattactttatttttggtagg |
12695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 318
Target Start/End: Complemental strand, 5277 - 5092
Alignment:
| Q |
133 |
tggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
232 |
Q |
| |
|
|||||||| | |||| ||||||||||| |||| ||||| |||||||| ||| || ||||||||||||||| ||||||| ||||| |||||||| || |
|
|
| T |
5277 |
tggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttttagttgctaaacttcaacacaga |
5178 |
T |
|
| Q |
233 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgatta |
318 |
Q |
| |
|
||| |||||||| |||| |||||||| |||||||||||||||||| | ||||| ||||| | |||| ||||||||||||||||| |
|
|
| T |
5177 |
aatctagttagattactcggtttttgcctagaaggaagagaaagacttcttgtatatgagtttgtttgtaataaaagtcttgatta |
5092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 411
Target Start/End: Original strand, 11224684 - 11224717
Alignment:
| Q |
378 |
caactaaaatatctaattttgtgtatgcatagat |
411 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
11224684 |
caactaaaatatctaattttgtgtatgtatagat |
11224717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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