View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_19 (Length: 469)
Name: NF0913_low_19
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 33 - 219
Target Start/End: Complemental strand, 6942803 - 6942613
Alignment:
| Q |
33 |
aatgcatgcatcaaacttggtgataactaaaacaacattttgttcaaacacaatttgtgatgt----gtccaacaccaataacgatcctcaatgcaaata |
128 |
Q |
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| T |
6942803 |
aatgcatgcatcaaacttggtgataactaaaacaacattttgttcaaacacaatttgtgatgtccaagtccaacaccaataacgatcctcaatgcaaata |
6942704 |
T |
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| Q |
129 |
tctcacgtataaaacttattattaaaatagattttattctcattaaagcacatgcactcaataatcatggttgggtaaattacctgcatat |
219 |
Q |
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| T |
6942703 |
tctcacgtataaaacttattattaaaatagattttattctcattaaagcacatgcactcaataatcatggctgggtaaattacctgcatat |
6942613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 341 - 457
Target Start/End: Complemental strand, 6942492 - 6942378
Alignment:
| Q |
341 |
aaaacgccaagagagagttctaaattgaaattcataggagagttgatcgtattagtaaagtaccatggtgcgaagtcatccagcattgagcgaaactcca |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
6942492 |
aaaacgccaagagagagttctaaattgaaattcataggagagttgatcgtattagcaaagtaccatggtgcgaagtcgt--agcattgagcgaaactcca |
6942395 |
T |
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| Q |
441 |
gcaacatctcccgttca |
457 |
Q |
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| T |
6942394 |
gcaacatctcccgttca |
6942378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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