View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_low_2 (Length: 846)

Name: NF0913_low_2
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_low_2
NF0913_low_2
[»] chr4 (26 HSPs)
chr4 (71-806)||(16844150-16844893)
chr4 (71-431)||(24218885-24219242)
chr4 (71-221)||(16846817-16846966)
chr4 (740-806)||(37777459-37777525)
chr4 (752-806)||(24969254-24969308)
chr4 (743-806)||(40089328-40089390)
chr4 (738-799)||(2790981-2791042)
chr4 (737-788)||(35780574-35780625)
chr4 (740-806)||(19498313-19498379)
chr4 (752-806)||(32128404-32128458)
chr4 (740-806)||(34027388-34027454)
chr4 (756-806)||(38352489-38352539)
chr4 (752-806)||(54083478-54083532)
chr4 (752-806)||(10431442-10431496)
chr4 (740-806)||(16882627-16882693)
chr4 (752-806)||(37514570-37514624)
chr4 (752-806)||(45560704-45560758)
chr4 (752-805)||(55255092-55255145)
chr4 (754-806)||(1105445-1105497)
chr4 (740-788)||(54779441-54779489)
chr4 (757-788)||(35463958-35463989)
chr4 (752-806)||(5128983-5129037)
chr4 (752-806)||(17679229-17679283)
chr4 (752-806)||(47127993-47128047)
chr4 (752-806)||(48208462-48208516)
chr4 (756-805)||(38209842-38209891)
[»] chr5 (36 HSPs)
chr5 (71-484)||(37638340-37638752)
chr5 (71-484)||(37710101-37710513)
chr5 (71-484)||(37822498-37822910)
chr5 (71-434)||(37394040-37394403)
chr5 (71-434)||(37531743-37532106)
chr5 (71-434)||(37592847-37593210)
chr5 (71-434)||(37402152-37402515)
chr5 (73-434)||(37695238-37695599)
chr5 (73-344)||(37701422-37701690)
chr5 (71-394)||(37434393-37434716)
chr5 (71-338)||(37439809-37440076)
chr5 (76-324)||(37427803-37428051)
chr5 (73-284)||(37383482-37383693)
chr5 (531-672)||(37709922-37710056)
chr5 (531-626)||(37394481-37394576)
chr5 (564-672)||(37531424-37531529)
chr5 (564-672)||(37592631-37592736)
chr5 (564-672)||(37694990-37695095)
chr5 (739-806)||(38869593-38869660)
chr5 (752-806)||(16199026-16199080)
chr5 (738-806)||(16799556-16799624)
chr5 (752-806)||(27923897-27923951)
chr5 (759-806)||(9364113-9364160)
chr5 (537-607)||(37402566-37402636)
chr5 (740-806)||(40389765-40389831)
chr5 (575-672)||(37822032-37822126)
chr5 (752-806)||(15480229-15480283)
chr5 (752-806)||(19523105-19523159)
chr5 (752-805)||(34756615-34756668)
chr5 (756-800)||(7670743-7670787)
chr5 (743-787)||(28822576-28822620)
chr5 (754-806)||(30853280-30853332)
chr5 (752-806)||(16592845-16592899)
chr5 (752-806)||(31881590-31881644)
chr5 (752-806)||(36188019-36188073)
chr5 (564-593)||(37531565-37531594)
[»] chr3 (21 HSPs)
chr3 (739-806)||(44708281-44708348)
chr3 (555-628)||(14552533-14552606)
chr3 (740-803)||(48156942-48157005)
chr3 (735-806)||(53507117-53507188)
chr3 (737-806)||(43207474-43207543)
chr3 (739-806)||(9878919-9878986)
chr3 (752-806)||(50939468-50939522)
chr3 (752-806)||(34290874-34290928)
chr3 (752-806)||(54407391-54407445)
chr3 (752-806)||(50258734-50258788)
chr3 (752-805)||(27078819-27078872)
chr3 (752-805)||(27084616-27084669)
chr3 (752-805)||(36716276-36716329)
chr3 (752-805)||(38681348-38681401)
chr3 (757-806)||(48720530-48720579)
chr3 (752-805)||(54619454-54619507)
chr3 (752-806)||(3954852-3954906)
chr3 (752-806)||(13795199-13795253)
chr3 (737-786)||(11467754-11467803)
chr3 (751-788)||(25373642-25373679)
chr3 (756-805)||(36605862-36605911)
[»] chr6 (14 HSPs)
chr6 (737-806)||(17353756-17353825)
chr6 (738-806)||(20711952-20712020)
chr6 (739-806)||(28075587-28075654)
chr6 (740-806)||(19986966-19987032)
chr6 (752-806)||(27788922-27788976)
chr6 (737-799)||(235466-235528)
chr6 (752-806)||(23070889-23070943)
chr6 (752-805)||(13727650-13727703)
chr6 (752-806)||(12083640-12083694)
chr6 (752-806)||(19741223-19741277)
chr6 (756-806)||(30832667-30832717)
chr6 (752-793)||(21280345-21280386)
chr6 (752-805)||(21479296-21479349)
chr6 (752-793)||(27314777-27314818)
[»] chr7 (13 HSPs)
chr7 (740-806)||(47985202-47985268)
chr7 (739-806)||(38415108-38415175)
chr7 (752-806)||(48984077-48984131)
chr7 (752-806)||(24525918-24525972)
chr7 (741-806)||(25010254-25010319)
chr7 (739-806)||(19691896-19691964)
chr7 (755-806)||(20091514-20091565)
chr7 (752-806)||(23551305-23551359)
chr7 (752-806)||(28749593-28749647)
chr7 (739-806)||(10329643-10329710)
chr7 (752-806)||(12596429-12596483)
chr7 (738-788)||(26253067-26253117)
chr7 (752-805)||(18777019-18777072)
[»] chr2 (14 HSPs)
chr2 (740-806)||(26715931-26715997)
chr2 (752-806)||(9045844-9045898)
chr2 (752-806)||(27506975-27507029)
chr2 (754-806)||(24410250-24410302)
chr2 (752-806)||(10762799-10762853)
chr2 (752-805)||(4505691-4505744)
chr2 (761-806)||(8327488-8327533)
chr2 (752-806)||(3952911-3952965)
chr2 (752-805)||(3155015-3155068)
chr2 (752-805)||(6964804-6964857)
chr2 (752-806)||(7162689-7162743)
chr2 (752-806)||(12337689-12337743)
chr2 (752-805)||(34693159-34693212)
chr2 (752-805)||(34715571-34715624)
[»] chr8 (11 HSPs)
chr8 (738-806)||(42600582-42600650)
chr8 (752-802)||(10917206-10917256)
chr8 (752-806)||(23606855-23606909)
chr8 (737-806)||(23798495-23798564)
chr8 (752-806)||(20003876-20003930)
chr8 (752-805)||(2952473-2952526)
chr8 (752-805)||(3048774-3048827)
chr8 (752-805)||(5860996-5861049)
chr8 (738-788)||(45193876-45193926)
chr8 (752-806)||(45472203-45472257)
chr8 (752-805)||(30883122-30883175)
[»] chr1 (21 HSPs)
chr1 (739-806)||(9173255-9173322)
chr1 (739-806)||(27559446-27559513)
chr1 (752-806)||(1367111-1367165)
chr1 (752-806)||(13913716-13913770)
chr1 (752-806)||(40502024-40502078)
chr1 (739-802)||(44895466-44895529)
chr1 (738-805)||(51607674-51607741)
chr1 (756-806)||(19955547-19955597)
chr1 (752-806)||(14146217-14146271)
chr1 (752-806)||(17168781-17168835)
chr1 (752-806)||(23181723-23181777)
chr1 (752-805)||(27906949-27907002)
chr1 (752-805)||(44655551-44655604)
chr1 (752-788)||(5027992-5028028)
chr1 (752-806)||(3406335-3406389)
chr1 (752-806)||(3440431-3440485)
chr1 (752-806)||(6771708-6771762)
chr1 (752-806)||(6888481-6888535)
chr1 (752-806)||(10912094-10912148)
chr1 (738-788)||(12037587-12037637)
chr1 (752-806)||(41697279-41697333)
[»] scaffold0039 (1 HSPs)
scaffold0039 (740-806)||(106379-106445)
[»] scaffold0027 (1 HSPs)
scaffold0027 (738-806)||(4147-4215)
[»] scaffold0070 (1 HSPs)
scaffold0070 (752-806)||(1023-1077)


Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 71 - 806
Target Start/End: Original strand, 16844150 - 16844893
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16844150 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 16844249  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16844250 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtaacaatc 16844349  T
Q  271 ggatatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgcctcgcaagacatgttgaacgtatgt 370  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16844350 ggatatgcatgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgccttgcaagacatgttgaacgtatgt 16844449  T
Q  371 ttaacataagattgaaaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaattaattgggcgagggnnnnnnncaaatatgtagatacaactg 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||       ||||||||||||||||||||    
T  16844450 ttaacataagattgaaaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaattaattggatgagggtttttttcaaatatgtagatacaactg 16844549  T
Q  471 tttgtaattaatcttgtc-nnnnnnnctgtttgtaattaatct-aatttctc------agggatgtagtatatatatatcttttaataccaatgtgctat 562  Q
    ||||||||||||||||||        ||||||||||||||||| ||||||||      ||||||||||||||||||||||||||||||||||||||||||    
T  16844550 tttgtaattaatcttgtcaaaaaaaactgtttgtaattaatctgaatttctcagtttaagggatgtagtatatatatatcttttaataccaatgtgctat 16844649  T
Q  563 atattgtaagttgttgaacaaataagaaatttatagtgatcaattgctttttggttactttcaagannnnnnnngttgaataaatgatcaagacttaatt 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  16844650 atattgtaagttgttgaacaaataagaaatttatagtgatcaattgctttttggttactttcaagattttttttgttgaataaatgatcaagacttaatt 16844749  T
Q  663 gcttcaacttttgaacnnnnnnnnnatctcaatgtctcctggttggtaggtagcccacatttaggtaaatcgagaatcaggcccggctatgagggggtgc 762  Q
    ||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16844750 gcttcaacttttgaactttttttttatctcaatgtctcctggttggtaggtagcccacatttaggtaaatcgaggatcaggcccggctatgagggggtgc 16844849  T
Q  763 aaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  16844850 aaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16844893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 71 - 431
Target Start/End: Original strand, 24218885 - 24219242
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    ||||||||||||||||  | || |||||||||||||| || ||||||||||| ||||||||||||||||||||| |||| ||| ||||||| ||||||||    
T  24218885 acctttcacaaaaccatctcaagggaatcatacctaccggccaacaatttaacacatttggaaatgattcctatgaaggaaatgcaatgttatgtggatt 24218984  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 270  Q
     ||||| || || |||||||||||||| ||||||| ||||| | ||||||| ||| | ||||| || ||||| ||||||||||||||||| ||||||||     
T  24218985 tccattgtcaaaatcatgcaaaaatgatgaagatcggccaccatattcaacgtctaatgatgacgaggaatcgggatttggctggaaagcagtagcaata 24219084  T
Q  271 ggatatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgcctcgcaagacatgttgaacgtatgt 370  Q
    |||||||  ||||| ||| || | ||  | ||||||||||||| ||   | ||||||||||| ||||| ||||| || ||||||||||||||| | || |    
T  24219085 ggatatggatgtggggcagtacttggaatcctcttgggatatagtg---tgttcttcactgggaaacctcaatggcttgcaagacatgttgaaagcatat 24219181  T
Q  371 ttaacataagattgaaaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaatta 431  Q
    ||| ||||||||||||||| |||| ||| | ||     ||||||||| |||||||||||||    
T  24219182 ttagcataagattgaaaaggacaaacaagaaagttggtgcaaatcgcagaagaatgaatta 24219242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 71 - 221
Target Start/End: Original strand, 16846817 - 16846966
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    |||||||| |||||||| || | ||| |||||||||||||||||||||||  |||||||||||||||||||||| |||| ||||||||||||||||||||    
T  16846817 acctttcaaaaaaccaccttgagggagtcatacctacaggtcaacaattttctacatttggaaatgattcctatgaaggaaatacaatgttgtgtggatt 16846916  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaac 221  Q
     ||||  ||||| ||||  |||||||||||||||||||||| |||||||||    
T  16846917 cccatcgtctaaatcat-aaaaaatgaggaagatctgccaccacattcaac 16846966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 740 - 806
Target Start/End: Complemental strand, 37777525 - 37777459
Alignment:
Q  740 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  37777525 caggcccggccttgagggggtgcaaacagctcaacagagctggacctccctcaatcatgggcctcaa 37777459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 24969254 - 24969308
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  24969254 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24969308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 743 - 806
Target Start/End: Original strand, 40089328 - 40089390
Alignment:
Q  743 gcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  40089328 gcccggccatgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40089390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 738 - 799
Target Start/End: Complemental strand, 2791042 - 2790981
Alignment:
Q  738 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgg 799  Q
    |||||||||| || |||||||||||||||||||||||||||||||| |||| ||| ||||||    
T  2791042 atcaggcccgactctgagggggtgcaaacagctcaacagagctgggtctccctcagtcatgg 2790981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 737 - 788
Target Start/End: Complemental strand, 35780625 - 35780574
Alignment:
Q  737 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctcc 788  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||||||||    
T  35780625 aatcaggcccggctccgagggggtgcaaacagctcaaccgagctgggcctcc 35780574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 740 - 806
Target Start/End: Original strand, 19498313 - 19498379
Alignment:
Q  740 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||  ||| |||||||||| |||||||||| |||||||||||  ||||||||||||||||    
T  19498313 caggcccggccctgacggggtgcaaatagctcaacagtgctgggcctcccccaatcatgggcctcaa 19498379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 32128404 - 32128458
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||    
T  32128404 tgagggggtgcaaacagctcaacagagctgggcctccctcagttatggacctcaa 32128458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 740 - 806
Target Start/End: Original strand, 34027388 - 34027454
Alignment:
Q  740 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||| |||| |||||| |||||||| |||||||||||||||| |||| ||| |||||||||||||    
T  34027388 caggcctggctctgagggagtgcaaactgctcaacagagctgggtctccctcagtcatgggcctcaa 34027454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 756 - 806
Target Start/End: Complemental strand, 38352539 - 38352489
Alignment:
Q  756 ggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||| | | |||||||||||||    
T  38352539 ggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38352489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 54083532 - 54083478
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||    
T  54083532 tgagggggtgcaaacagctcaatagagctgggcatccctcagtcatgggcctcaa 54083478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 10431496 - 10431442
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  10431496 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 10431442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 740 - 806
Target Start/End: Complemental strand, 16882693 - 16882627
Alignment:
Q  740 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||| | ||||| ||||||||||||||||||||||||||| ||| | | ||||| |||||||    
T  16882693 caggcccggttctgaggaggtgcaaacagctcaacagagctgggcttcccttagtcatgagcctcaa 16882627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 37514570 - 37514624
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  |||||||||||||| |||  |||||||||||    
T  37514570 tgagggggtgcaaacagctcaaacgagctgggcctcctccaaggatgggcctcaa 37514624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 45560758 - 45560704
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  45560758 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctcaa 45560704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Original strand, 55255092 - 55255145
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  55255092 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 55255145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 754 - 806
Target Start/End: Original strand, 1105445 - 1105497
Alignment:
Q  754 agggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  1105445 agggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 1105497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 788
Target Start/End: Original strand, 54779441 - 54779489
Alignment:
Q  740 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctcc 788  Q
    ||||||||||  |||||| |||||||||||||||| |||||||||||||    
T  54779441 caggcccggccctgagggagtgcaaacagctcaaccgagctgggcctcc 54779489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 788
Target Start/End: Original strand, 35463958 - 35463989
Alignment:
Q  757 gggtgcaaacagctcaacagagctgggcctcc 788  Q
    ||||||||||||||||||||||||||||||||    
T  35463958 gggtgcaaacagctcaacagagctgggcctcc 35463989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 5129037 - 5128983
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  || ||||||||    
T  5129037 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggataggcctcaa 5128983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 17679229 - 17679283
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  |||||| |||||| ||||  |||||||||||    
T  17679229 tgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaa 17679283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 47127993 - 47128047
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||||||||||| |||  ||||||||||||| ||||  |||||||||||    
T  47127993 tgagggggtgcaaacagcccaaacgagctgggcctccctcaaggatgggcctcaa 47128047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 48208462 - 48208516
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||  |||||||||||    
T  48208462 tgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaa 48208516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 805
Target Start/End: Complemental strand, 38209891 - 38209842
Alignment:
Q  756 ggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  38209891 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38209842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 252; Significance: 1e-139; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 71 - 484
Target Start/End: Complemental strand, 37638752 - 37638340
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    ||||||||||||||||  || | ||||||||||||| ||||||||| ||||||||||||||||||||||| | | |||| ||||||||||||||||||||    
T  37638752 acctttcacaaaaccatcttgagggaatcatacctaaaggtcaacagtttaatacatttggaaatgattcttttgaaggaaatacaatgttgtgtggatt 37638653  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 270  Q
     | ||| ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37638652 ccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatccggatttggctggaaagcggtagcaatc 37638553  T
Q  271 ggatatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgcctcgcaagacatgttgaacgtatgt 370  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| || |||||||||||||||| |||||    
T  37638552 ggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaacccgaatggcttgcaagacatgttgaacatatgt 37638453  T
Q  371 ttaacataagattgaaaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaattaattgggcgagggnnnnnnncaaatatgtagatacaactg 470  Q
    || ||||||||||||||||||| | ||||||||| | |||||||||| ||||||||||||||||||  |||||       ||||||||||| ||||||||    
T  37638452 ttgacataagattgaaaagaacgaacaacagagccatcgcaaatcgcagaagaatgaattaattggatgaggg-tcttttcaaatatgtagttacaactg 37638354  T
Q  471 tttgtaattaatct 484  Q
    ||||||||||||||    
T  37638353 tttgtaattaatct 37638340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 71 - 484
Target Start/End: Complemental strand, 37710513 - 37710101
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    ||||||||||||||||  || | ||||||||||||| ||||||||| ||||||||||||||||||||||| | | |||| ||||||||||||||||||||    
T  37710513 acctttcacaaaaccatcttgagggaatcatacctaaaggtcaacagtttaatacatttggaaatgattcttttgaaggaaatacaatgttgtgtggatt 37710414  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 270  Q
     ||||| ||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37710413 tccattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 37710314  T
Q  271 ggatatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgcctcgcaagacatgttgaacgtatgt 370  Q
    |||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||| || |||||| |||| || | |||||||||||||| |||||    
T  37710313 ggatatgcatgtggggcaatattcgggttgctattcggatataatgtattcttcttcaccggtaaacccgaatggcttgtaagacatgttgaacatatgt 37710214  T
Q  371 ttaacataagattgaaaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaattaattgggcgagggnnnnnnncaaatatgtagatacaactg 470  Q
    || ||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||  || ||       |||||||||||||| |||||    
T  37710213 ttgacataagattgaaaagaacaaacaacagagccatcgcaaatcgcagaagaatgaattaattggatgatgg-tgttttcaaatatgtagatataactg 37710115  T
Q  471 tttgtaattaatct 484  Q
    ||||||||||||||    
T  37710114 tttgtaattaatct 37710101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 71 - 484
Target Start/End: Complemental strand, 37822910 - 37822498
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    ||||||||||||||||  || | ||||||||||||| ||||||||| ||||||||||||||||||||||| | | |||| ||||||||||| ||||||||    
T  37822910 acctttcacaaaaccatcttgagggaatcatacctaaaggtcaacagtttaatacatttggaaatgattcttttgaaggaaatacaatgttatgtggatt 37822811  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 270  Q
     ||||| ||||| |||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37822810 tccattgtctaaatcatgcaaaaatgaggaagatcggccacctcattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 37822711  T
Q  271 ggatatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgcctcgcaagacatgttgaacgtatgt 370  Q
    |||||||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| |||||| |||| || |||||||||||||||| |||||    
T  37822710 ggatatgcatgtggggcaatcttcgggttgctattcggatataatgtattcttcttcactggtaaacccgaatggcttgcaagacatgttgaacatatgt 37822611  T
Q  371 ttaacataagattgaaaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaattaattgggcgagggnnnnnnncaaatatgtagatacaactg 470  Q
    || ||||||||||||||||||| | ||||||||| | ||||||||||  |||||||||||||||||  |||||       ||||||||||| ||||||||    
T  37822610 ttgacataagattgaaaagaacgaacaacagagccatcgcaaatcgcataagaatgaattaattggatgaggg-tcttttcaaatatgtagttacaactg 37822512  T
Q  471 tttgtaattaatct 484  Q
    ||||||||||||||    
T  37822511 tttgtaattaatct 37822498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 71 - 434
Target Start/End: Original strand, 37394040 - 37394403
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    ||||||||||||||||| || | ||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  37394040 acctttcacaaaaccaccttgagggagtcatacctacaggtcaacaatttgatacatttggaaatgattcttatgaagggaatacaatgttgtgtggatt 37394139  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 270  Q
     | ||| ||||| ||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37394140 ccaattgtctaaatcatgcaaaaatgaggaagatcttccaccgcattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 37394239  T
Q  271 ggatatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgcctcgcaagacatgttgaacgtatgt 370  Q
    |||||||  ||||| |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||  |||||    
T  37394240 ggatatggatgtggggcaatatatgggttgctgttgggatataatgtattcttcttcactggaaaaccccaatggcttgcaagacatgttgaaaatatgt 37394339  T
Q  371 ttaacataagattgaaaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaattaatt 434  Q
    |||||||||||||||||||| ||| ||| ||||| | |  ||||||  |||| |||||||||||    
T  37394340 ttaacataagattgaaaagatcaaacaatagagccaacttaaatcgtagaaggatgaattaatt 37394403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 71 - 434
Target Start/End: Complemental strand, 37532106 - 37531743
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    ||||||||||||||||| || | ||||||||||||| ||||||||| ||||||||||||||||||||||| | | |||| ||||||||||||||||||||    
T  37532106 acctttcacaaaaccaccttgagggaatcatacctaaaggtcaacagtttaatacatttggaaatgattcttttgaaggaaatacaatgttgtgtggatt 37532007  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 270  Q
     | ||| ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || |||||     
T  37532006 ccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatcaggatttggctggaaagctgtggcaatt 37531907  T
Q  271 ggatatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgcctcgcaagacatgttgaacgtatgt 370  Q
    |||||||  ||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||| || |  |||  |||||||   ||||    
T  37531906 ggatatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgt 37531807  T
Q  371 ttaacataagattgaaaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaattaatt 434  Q
    ||||||||||| |||||||||||| |||||||      ||||||||| ||||||||||||||||    
T  37531806 ttaacataagactgaaaagaacaaacaacagatactgtgcaaatcgcagaagaatgaattaatt 37531743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 71 - 434
Target Start/End: Complemental strand, 37593210 - 37592847
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    ||||||||||||||||| || | ||||||||||||| ||||||||| ||||||||||||||||||||||| | | |||| ||||||||||||||||||||    
T  37593210 acctttcacaaaaccaccttgagggaatcatacctaaaggtcaacagtttaatacatttggaaatgattcttttgaaggaaatacaatgttgtgtggatt 37593111  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 270  Q
     | ||| ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||     
T  37593110 ccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatccggatttggctggaaagctgtggcaatt 37593011  T
Q  271 ggatatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgcctcgcaagacatgttgaacgtatgt 370  Q
    |||||||  ||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||| || |  |||  |||||||   ||||    
T  37593010 ggatatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgt 37592911  T
Q  371 ttaacataagattgaaaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaattaatt 434  Q
    ||||||||||| |||||||||||| |||||||      ||||||||| ||||||||||||||||    
T  37592910 ttaacataagactgaaaagaacaaacaacagatactgtgcaaatcgcagaagaatgaattaatt 37592847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 71 - 434
Target Start/End: Original strand, 37402152 - 37402515
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    ||||||||||||||||  || | ||||||||||||| ||||||||| ||||||||||||| ||||||||| | | |||| ||||||||||||||||||||    
T  37402152 acctttcacaaaaccatcttgagggaatcatacctaaaggtcaacagtttaatacatttgaaaatgattcttttgaaggaaatacaatgttgtgtggatt 37402251  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 270  Q
     | ||| ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||     
T  37402252 ccaattgtctaaatcatgcaaaaatgaggaagatctgccacctcattcaacatctgaagatgaagaagaatccggatttggctggaaagctgtggcaatt 37402351  T
Q  271 ggatatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgcctcgcaagacatgttgaacgtatgt 370  Q
    |||||||  ||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||| || |  |||  |||||||   ||||    
T  37402352 ggatatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgt 37402451  T
Q  371 ttaacataagattgaaaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaattaatt 434  Q
    ||||||||||| |||||||||||| |||||||      ||||||||| ||||||||||||||||    
T  37402452 ttaacataagactgaaaagaacaaacaacagatactgtgcaaatcgcagaagaatgaattaatt 37402515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 73 - 434
Target Start/End: Complemental strand, 37695599 - 37695238
Alignment:
Q  73 ctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggattgc 172  Q
    ||||||||||||||| || | ||||||||||||| ||||||||| |||||||| |||||||||||||||||| |||||||||| ||||| |||||||| |    
T  37695599 ctttcacaaaaccaccttgagggaatcatacctaaaggtcaacagtttaatacgtttggaaatgattcctatgaagggaatactatgttatgtggattcc 37695500  T
Q  173 cattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatcgg 272  Q
    |||| ||||  | |||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||    
T  37695499 cattgtctagattatgcaaaaatgatgaagatctaccaccacattcgacatctgaagatgaagaagaatcaggatttggctggaaagctgtggcaattgg 37695400  T
Q  273 atatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgcctcgcaagacatgttgaacgtatgttt 372  Q
    |||||  ||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||| || |  |||  |||||||   ||||||    
T  37695399 atatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgttt 37695300  T
Q  373 aacataagattgaaaagaacaatcaacagagcaaccgcaaatcgccgaagaatgaattaatt 434  Q
    ||||||||| |||||||||||| |||||||      ||||||||| ||||||||||||||||    
T  37695299 aacataagactgaaaagaacaaacaacagatactgtgcaaatcgcagaagaatgaattaatt 37695238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 73 - 344
Target Start/End: Complemental strand, 37701690 - 37701422
Alignment:
Q  73 ctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggattgc 172  Q
    ||||||||||||||| || | ||||||||||||||||| ||||| ||| |||||||||||||| |||||||| |||| |||||||||||||||||||| |    
T  37701690 ctttcacaaaaccaccttgagggaatcatacctacaggccaacagtttgatacatttggaaataattcctatgaaggaaatacaatgttgtgtggattcc 37701591  T
Q  173 cattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatcgg 272  Q
     ||| ||||| ||||||||||||||||||||||| ||||  |||||||||||||||||||   |||| ||||||||||||||||||||||||||||| ||    
T  37701590 aattgtctaaatcatgcaaaaatgaggaagatcttccacctcattcaacatctgaagatg---aagagtcaggatttggctggaaagcggtagcaatagg 37701494  T
Q  273 atatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatg 344  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37701493 atatgcatgtggggcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaacctcaatg 37701422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 71 - 394
Target Start/End: Complemental strand, 37434716 - 37434393
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    |||||||| | |||||| || | ||| |||||||||| ||||||||||||  |||||||| ||||||||||||| |||| ||||||||||| ||||||||    
T  37434716 acctttcaaacaaccaccttgagggagtcatacctacgggtcaacaatttgctacatttgaaaatgattcctatgaaggaaatacaatgttatgtggatt 37434617  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 270  Q
     ||||| ||||| ||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||  |||    
T  37434616 cccattgtctaaatcatgcaaaaacgagaaagatctgccaccacattcaacatctgaagacgaagaagaatcaggatttggctggaaaacggtagtgatc 37434517  T
Q  271 ggatatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaaccccaatgcctcgcaagacatgttgaacgtatgt 370  Q
    |||||||  ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||    |||| |||||| | || ||    
T  37434516 ggatatggatgtggggcaatatttgggttgctgttgggatataatgtattcttcttcactggaaaaccccaatggcttcttagacttgttgagcatacgt 37434417  T
Q  371 ttaacataagattgaaaagaacaa 394  Q
    ||||||||||| ||||||||||||    
T  37434416 ttaacataagaatgaaaagaacaa 37434393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 71 - 338
Target Start/End: Complemental strand, 37440076 - 37439809
Alignment:
Q  71 acctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggatt 170  Q
    |||||||||||||||||  | | |||||||||||| |||||||||| |||  |||||||||||||||||||||| |||||||||||||||| |||||||     
T  37440076 acctttcacaaaaccaccatgagggaatcatacctgcaggtcaacagtttggtacatttggaaatgattcctatgaagggaatacaatgttatgtggata 37439977  T
Q  171 gccattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatc 270  Q
     ||||| |||||  |||||||||||||||||||||| |||| | |||||||| |||| ||| |||| ||||||||||||||||||||||| || |  |||    
T  37439976 tccattgtctaagccatgcaaaaatgaggaagatcttccaccatattcaacaactgatgatcaagaggaatcaggatttggctggaaagctgtggtgatc 37439877  T
Q  271 ggatatgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaacc 338  Q
    |||||||  ||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  37439876 ggatatggatgtggggcaatattcgggttgctattgggatataatctattcttcttcactggaaaacc 37439809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 76 - 324
Target Start/End: Complemental strand, 37428051 - 37427803
Alignment:
Q  76 tcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggattgccat 175  Q
    |||||||||||| || | |||||||||||||| || ||||| ||| ||||||||||||||||||||||| |||||||||||||||| ||||||||   ||    
T  37428051 tcacaaaaccaccttgagggaatcatacctaccggccaacagtttgatacatttggaaatgattcctatgaagggaatacaatgttatgtggattcatat 37427952  T
Q  176 tctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatcggata 275  Q
    | ||||| |||||||||||||| |||||||  |||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||  ||||    
T  37427951 tgtctaaatcatgcaaaaatgatgaagatcaaccaccacattcaacatctgaagaagaagaggaatcaggatttggctggaaagcggtagtaataagata 37427852  T
Q  276 tgcctgtggtgcaatattcgggttgctcttgggatataatgtattcttc 324  Q
    ||| |||||  ||||||| ||| || |||||||||||| |||| |||||    
T  37427851 tgcatgtgggacaatatttgggatgatcttgggatatattgtactcttc 37427803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 73 - 284
Target Start/End: Original strand, 37383482 - 37383693
Alignment:
Q  73 ctttcacaaaaccactttaaaggaatcatacctacaggtcaacaatttaatacatttggaaatgattcctatcaagggaatacaatgttgtgtggattgc 172  Q
    ||||||||||||||| || | ||||||||||||||||||||||| |||  |||||||||||||||||||| | |||| ||||||||||| |||||||| |    
T  37383482 ctttcacaaaaccaccttgagggaatcatacctacaggtcaacagtttggtacatttggaaatgattcctttgaaggaaatacaatgttatgtggatttc 37383581  T
Q  173 cattctctaattcatgcaaaaatgaggaagatctgccacaacattcaacatctgaagatgaagaagaatcaggatttggctggaaagcggtagcaatcgg 272  Q
    |||| || || |||||||||| ||| ||||||  | | | | ||||||||||| | |||||||| ||||| ||||||||||||||||| || | ||| ||    
T  37383582 cattgtcaaaatcatgcaaaactgatgaagattggtcgccatattcaacatctaatgatgaagaggaatctggatttggctggaaagcagtggtaatagg 37383681  T
Q  273 atatgcctgtgg 284  Q
    |||||| |||||    
T  37383682 atatgcatgtgg 37383693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 531 - 672
Target Start/End: Complemental strand, 37710056 - 37709922
Alignment:
Q  531 tatatatatatcttttaataccaatgtgctatatattgtaagttgttgaacaaataagaaatttatagtgatcaattgctttttggttactttcaagann 630  Q
    ||||||||||| ||||||||||||||||     |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||      
T  37710056 tatatatatatattttaataccaatgtg----ttattgtaagttgttgaacaaataagaaa-ttaaagtgatcaattgcttttttgttactttcaaga-t 37709963  T
Q  631 nnnnnngttgaataaatgatcaagacttaattgcttcaactt 672  Q
          |||||||||||||| |||||||||||||||||||||    
T  37709962 tttattgttgaataaatgat-aagacttaattgcttcaactt 37709922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 531 - 626
Target Start/End: Original strand, 37394481 - 37394576
Alignment:
Q  531 tatatatatatcttttaataccaatgtgctatatattgtaagttgttgaacaaataagaaatttatagtgatcaattgctttttggttactttcaa 626  Q
    ||||||||||||||||| ||||| |||| ||||||||  |||||| |||| ||||||| ||||||||||||||||||||||||  | |||||||||    
T  37394481 tatatatatatcttttagtaccagtgtgttatatatttcaagttgatgaataaataaggaatttatagtgatcaattgcttttatgatactttcaa 37394576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 564 - 672
Target Start/End: Complemental strand, 37531529 - 37531424
Alignment:
Q  564 tattgtaagttgttgaacaaataagaaatttatagtgatcaattgctttttggttactttcaagannnnnnnngttgaataaatgatcaagacttaattg 663  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||||||||| |||||||||||||        |||||||||||||| ||||||||||||    
T  37531529 tattgtaagttgttgaacaaataagaaa-ttaaagtgattaattgcttttttgttactttcaaga-ttttattgttgaataaatgat-aagacttaattg 37531433  T
Q  664 cttcaactt 672  Q
    |||||||||    
T  37531432 cttcaactt 37531424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 564 - 672
Target Start/End: Complemental strand, 37592736 - 37592631
Alignment:
Q  564 tattgtaagttgttgaacaaataagaaatttatagtgatcaattgctttttggttactttcaagannnnnnnngttgaataaatgatcaagacttaattg 663  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||||||||| |||||||||||||        |||||||||||||| ||||||||||||    
T  37592736 tattgtaagttgttgaacaaataagaaa-ttaaagtgattaattgcttttttgttactttcaaga-ttttattgttgaataaatgat-aagacttaattg 37592640  T
Q  664 cttcaactt 672  Q
    |||||||||    
T  37592639 cttcaactt 37592631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 564 - 672
Target Start/End: Complemental strand, 37695095 - 37694990
Alignment:
Q  564 tattgtaagttgttgaacaaataagaaatttatagtgatcaattgctttttggttactttcaagannnnnnnngttgaataaatgatcaagacttaattg 663  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||||||||| |||||||||||||        |||||||||||||| ||||||||||||    
T  37695095 tattgtaagttgttgaacaaataagaaa-ttaaagtgattaattgcttttttgttactttcaaga-ttttattgttgaataaatgat-aagacttaattg 37694999  T
Q  664 cttcaactt 672  Q
    |||||||||    
T  37694998 cttcaactt 37694990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 739 - 806
Target Start/End: Complemental strand, 38869660 - 38869593
Alignment:
Q  739 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  38869660 tcaggcccggccatgagggggtgcaaacagctcaacaaagctgggcctccctcagtcatgggcctcaa 38869593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 16199080 - 16199026
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  16199080 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16199026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 738 - 806
Target Start/End: Complemental strand, 16799624 - 16799556
Alignment:
Q  738 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||| ||||||| |||||||||||||||||||||| |||||| ||||||| ||| |||||||||||||    
T  16799624 atcagccccggctttgagggggtgcaaacagctcaatagagctaggcctccctcagtcatgggcctcaa 16799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 27923897 - 27923951
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  27923897 tgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27923951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 759 - 806
Target Start/End: Original strand, 9364113 - 9364160
Alignment:
Q  759 gtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9364113 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 9364160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 607
Target Start/End: Original strand, 37402566 - 37402636
Alignment:
Q  537 tatatcttttaataccaatgtgctatatattgtaagttgttgaacaaataagaaatttatagtgatcaatt 607  Q
    ||||||||||||||||| | |  ||||||||  |||||||| |||||||||||||||||||||||| ||||    
T  37402566 tatatcttttaataccagtttattatatatttcaagttgttaaacaaataagaaatttatagtgatgaatt 37402636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 740 - 806
Target Start/End: Complemental strand, 40389831 - 40389765
Alignment:
Q  740 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||  |||| ||||||||||||||||||||| |||||||||| ||| |||||| ||||||    
T  40389831 caggcccggccctgagcgggtgcaaacagctcaacagacctgggcctccctcagtcatggacctcaa 40389765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 672
Target Start/End: Complemental strand, 37822126 - 37822032
Alignment:
Q  575 gttgaacaaataagaaatttatagtgatcaattgctttttggttactttcaagannnnnnnngttgaataaatgatcaagacttaattgcttcaactt 672  Q
    |||||||||||| |||||| | |||||||||||||||||| |||||||||| ||        |||||||||||||| |||||||||||||||||||||    
T  37822126 gttgaacaaatatgaaattaa-agtgatcaattgcttttttgttactttcagga-ttttatcgttgaataaatgat-aagacttaattgcttcaactt 37822032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 15480283 - 15480229
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  15480283 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 15480229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 19523105 - 19523159
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  19523105 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 19523159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 34756668 - 34756615
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  34756668 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 34756615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 756 - 800
Target Start/End: Original strand, 7670743 - 7670787
Alignment:
Q  756 ggggtgcaaacagctcaacagagctgggcctccttcaatcatggg 800  Q
    ||||||||||||||||||||||| ||||||||| ||| |||||||    
T  7670743 ggggtgcaaacagctcaacagagttgggcctccctcagtcatggg 7670787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 743 - 787
Target Start/End: Complemental strand, 28822620 - 28822576
Alignment:
Q  743 gcccggctatgagggggtgcaaacagctcaacagagctgggcctc 787  Q
    |||||| | ||||||||||||||||||||||||||| ||||||||    
T  28822620 gcccggttctgagggggtgcaaacagctcaacagagttgggcctc 28822576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 754 - 806
Target Start/End: Original strand, 30853280 - 30853332
Alignment:
Q  754 agggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||  ||||||||||||||||||  |||| ||||||    
T  30853280 agggggtgcaaacagctcaaacgagctgggcctccttcaaggatggacctcaa 30853332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 16592899 - 16592845
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||| ||||||| ||  |||||||||||    
T  16592899 tgagggggtgcaaacagctcaaacgagctggacctcctttaaggatgggcctcaa 16592845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 31881644 - 31881590
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||| ||||||    
T  31881644 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 31881590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 36188073 - 36188019
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||  |||||||||||    
T  36188073 tgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaa 36188019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 593
Target Start/End: Complemental strand, 37531594 - 37531565
Alignment:
Q  564 tattgtaagttgttgaacaaataagaaatt 593  Q
    ||||||||||||||||||||||||||||||    
T  37531594 tattgtaagttgttgaacaaataagaaatt 37531565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 739 - 806
Target Start/End: Original strand, 44708281 - 44708348
Alignment:
Q  739 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  44708281 tcaggcccggctctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 44708348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 555 - 628
Target Start/End: Complemental strand, 14552606 - 14552533
Alignment:
Q  555 tgtgctatatattgtaagttgttgaacaaataagaaatttatagtgatcaattgctttttggttactttcaaga 628  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||| |||||| ||||||    
T  14552606 tgtgctatatattggaagttgttgataaaataagaaatttatagtgatcaattgcttttttgttactatcaaga 14552533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 740 - 803
Target Start/End: Original strand, 48156942 - 48157005
Alignment:
Q  740 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcct 803  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48156942 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcaatcatgggcct 48157005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 735 - 806
Target Start/End: Complemental strand, 53507188 - 53507117
Alignment:
Q  735 agaatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||| ||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  53507188 agaagcaggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 53507117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 737 - 806
Target Start/End: Complemental strand, 43207543 - 43207474
Alignment:
Q  737 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  43207543 aatcaggcccggtcctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 43207474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 739 - 806
Target Start/End: Complemental strand, 9878986 - 9878919
Alignment:
Q  739 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  9878986 tcaggtccggccctgagggggtgcaaacagctcaacagagctgggcctcccttaatcatgggcctcaa 9878919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 50939522 - 50939468
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  50939522 tgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 50939468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 34290928 - 34290874
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||| ||||||||| |||  ||||||||||||    
T  34290928 tgagggggtgcaaacagctcaacagagttgggcctccctcaggcatgggcctcaa 34290874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 54407445 - 54407391
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  54407445 tgaggaggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 54407391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 50258788 - 50258734
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  50258788 tgagggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaa 50258734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 27078872 - 27078819
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  27078872 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27078819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 27084669 - 27084616
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  27084669 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27084616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 36716329 - 36716276
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  36716329 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36716276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 38681401 - 38681348
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  38681401 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38681348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 757 - 806
Target Start/End: Complemental strand, 48720579 - 48720530
Alignment:
Q  757 gggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||| || ||| ||| |||||||||||||    
T  48720579 gggtgcaaacagctcaacagagctgagcttccctcagtcatgggcctcaa 48720530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 54619507 - 54619454
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  54619507 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 54619454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 3954906 - 3954852
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||| ||||||    
T  3954906 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 3954852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 13795199 - 13795253
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||| |||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  13795199 tgagggcgtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 13795253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 786
Target Start/End: Original strand, 11467754 - 11467803
Alignment:
Q  737 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcct 786  Q
    ||||||| | ||| ||||||||||||||||||||| || |||||||||||    
T  11467754 aatcagggctggccatgagggggtgcaaacagctctactgagctgggcct 11467803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 751 - 788
Target Start/End: Complemental strand, 25373679 - 25373642
Alignment:
Q  751 atgagggggtgcaaacagctcaacagagctgggcctcc 788  Q
    ||||||||||||||||||||| || |||||||||||||    
T  25373679 atgagggggtgcaaacagctctactgagctgggcctcc 25373642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 805
Target Start/End: Original strand, 36605862 - 36605911
Alignment:
Q  756 ggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  36605862 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36605911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 737 - 806
Target Start/End: Original strand, 17353756 - 17353825
Alignment:
Q  737 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  17353756 aatcaggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 17353825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 738 - 806
Target Start/End: Complemental strand, 20712020 - 20711952
Alignment:
Q  738 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  20712020 atcaggcccggccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 20711952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 739 - 806
Target Start/End: Original strand, 28075587 - 28075654
Alignment:
Q  739 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||    
T  28075587 tcaggcccggctctgagggggtgcaaacagctcaacagagctaggcttccttcagtcatgggcttcaa 28075654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 740 - 806
Target Start/End: Original strand, 19986966 - 19987032
Alignment:
Q  740 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||  | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  19986966 caggcccggccctaagggggtgcaaacagctcaacagagctgggcctccctcaattatgggcctcaa 19987032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 27788976 - 27788922
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  27788976 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27788922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 737 - 799
Target Start/End: Complemental strand, 235528 - 235466
Alignment:
Q  737 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgg 799  Q
    ||||||||||| |  ||||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  235528 aatcaggcccgtccctgagggggtgcaaacagcttaacagagctgggcctccctcagtcatgg 235466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 23070943 - 23070889
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  23070943 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 23070889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 13727703 - 13727650
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  13727703 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctca 13727650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 12083694 - 12083640
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||| | ||||  |||||||||||    
T  12083694 tgagggggtgcaaacagctcaaacgagctgggccttcctcaaggatgggcctcaa 12083640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 19741277 - 19741223
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||| ||||||    
T  19741277 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 19741223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 756 - 806
Target Start/End: Complemental strand, 30832717 - 30832667
Alignment:
Q  756 ggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  30832717 ggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaa 30832667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 793
Target Start/End: Original strand, 21280345 - 21280386
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaa 793  Q
    ||||||||||||||||||||||  ||||||||||||| ||||    
T  21280345 tgagggggtgcaaacagctcaaacgagctgggcctccctcaa 21280386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 805
Target Start/End: Original strand, 21479296 - 21479349
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||  ||||||||||    
T  21479296 tgagggggtgcaaacagctaaaacgagctgggcctccctcaaggatgggcctca 21479349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 793
Target Start/End: Complemental strand, 27314818 - 27314777
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaa 793  Q
    ||||||||||||||||||||||  ||||||||||||| ||||    
T  27314818 tgagggggtgcaaacagctcaaacgagctgggcctccctcaa 27314777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 740 - 806
Target Start/End: Complemental strand, 47985268 - 47985202
Alignment:
Q  740 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  47985268 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 47985202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 739 - 806
Target Start/End: Complemental strand, 38415175 - 38415108
Alignment:
Q  739 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||| | | |||||||||||||    
T  38415175 tcaggcccggctctgaggggatgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38415108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 48984131 - 48984077
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  48984131 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 48984077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 24525972 - 24525918
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||||| | | |||||||||||||    
T  24525972 tgagggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 24525918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 741 - 806
Target Start/End: Original strand, 25010254 - 25010319
Alignment:
Q  741 aggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||  ||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||    
T  25010254 aggcccggccctgagggggtacaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 25010319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 739 - 806
Target Start/End: Original strand, 19691896 - 19691964
Alignment:
Q  739 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatc-atgggcctcaa 806  Q
    ||||||||| |  ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  19691896 tcaggcccgaccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcaatgggcctcaa 19691964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 755 - 806
Target Start/End: Complemental strand, 20091565 - 20091514
Alignment:
Q  755 gggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  20091565 gggggtgcaaacagctcaatagagctgggcctccctcagtcatgggcctcaa 20091514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 23551359 - 23551305
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||||||||||||||| |||| ||| ||||| |||||||||||||||||    
T  23551359 tgagggggtgcaaacagctcaatagagttggacctccctcaatcatgggcctcaa 23551305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 28749593 - 28749647
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  28749593 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 28749647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 739 - 806
Target Start/End: Complemental strand, 10329710 - 10329643
Alignment:
Q  739 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||   ||||||||||||||||| ||||||| ||| || |||| ||| |||||||||||||    
T  10329710 tcaggcccggtcctgagggggtgcaaacagttcaacagcgctaggtctccctcagtcatgggcctcaa 10329643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 12596483 - 12596429
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||| ||||||    
T  12596483 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggccctcaa 12596429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 738 - 788
Target Start/End: Original strand, 26253067 - 26253117
Alignment:
Q  738 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctcc 788  Q
    |||||| |||||| ||||||||||||||||||||  | |||||||||||||    
T  26253067 atcagggccggctttgagggggtgcaaacagctcttctgagctgggcctcc 26253117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 18777072 - 18777019
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||| ||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  18777072 tgaggaggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 18777019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 740 - 806
Target Start/End: Original strand, 26715931 - 26715997
Alignment:
Q  740 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  26715931 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 26715997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 9045844 - 9045898
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9045844 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 9045898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 27507029 - 27506975
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  27507029 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27506975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 754 - 806
Target Start/End: Original strand, 24410250 - 24410302
Alignment:
Q  754 agggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  24410250 agggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24410302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 10762853 - 10762799
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  10762853 tgaggggatgcaaacagctcaacagagctgggcttccctcaatcatgggcctcaa 10762799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 752 - 805
Target Start/End: Original strand, 4505691 - 4505744
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||| ||||||||||    
T  4505691 tgagggggtgcaaacagctcaaacgagctgggcctccctcaatgatgggcctca 4505744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 761 - 806
Target Start/End: Original strand, 8327488 - 8327533
Alignment:
Q  761 gcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||    
T  8327488 gcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 8327533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 3952911 - 3952965
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  3952911 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 3952965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Original strand, 3155015 - 3155068
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  3155015 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3155068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Original strand, 6964804 - 6964857
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  6964804 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 6964857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 7162689 - 7162743
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  |||||||||||||  |||  |||||||||||    
T  7162689 tgagggggtgcaaacagctcaaacgagctgggcctcccacaaggatgggcctcaa 7162743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 12337743 - 12337689
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  |||||| |||||| ||||  |||||||||||    
T  12337743 tgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaa 12337689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 805
Target Start/End: Original strand, 34693159 - 34693212
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||  ||||||||||    
T  34693159 tgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctca 34693212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 805
Target Start/End: Original strand, 34715571 - 34715624
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||  ||||||||||    
T  34715571 tgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctca 34715624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 738 - 806
Target Start/End: Original strand, 42600582 - 42600650
Alignment:
Q  738 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  42600582 atcaggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 42600650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 752 - 802
Target Start/End: Original strand, 10917206 - 10917256
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcc 802  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  10917206 tgagggggtgcaaacagctcaacagagctgggcctccctcactcatgggcc 10917256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 23606909 - 23606855
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  23606909 tgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 23606855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 737 - 806
Target Start/End: Complemental strand, 23798564 - 23798495
Alignment:
Q  737 aatcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||| |||  ||||||||||| |||||||||||| |||||||||||| ||| |||||||||||||    
T  23798564 aatcaggcctggccttgagggggtgcgaacagctcaacaaagctgggcctccctcagtcatgggcctcaa 23798495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 20003930 - 20003876
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  20003930 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 20003876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 2952526 - 2952473
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  2952526 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 2952473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 3048827 - 3048774
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  3048827 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3048774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 5861049 - 5860996
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  5861049 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 5860996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 738 - 788
Target Start/End: Complemental strand, 45193926 - 45193876
Alignment:
Q  738 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctcc 788  Q
    |||||| |||||| || || |||||||||||||| ||||||||||||||||    
T  45193926 atcagggccggctctggggaggtgcaaacagctctacagagctgggcctcc 45193876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 45472203 - 45472257
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||| |||||||||| ||  |||  |||||||||||    
T  45472203 tgagggggtgcaaacagctcaaccgagctgggccacccccaaggatgggcctcaa 45472257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 805
Target Start/End: Original strand, 30883122 - 30883175
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    |||| |||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  30883122 tgagtgggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 30883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 739 - 806
Target Start/End: Complemental strand, 9173322 - 9173255
Alignment:
Q  739 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  9173322 tcaggcccggccctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 9173255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 739 - 806
Target Start/End: Original strand, 27559446 - 27559513
Alignment:
Q  739 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  27559446 tcaggcccggttttgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27559513  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 1367165 - 1367111
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  1367165 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 1367111  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 13913770 - 13913716
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  13913770 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 13913716  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 40502078 - 40502024
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  40502078 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40502024  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 739 - 802
Target Start/End: Original strand, 44895466 - 44895529
Alignment:
Q  739 tcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcc 802  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  44895466 tcaggctcggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcc 44895529  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 738 - 805
Target Start/End: Complemental strand, 51607741 - 51607674
Alignment:
Q  738 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    |||||||||||  |||||| |||||||||||||||| |||||||||||| | ||||||||||||||||    
T  51607741 atcaggcccggtcatgaggtggtgcaaacagctcaatagagctgggccttcctcaatcatgggcctca 51607674  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 756 - 806
Target Start/End: Original strand, 19955547 - 19955597
Alignment:
Q  756 ggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||||||||||    
T  19955547 ggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 19955597  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 14146217 - 14146271
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||||||||    
T  14146217 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 14146271  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 17168781 - 17168835
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||| |||||||||||||| |||||| ||||||| ||| |||||||||||||    
T  17168781 tgaggggatgcaaacagctcaatagagcttggcctccctcagtcatgggcctcaa 17168835  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 23181723 - 23181777
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||| |||||||||| ||  |||| |||||||||||    
T  23181723 tgagggggtgcaaacagctcaaccgagctgggccacccccaatgatgggcctcaa 23181777  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Complemental strand, 27907002 - 27906949
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  27907002 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27906949  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 805
Target Start/End: Original strand, 44655551 - 44655604
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctca 805  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  44655551 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 44655604  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 752 - 788
Target Start/End: Complemental strand, 5028028 - 5027992
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctcc 788  Q
    ||||||||||||||||||||||| |||||||||||||    
T  5028028 tgagggggtgcaaacagctcaaccgagctgggcctcc 5027992  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 3406335 - 3406389
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  |||||||||||||  |||  |||||||||||    
T  3406335 tgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctcaa 3406389  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 3440485 - 3440431
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  |||||||||||||  |||  |||||||||||    
T  3440485 tgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctcaa 3440431  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 6771708 - 6771762
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| | ||  |||||||||||    
T  6771708 tgagggggtgcaaacagctcaaacgagctgggcctcccttaaggatgggcctcaa 6771762  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 6888481 - 6888535
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||| ||||||||| ||||  |||||||||||    
T  6888481 tgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaa 6888535  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 10912148 - 10912094
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||| ||||||||||  |||||||||||||| |||  |||||||||||    
T  10912148 tgagggggtgcgaacagctcaaacgagctgggcctcctccaaggatgggcctcaa 10912094  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 738 - 788
Target Start/End: Original strand, 12037587 - 12037637
Alignment:
Q  738 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctcc 788  Q
    |||||| ||| || |||||||||||||||||||| || |||||||||||||    
T  12037587 atcagggccgtctttgagggggtgcaaacagctctactgagctgggcctcc 12037637  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 41697333 - 41697279
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||||| ||||    
T  41697333 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcatcaa 41697279  T

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Target: scaffold0039 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 740 - 806
Target Start/End: Original strand, 106379 - 106445
Alignment:
Q  740 caggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||  |||| |||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  106379 caggcccggccctgagagggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 106445  T

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Target: scaffold0027 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 738 - 806
Target Start/End: Original strand, 4147 - 4215
Alignment:
Q  738 atcaggcccggctatgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    |||||| |||||  |||| ||||||||||||||||||||||||||||||||| || |||||||||||||    
T  4147 atcagggccggccctgagagggtgcaaacagctcaacagagctgggcctcctccagtcatgggcctcaa 4215  T

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Target: scaffold0070 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 1023 - 1077
Alignment:
Q  752 tgagggggtgcaaacagctcaacagagctgggcctccttcaatcatgggcctcaa 806  Q
    ||||||||||||||||||||||  ||||||||||||| ||||  |||| ||||||    
T  1023 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 1077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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