View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_low_20 (Length: 464)

Name: NF0913_low_20
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_low_20
NF0913_low_20
[»] chr4 (17 HSPs)
chr4 (212-365)||(38147357-38147517)
chr4 (239-359)||(12639723-12639843)
chr4 (247-359)||(28103806-28103918)
chr4 (246-335)||(917683-917772)
chr4 (239-355)||(43012754-43012870)
chr4 (268-355)||(23643431-23643518)
chr4 (268-333)||(12639208-12639273)
chr4 (239-355)||(54714873-54714989)
chr4 (271-333)||(28104360-28104421)
chr4 (271-333)||(919115-919176)
chr4 (239-333)||(43013130-43013224)
chr4 (239-307)||(12629834-12629902)
chr4 (326-357)||(918651-918682)
chr4 (319-361)||(23037996-23038038)
chr4 (246-307)||(25163430-25163491)
chr4 (300-360)||(8497099-8497159)
chr4 (320-360)||(29864749-29864789)
[»] chr2 (9 HSPs)
chr2 (240-359)||(4329599-4329718)
chr2 (239-359)||(39865300-39865420)
chr2 (239-359)||(29770766-29770886)
chr2 (227-355)||(30674429-30674557)
chr2 (240-355)||(9074598-9074713)
chr2 (242-333)||(4330136-4330226)
chr2 (251-355)||(9914204-9914308)
chr2 (271-333)||(29771299-29771360)
chr2 (239-333)||(39864768-39864860)
[»] chr3 (10 HSPs)
chr3 (64-211)||(45395411-45395560)
chr3 (239-359)||(23566891-23567011)
chr3 (241-355)||(39737730-39737844)
chr3 (242-355)||(785770-785883)
chr3 (268-355)||(30385749-30385836)
chr3 (271-333)||(39737232-39737293)
chr3 (269-355)||(53153855-53153941)
chr3 (241-333)||(23566432-23566522)
chr3 (95-161)||(50470355-50470421)
chr3 (260-333)||(53153517-53153590)
[»] chr7 (12 HSPs)
chr7 (239-359)||(31166956-31167076)
chr7 (251-357)||(21971546-21971651)
chr7 (260-343)||(27596002-27596084)
chr7 (236-355)||(28750927-28751045)
chr7 (360-449)||(36998070-36998156)
chr7 (240-355)||(38916392-38916507)
chr7 (251-355)||(27230474-27230578)
chr7 (238-353)||(15577468-15577578)
chr7 (240-333)||(21972092-21972184)
chr7 (247-355)||(32741787-32741895)
chr7 (240-333)||(38916045-38916138)
chr7 (300-360)||(21948149-21948209)
[»] scaffold0064 (1 HSPs)
scaffold0064 (64-212)||(19902-20052)
[»] chr8 (8 HSPs)
chr8 (243-359)||(26759207-26759323)
chr8 (248-359)||(146644-146755)
chr8 (236-355)||(308301-308420)
chr8 (247-355)||(186682-186790)
chr8 (239-330)||(187049-187140)
chr8 (271-333)||(147190-147251)
chr8 (301-355)||(25277141-25277195)
chr8 (300-360)||(43724158-43724218)
[»] chr6 (7 HSPs)
chr6 (107-211)||(17922887-17922991)
chr6 (241-355)||(8700890-8701004)
chr6 (268-355)||(12307301-12307388)
chr6 (268-355)||(7727381-7727468)
chr6 (246-355)||(604984-605096)
chr6 (239-333)||(12306970-12307064)
chr6 (239-333)||(8701263-8701357)
[»] chr5 (7 HSPs)
chr5 (239-359)||(39121836-39121956)
chr5 (95-211)||(3623478-3623594)
chr5 (247-355)||(14393983-14394091)
chr5 (239-354)||(20983543-20983658)
chr5 (247-355)||(25672272-25672380)
chr5 (242-333)||(20983842-20983933)
chr5 (239-333)||(14394344-14394438)
[»] chr1 (2 HSPs)
chr1 (247-355)||(40888792-40888900)
chr1 (239-307)||(23269946-23270014)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 212 - 365
Target Start/End: Original strand, 38147357 - 38147517
Alignment:
Q  212 atttaataatttgggcaatgttaaccag-------gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaatt 304  Q
    |||||||||||||||||||| ||||| |       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38147357 atttaataatttgggcaatgctaaccggtgctttcgggcactggataaggaacagtaaatagtcaataaataaatggatctcacttaattcatctcaatt 38147456  T
Q  305 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctctgatg 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38147457 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctttgatg 38147517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 12639843 - 12639723
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 338  Q
    |||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  12639843 ggggtactggataaggaacaataaataggcaataaataaatggatctcacttaattcacctcaattaaagtgtaaaatatgtcaactaattaaaaataat 12639744  T
Q  339 aaaagctatattcaatactct 359  Q
    |||||||||||||||||||||    
T  12639743 aaaagctatattcaatactct 12639723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 247 - 359
Target Start/End: Original strand, 28103806 - 28103918
Alignment:
Q  247 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 346  Q
    |||||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28103806 ggataaggaacaataaataatcattaaataaatggatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 28103905  T
Q  347 tattcaatactct 359  Q
    |||||||||||||    
T  28103906 tattcaatactct 28103918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 917683 - 917772
Alignment:
Q  246 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 335  Q
    ||||||| ||||| ||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  917683 tggataaagaacaataaatagtcaataaataaatgaatctaagttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 917772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 239 - 355
Target Start/End: Original strand, 43012754 - 43012870
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 338  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  43012754 ggggcactggataaggaacaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 43012853  T
Q  339 aaaagctatattcaata 355  Q
    ||| | |||||||||||    
T  43012854 aaatgttatattcaata 43012870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 23643431 - 23643518
Alignment:
Q  268 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 355  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||    
T  23643431 caataaataaattgatctcacttcatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatattcaata 23643518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 12639208 - 12639273
Alignment:
Q  268 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||| |||||||||||||||||||    
T  12639208 caataaataaatggatctcacttaatttacctcaattaatgtgtaaaatatgtcaactaattaaaa 12639273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 54714989 - 54714873
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 338  Q
    |||||| ||||||| ||| |  |||||| |||||||||||| ||| |||||| ||| |||| ||||||||||||| |||| | || ||||||||| ||||    
T  54714989 ggggcattggataaagaataaaaaataggcaataaataaatggatttcacttgatttatcttaattaaagtgtaaaatattttaaataattaaaattaat 54714890  T
Q  339 aaaagctatattcaata 355  Q
    ||| | |||||||||||    
T  54714889 aaatgttatattcaata 54714873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 28104421 - 28104360
Alignment:
Q  271 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  28104421 taaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 28104360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 919176 - 919115
Alignment:
Q  271 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    |||||||||  |||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  919176 taaataaatgaatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 919115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 43013224 - 43013130
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  43013224 ggggcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 43013130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 12629834 - 12629902
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 307  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||| || | ||| | ||||||||||    
T  12629834 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacatgatttacctcaattaaa 12629902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 357
Target Start/End: Original strand, 918651 - 918682
Alignment:
Q  326 aattaaaaataataaaagctatattcaatact 357  Q
    ||||||||||||||||||||||||||||||||    
T  918651 aattaaaaataataaaagctatattcaatact 918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 23038038 - 23037996
Alignment:
Q  319 gtcaactaattaaaaataataaaagctatattcaatactctct 361  Q
    ||||||||||||||| ||||||||| | |||||||||||||||    
T  23038038 gtcaactaattaaaattaataaaagttgtattcaatactctct 23037996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 25163430 - 25163491
Alignment:
Q  246 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 307  Q
    ||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  25163430 tggataaggaacattaaatagacaataaatgaatagatcttactttatttacctcaattaaa 25163491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 8497099 - 8497159
Alignment:
Q  300 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctc 360  Q
    |||||||| ||||| ||| ||||||||||||| | ||||||||  | ||||||||||||||    
T  8497099 caattaaaatgtaaaataggtcaactaattaagattaataaaaattctattcaatactctc 8497159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 29864749 - 29864789
Alignment:
Q  320 tcaactaattaaaaataataaaagctatattcaatactctc 360  Q
    |||||||||||| | |||||||| |||||||||||||||||    
T  29864749 tcaactaattaagattaataaaaactatattcaatactctc 29864789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 240 - 359
Target Start/End: Original strand, 4329599 - 4329718
Alignment:
Q  240 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 339  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329599 gggcactggataaggaacagtaaatagttaataaataaatagatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 4329698  T
Q  340 aaagctatattcaatactct 359  Q
    ||||||||||||||||||||    
T  4329699 aaagctatattcaatactct 4329718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 39865420 - 39865300
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 338  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39865420 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 39865321  T
Q  339 aaaagctatattcaatactct 359  Q
    |||||||||||||||||||||    
T  39865320 aaaagctatattcaatactct 39865300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 239 - 359
Target Start/End: Original strand, 29770766 - 29770886
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 338  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  29770766 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcagttaaagtataatatatgtcaactaattaaaaataat 29770865  T
Q  339 aaaagctatattcaatactct 359  Q
    |||||||||| ||||||||||    
T  29770866 aaaagctataatcaatactct 29770886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 355
Target Start/End: Complemental strand, 30674557 - 30674429
Alignment:
Q  227 caatgttaaccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaacta 326  Q
    ||||| ||||| ||||||| |||||| ||||| | ||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||    
T  30674557 caatgctaaccgggggcaccggataaagaacaattaataagcaataaataaatagatctcacttgatttatcttaattaaaatgtaaaatatttcaacta 30674458  T
Q  327 attaaaaataataaaagctatattcaata 355  Q
    ||||||| ||||||| | |||||||||||    
T  30674457 attaaaattaataaatgttatattcaata 30674429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 355
Target Start/End: Original strand, 9074598 - 9074713
Alignment:
Q  240 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 339  Q
    |||||| |||||| ||||| ||||||| |||||||||||| ||||||||||  || | || ||||||||||||| |||| |||||||||||||| |||||    
T  9074598 gggcaccggataaagaacaataaatagacaataaataaatggatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 9074697  T
Q  340 aaagctatattcaata 355  Q
    || | |||||||||||    
T  9074698 aatgttatattcaata 9074713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 4330226 - 4330136
Alignment:
Q  242 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    ||||||||||||||||| | ||||  || ||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  4330226 gcactggataaggaacaattaatatgcattaaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatgttaactaattaaaa 4330136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 9914204 - 9914308
Alignment:
Q  251 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 350  Q
    |||||||| |||||||  |||||||||||  ||||||||| ||| |  | ||||||||||||| |||| |||||||| ||||| ||||||| ||||||||    
T  9914204 aaggaacaataaataggtaataaataaatgaatctcacttgatttactttaattaaagtgtaaaatatttcaactaactaaaattaataaatgctatatt 9914303  T
Q  351 caata 355  Q
    |||||    
T  9914304 caata 9914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 29771360 - 29771299
Alignment:
Q  271 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    |||||||||  |||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  29771360 taaataaatgaatctcacttaattcatctcaattata-tgtaaaatatgtcaactaattaaaa 29771299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 39864768 - 39864860
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    ||||||||||||||||| || | ||||  || |||||||||  |||||| |||||||||||||| |||| |||||  |||||||| |||||||||    
T  39864768 ggggcactggataagga-caattaatatgcattaaataaatgaatctcatttaattcatctcaaataaa-tgtaaactatgtcaattaattaaaa 39864860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 45395411 - 45395560
Alignment:
Q  64 aacgagcagaacctgtggacatcat-cggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatag 161  Q
    ||||||| |||  |||||||||||  |||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| ||||||     
T  45395411 aacgagcggaatttgtggacatcaagcggtggaaaggaaaacatgggatgagagaatataattagttaatggaaagaaaaatatccaaggatggtaataa 45395510  T
Q  162 catcgtgggtttctcgtgcatggtttatgtcgtgtaataaagcattttcc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45395511 catcgtgggtttctcgtgcatggtttatgtcgtgtaataaagcattttcc 45395560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 23567011 - 23566891
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 338  Q
    |||||||||||||||||||| |||||||| | |||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23567011 ggggcactggataaggaacaataaatagtaattaaataaatgaatatcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 23566912  T
Q  339 aaaagctatattcaatactct 359  Q
    |||||||||||||||||||||    
T  23566911 aaaagctatattcaatactct 23566891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 39737844 - 39737730
Alignment:
Q  241 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataa 340  Q
    |||||||||||||||||| |||||||| | ||||||||| ||||| | ||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  39737844 ggcactggataaggaacaataaatagtaattaaataaatagatcttatttaattcatctcaattaaaatataatatatgttaactaattaaaaataataa 39737745  T
Q  341 aagctatattcaata 355  Q
    |||||||||||||||    
T  39737744 aagctatattcaata 39737730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 355
Target Start/End: Complemental strand, 785883 - 785770
Alignment:
Q  242 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaa 341  Q
    |||||| |||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||| ||||||||| ||||  ||| ||||||||| ||||||     
T  785883 gcactgaataaggaacattaaataggcaataaataaatggatctcacttgatttaccttaatcaaagtgtaaaatattgcaattaattaaaattaataat 785784  T
Q  342 agctatattcaata 355  Q
     |||||||||||||    
T  785783 tgctatattcaata 785770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 30385836 - 30385749
Alignment:
Q  268 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 355  Q
    |||||||||||| ||||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  30385836 caataaataaatggatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgatatattcaata 30385749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 39737232 - 39737293
Alignment:
Q  271 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    |||||||||  |||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  39737232 taaataaatgaatctcacttaatccatctcaattaaa-tgtaaaatatgtcaactaattaaaa 39737293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 53153941 - 53153855
Alignment:
Q  269 aataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 355  Q
    |||||||| ||  ||||||||| ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  53153941 aataaatagatgaatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 53153855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 333
Target Start/End: Original strand, 23566432 - 23566522
Alignment:
Q  241 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    ||||||||||||| |||| | ||||  || |||||||||  |||| |||||||||||||||| |||| |||||  ||||||||||||||||||    
T  23566432 ggcactggataag-aacaattaatatgcattaaataaataaatcttacttaattcatctcaaataaa-tgtaaactatgtcaactaattaaaa 23566522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 50470355 - 50470421
Alignment:
Q  95 aaggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatag 161  Q
    ||||||||||||||| ||||||||  ||||| |||| ||||| | |||||||||| ||| |||||||    
T  50470355 aaggaaaacatggggagagagaattcaattagttaacggaaatataaacatccaaagatggtaatag 50470421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 53153517 - 53153590
Alignment:
Q  260 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    ||||||| |||||||||||| ||| ||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  53153517 taaataggcaataaataaatggatttcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 53153590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 31167076 - 31166956
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 338  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31167076 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 31166977  T
Q  339 aaaagctatattcaatactct 359  Q
    |||||||||||||||||||||    
T  31166976 aaaagctatattcaatactct 31166956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 357
Target Start/End: Original strand, 21971546 - 21971651
Alignment:
Q  251 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 350  Q
    |||||||| |||||| | | ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21971546 aaggaacaataaataataattaaataaat-gatctcacttaactcatctcaattaaagtataatatatgtcaactaattaaaaataataaaagctatatt 21971644  T
Q  351 caatact 357  Q
    |||||||    
T  21971645 caatact 21971651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 27596002 - 27596084
Alignment:
Q  260 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaag 343  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27596002 taaatagccaataaataaatggatctcacttaattcatctcaattaaagtgtaatata-gtcaactaattaaaaataataaaag 27596084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 236 - 355
Target Start/End: Complemental strand, 28751045 - 28750927
Alignment:
Q  236 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 335  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  28751045 ccaggggcactggataaggaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 28750946  T
Q  336 aataaaagctatattcaata 355  Q
    |||||| | |||||||||||    
T  28750945 aataaatg-tatattcaata 28750927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 360 - 449
Target Start/End: Complemental strand, 36998156 - 36998070
Alignment:
Q  360 ctgatgaggtttgccttagcagcttttcacattaagtccttcaaagccttacctgaaaacagccatatgttaatgttagattttacaacc 449  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||   || |||||||||||||||||    
T  36998156 ctgatgaggtttgccttagcagctttccacattaaatccttcaaagccttacctgaaaacagccata---tattgttagattttacaacc 36998070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 355
Target Start/End: Complemental strand, 38916507 - 38916392
Alignment:
Q  240 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 339  Q
    ||||||||||||| ||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||||||| |||| |||||||||||||| |||||    
T  38916507 gggcactggataaagaacaataaatagacaataaataaatggatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 38916408  T
Q  340 aaagctatattcaata 355  Q
    || | |||||| ||||    
T  38916407 aatgttatatttaata 38916392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 27230474 - 27230578
Alignment:
Q  251 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 350  Q
    |||||||| | ||||| ||||||||||||  |||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  27230474 aaggaacaattaatagacaataaataaatgaatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatatt 27230573  T
Q  351 caata 355  Q
    |||||    
T  27230574 caata 27230578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 15577468 - 15577578
Alignment:
Q  238 aggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataa 337  Q
    ||||||||||||||||||||| ||||||| |||     |||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |||    
T  15577468 aggggcactggataaggaacaataaatagacaa-----aaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaattaa 15577562  T
Q  338 taaaagctatattcaa 353  Q
    |||| | |||||||||    
T  15577563 taaatgatatattcaa 15577578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 333
Target Start/End: Complemental strand, 21972184 - 21972092
Alignment:
Q  240 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    ||||||||||||||||||| | || |  || |||||||||  |||||||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  21972184 gggcactggataaggaacaattaaaatgcattaaataaatgaatctcacttaattcatcttaattaaa-tgtaaaatatgtcaactaattaaaa 21972092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 355
Target Start/End: Complemental strand, 32741895 - 32741787
Alignment:
Q  247 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 346  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||  || | || ||||||||| ||| |||| ||||||| |||||| ||||||| ||||    
T  32741895 ggataatgaacaataaataagcaataaataaatggatctcacttggtttaccttaattaaagtataaaatatttcaactatttaaaattaataaatgcta 32741796  T
Q  347 tattcaata 355  Q
    |||||||||    
T  32741795 tattcaata 32741787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 38916045 - 38916138
Alignment:
Q  240 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    |||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  38916045 gggcactggataagaaataataaataggcaataaataaatagatctcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 38916138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 21948149 - 21948209
Alignment:
Q  300 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctc 360  Q
    |||| ||| ||||| ||| ||||||||||||||| |||||||| || ||||||||||||||    
T  21948149 caatcaaaatgtaaaataagtcaactaattaaaattaataaaaactctattcaatactctc 21948209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 19902 - 20052
Alignment:
Q  64 aacgagcagaacctgtggacatcat-cggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatag 161  Q
    ||||||| |||  |||||||||||  |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  |||||     
T  19902 aacgagcggaatttgtggacatcaagcggtggaaaggaaaacatgggatgagagaatataatcaattaatggaaagaaaaacatccaaggatgataataa 20001  T
Q  162 catcgtgggtttctcgtgcatggtttatgtcgtgtaataaagcattttcca 212  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20002 catcgtggctttctcgtgcatggtttatgtcgtgtaataaagcattttcca 20052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 243 - 359
Target Start/End: Original strand, 26759207 - 26759323
Alignment:
Q  243 cactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaa 342  Q
    |||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  26759207 cactggataaggaacaataaatagtaattaaataaatggatctcacttaattcatctcaattaaagtataatatatgccaactaattaaaaataataaaa 26759306  T
Q  343 gctatattcaatactct 359  Q
    |||||||| ||||||||    
T  26759307 gctatattaaatactct 26759323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 248 - 359
Target Start/End: Original strand, 146644 - 146755
Alignment:
Q  248 gataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctat 347  Q
    ||||| ||||| ||||||| || ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  146644 gataatgaacaataaatagccattaaataaatggatctcactttattaatctcaattaaagtgtaatatatgtcaactaattaaaattaataaaaactat 146743  T
Q  348 attcaatactct 359  Q
    ||||||||||||    
T  146744 attcaatactct 146755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 308301 - 308420
Alignment:
Q  236 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 335  Q
    |||||||||| |||||| ||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  308301 ccaggggcaccggataatgaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 308400  T
Q  336 aataaaagctatattcaata 355  Q
    |||||| | |||||||||||    
T  308401 aataaatgttatattcaata 308420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 355
Target Start/End: Original strand, 186682 - 186790
Alignment:
Q  247 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 346  Q
    |||||||||||| |||||||  ||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||| ||||||| | ||    
T  186682 ggataaggaacaataaatagctaataaataaatggatctcacttgatttatcttaattaaattgtaaaatatttcaactaattaaaattaataaatgtta 186781  T
Q  347 tattcaata 355  Q
    |||||||||    
T  186782 tattcaata 186790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 330
Target Start/End: Complemental strand, 187140 - 187049
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaatta 330  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||||| ||| || | || ||||||||||  ||||| ||||||||||||    
T  187140 ggggcactggataagaaataataaataggcaataaataaatgaatctcaattagtttacctaaattaaagtgagatataagtcaactaatta 187049  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 147251 - 147190
Alignment:
Q  271 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    |||||| || ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||    
T  147251 taaatatatggatctcacttaattcatcttaattaaa-tataaaatatgtcaactaattaaaa 147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 25277195 - 25277141
Alignment:
Q  301 aattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 355  Q
    ||||||||||| | |||| | |||||||||||| ||||||| |||||||||||||    
T  25277195 aattaaagtgtgaaatattttaactaattaaaattaataaatgctatattcaata 25277141  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 43724218 - 43724158
Alignment:
Q  300 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctc 360  Q
    |||| ||| ||||| ||| ||||||||||||| | |||||||| || ||||||||||||||    
T  43724218 caatcaaaatgtaaaataagtcaactaattaagattaataaaaactctattcaatactctc 43724158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 17922887 - 17922991
Alignment:
Q  107 gggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgcatggtttatgtcgtgtaataaagcat 206  Q
    |||||||||||||||||||  |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922887 gggtgagagaatataattagctaatggaaagaaaaacatccaagggtggtaatagcatcgtgggtttctcgtgcatggtttatgtcgtgtaataaagcat 17922986  T
Q  207 tttcc 211  Q
    |||||    
T  17922987 tttcc 17922991  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 355
Target Start/End: Original strand, 8700890 - 8701004
Alignment:
Q  241 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataa 340  Q
    ||||| |||||||||||| ||||||| ||||||||| || |||||||||| ||| | || ||||||||||||| |||| | |||||||||||| ||||||    
T  8700890 ggcaccggataaggaacaataaataggcaataaatagatggatctcacttgatttaccttaattaaagtgtaaaatattttaactaattaaaattaataa 8700989  T
Q  341 aagctatattcaata 355  Q
    | | |||||||||||    
T  8700990 atgttatattcaata 8701004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 12307388 - 12307301
Alignment:
Q  268 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 355  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  12307388 caataaataaatagatctcacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 12307301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 7727468 - 7727381
Alignment:
Q  268 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 355  Q
    |||||||||||||||||||||||  || | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  7727468 caataaataaattgatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 7727381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 355
Target Start/End: Original strand, 604984 - 605096
Alignment:
Q  246 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaac---taattaaaaataataaaa 342  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||| ||| |||| |||||   ||||||||| |||||||     
T  604984 tggataaggaacaataaataggcaataaataaatggatctcacttgatttaccttaattaaagtataaaatatttcaactaataattaaaattaataaat 605083  T
Q  343 gctatattcaata 355  Q
    | |||||||||||    
T  605084 gttatattcaata 605096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 12306970 - 12307064
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||| | || ||| | || ||||||||||  ||||| |||||||||||||||    
T  12306970 ggggcactggataagaaataataaatagacaataaataaatgaatcttaattgatttacctaaattaaagtgagatataagtcaactaattaaaa 12307064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 8701357 - 8701263
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    |||||||||| |||| || | ||||||| ||||||||||||  |||||| || ||| |  | ||||||||||  ||||| |||||||||||||||    
T  8701357 ggggcactggttaagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaactaattaaaa 8701263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 39121956 - 39121836
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 338  Q
    |||||||||||||||||||| |||||||| | |||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  39121956 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaagtataatatatgtcaactaattaaaaataat 39121857  T
Q  339 aaaagctatattcaatactct 359  Q
    ||||| |||||||||||||||    
T  39121856 aaaagttatattcaatactct 39121836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 3623478 - 3623594
Alignment:
Q  95 aaggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgcatggtttatgtcgt 194  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| | |||||||| | ||||| |||||||||||||||| | ||||    
T  3623478 aaggaaaatatggggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgcatggtttctatcgt 3623577  T
Q  195 gtaataaagcattttcc 211  Q
      |||||||||||||||    
T  3623578 caaataaagcattttcc 3623594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 355
Target Start/End: Original strand, 14393983 - 14394091
Alignment:
Q  247 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 346  Q
    |||||||||||| ||||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||  ||||||| ||||    
T  14393983 ggataaggaacaataaataagcaataaataaatggatctcacttgatttatcttaattaaaatgtaaaatatttcaactaattaaatttaataaatgcta 14394082  T
Q  347 tattcaata 355  Q
    |||||||||    
T  14394083 tattcaata 14394091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 354
Target Start/End: Original strand, 20983543 - 20983658
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 338  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  20983543 ggggcactggataagaaaaaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 20983642  T
Q  339 aaaagctatattcaat 354  Q
    ||| | ||||||||||    
T  20983643 aaatgttatattcaat 20983658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 355
Target Start/End: Original strand, 25672272 - 25672380
Alignment:
Q  247 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 346  Q
    |||||||||||| | ||||  |||||||||||| ||||||||||  || || | ||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  25672272 ggataaggaacaatgaatatgcaataaataaatggatctcacttggtttatattaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 25672371  T
Q  347 tattcaata 355  Q
    |||| ||||    
T  25672372 tatttaata 25672380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 333
Target Start/End: Complemental strand, 20983933 - 20983842
Alignment:
Q  242 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    |||||||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  20983933 gcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 20983842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 14394438 - 14394344
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 333  Q
    ||||||||| ||||| || | ||||||| ||||||||||||  |||||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  14394438 ggggcactgaataagaaataataaatagacaataaataaatgaatctcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 14394344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 247 - 355
Target Start/End: Original strand, 40888792 - 40888900
Alignment:
Q  247 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 346  Q
    ||||||| |||| | ||||| ||||| |||||| ||||| |||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  40888792 ggataagaaacaattaataggcaatacataaatggatctaacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 40888891  T
Q  347 tattcaata 355  Q
    |||||||||    
T  40888892 tattcaata 40888900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 23269946 - 23270014
Alignment:
Q  239 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 307  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  23269946 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacttgatttacctcaattaaa 23270014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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