View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_22 (Length: 435)
Name: NF0913_low_22
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 21852089 - 21852468
Alignment:
| Q |
14 |
gaacactattagagtgcataaaatttgactcaagagcttaaataagcatttgttcaaatatgcacttatttgaaggnnnnnnnnnnttaaccctgtatat |
113 |
Q |
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| T |
21852089 |
gaacactattagagtgcataaaatttgactcaaaagcttaaataagcacttgttcaaatatgcacttatttgaaggaaaaaaa---ttaactctgtatat |
21852185 |
T |
|
| Q |
114 |
gtgagtaaccatgcaattcatctgcttcagcgttgtcttcatattgttccatctgtttgtaagggaccaaggaatctaaccctctttatgaaatgctaaa |
213 |
Q |
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| T |
21852186 |
gtgagtaaccatgcaattcatctacttcagcgttgtcttcatattgttccatctgtttgtaaaggaccaaggaatctaaccctctttatgaaatgctaag |
21852285 |
T |
|
| Q |
214 |
accaccaaggaggagtctgtttctaatcaaatactgtgtcaattgttttgataagccaactctatagctcttaaggcatcactgatttcagcaaggtaag |
313 |
Q |
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| T |
21852286 |
accaccaaggaggagtctgtttctaaccaaatattgtgtcaattgttttgataagccaactctatggctcttaaggcaccactgatttcagc-------- |
21852377 |
T |
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| Q |
314 |
agtttgagtaaccaagaggttcagtaaagcagcaaagaaaatctacttcattgttcctaaaaatgcctccacaacttaagtttcctggatttccaatgga |
413 |
Q |
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| T |
21852378 |
-------------aagaggttcagtaaagcagcaaagaaaatctgcttcattgttcctaaaaatgcctccacaacttaagtttcctggatttccaatgga |
21852464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 106 - 368
Target Start/End: Original strand, 20023661 - 20023923
Alignment:
| Q |
106 |
ctgtatatgtgagtaaccatgcaattcatctgcttcagcgttgtcttcatattgttccatctgtttgt-aagggaccaaggaatctaaccctctttatga |
204 |
Q |
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|||||||||||||| ||| |||||| ||||||||| | | ||||||| || |||| |||||| || | ||| |||||||| ||||| ||||| |||||| |
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| T |
20023661 |
ctgtatatgtgagttacc-tgcaatacatctgctttatctttgtcttgatgttgtgccatctattccttaagagaccaagggatctagccctccttatga |
20023759 |
T |
|
| Q |
205 |
aatgctaaaaccaccaaggaggagtctgtttctaatcaaatactgtgtcaattgttttgataagccaactctatagctcttaaggcatcactgatttcag |
304 |
Q |
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|| ||||| ||||||||||| || ||||||||||| ||||| |||| || || ||||||||||||| ||||||||||||||| ||| |||||||||||| |
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| T |
20023760 |
aacgctaagaccaccaaggaagaatctgtttctaaccaaatgatgtgccagttattttgataagccagctctatagctcttaaagcaccactgatttcag |
20023859 |
T |
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| Q |
305 |
caaggtaagagtttgagtaaccaagaggttcagtaaagcagcaaagaaaatctacttcattgtt |
368 |
Q |
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||||| ||||||||| ||||||| |||| |||| ||||||||||||||||||| |||||||||| |
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| T |
20023860 |
caaggaaagagtttgtgtaaccatgaggctcagcaaagcagcaaagaaaatctgcttcattgtt |
20023923 |
T |
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