View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_23 (Length: 419)
Name: NF0913_low_23
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_23 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 161 - 419
Target Start/End: Complemental strand, 8631124 - 8630867
Alignment:
| Q |
161 |
ggataatctttcttgatcaatcacactttcatcatcagaacctaccaataagaagctcaagaaaaagacagttccaactatttattatgcctcgtacgtt |
260 |
Q |
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| T |
8631124 |
ggataatctttcttaatcaatcacactttcatcatcagaacctaccaataagaagctcaagaaaaagacagttccaactatttattatgcctcgtacgtt |
8631025 |
T |
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| Q |
261 |
ttttcttcttcatttcttaccattgctcaatttataaattgttaccttagattgttccagaatttcaatgcctttctctatatcctaaaatttaactaca |
360 |
Q |
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| T |
8631024 |
tttt-ttcttcatttcttaccattgctcaatttataaattgttaccttagattgttccagaatttcaatgcctttctctatatcctaaaatttaactaca |
8630926 |
T |
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| Q |
361 |
nnnnnnnnnnnnnnnnnctcatgtactaggagaacacactcacaaattactcaattggt |
419 |
Q |
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| T |
8630925 |
ttttttgttttgattttctcatgtactaggagaacacactcacaaattactcaattggt |
8630867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 128
Target Start/End: Complemental strand, 8631191 - 8631160
Alignment:
| Q |
97 |
tcctttaggtatgtatcgcccttcaaattcca |
128 |
Q |
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| T |
8631191 |
tcctttaggtatgtatcgcccttcaaattcca |
8631160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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