View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_24 (Length: 415)
Name: NF0913_low_24
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 245 - 406
Target Start/End: Complemental strand, 45713139 - 45712978
Alignment:
| Q |
245 |
gaagatgactacccaagcaaccgttgtgaacaaatccagagatcaaaagcttctcttctcttctataataataagaaatgagaggtagaacattggggtg |
344 |
Q |
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| T |
45713139 |
gaagatgactacccaagcaaccgttgtgaacaaatccagagatcaaaagcttctcttctcttctatagtaataagaaatgagaggtagaacattggggtg |
45713040 |
T |
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| Q |
345 |
gttaaggtttcctaaccttctcatgtgctcatggaactcttctctcggtacattgttcatct |
406 |
Q |
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| T |
45713039 |
gttaaggtttcctaaccttctcatgtgctcatggaactcttctctcggtacattgttcatct |
45712978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 45713339 - 45713215
Alignment:
| Q |
30 |
acaatcacacttgggagtgcactgtatagataagacaaaccccttgctacacctttcactattttcaaacgggttccccaatcaagtcctggcttctcat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45713339 |
acaatcacacttgggagtgcactgtatagataagacaaaccccttgctacacctttcactattttcaaacgggttccccaatcaagtcctggcttctcat |
45713240 |
T |
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| Q |
130 |
agttgtggttacctgtaatgtaaac |
154 |
Q |
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| T |
45713239 |
agttgtggttacctgtaatgtaaac |
45713215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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