View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_27 (Length: 402)
Name: NF0913_low_27
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 48439512 - 48439161
Alignment:
| Q |
28 |
caaaaccaaggtaatcaatatgcattattcactctatagtggagatgtaggcatatttggccaagctacgtgatcaaattatgtgttttctgttttcatt |
127 |
Q |
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| T |
48439512 |
caaaaccaaggtaatcaatatgcattattcactctatagtggagacgtaggcatatttggccaa-------------attatgtgttttctgttttcatt |
48439426 |
T |
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| Q |
128 |
ttcatatatgttttcttttgaatcatacttgctgttctaacatggaataattaattaacaaacttgtaggtgttgagggatggaaaatggactgaacaag |
227 |
Q |
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| T |
48439425 |
ttcatatatgttttcttttgaatcatacttgctgttctaacatggaataattaattaacaaacttgtaggtgttgagggatggaaaatggactgaacaag |
48439326 |
T |
|
| Q |
228 |
aggcggcaattttggtgccaggagatttagtgagcataaagctgggagatattgtcccagctgatgctcgcctcttggaaggagatgcccttaagattga |
327 |
Q |
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| T |
48439325 |
aggcggcaattttagtgccaggagatttagtgagcataaagctgggagacattgtcccagctgatgctcgcctcttggaaggagatgcccttaagattga |
48439226 |
T |
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| Q |
328 |
ccaatctgcactcactggtgagtcacttccagttaccaagaaccctggtgaggaagtcttctctg |
392 |
Q |
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| T |
48439225 |
ccaatctgcactcactggtgagtcacttccagttaccaagaaccctggtgatgaagtcttctctg |
48439161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 191 - 392
Target Start/End: Complemental strand, 21982895 - 21982694
Alignment:
| Q |
191 |
ttgtaggtgttgagggatggaaaatggactgaacaagaggcggcaattttggtgccaggagatttagtgagcataaagctgggagatattgtcccagctg |
290 |
Q |
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| T |
21982895 |
ttgtaggtgttgagggatggaaaatggagtgagcaagaggcagaaattttggtgccgggagatgtgatcagtatcaagttgggagacattgtcccagctg |
21982796 |
T |
|
| Q |
291 |
atgctcgcctcttggaaggagatgcccttaagattgaccaatctgcactcactggtgagtcacttccagttaccaagaaccctggtgaggaagtcttctc |
390 |
Q |
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|||| || || |||||||||||| || | ||||||||||| ||||| || ||||||||||| | ||||| || | |||||||||| | || |||||||| |
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| T |
21982795 |
atgcccgtcttttggaaggagatcccttaaagattgaccagtctgcccttactggtgagtccttgccagtaacaaggaaccctggtcaagaggtcttctc |
21982696 |
T |
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| Q |
391 |
tg |
392 |
Q |
| |
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|| |
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| T |
21982695 |
tg |
21982694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 392
Target Start/End: Complemental strand, 45199792 - 45199601
Alignment:
| Q |
201 |
tgagggatggaaaatggactgaacaagaggcggcaattttggtgccaggagatttagtgagcataaagctgggagatattgtcccagctgatgctcgcct |
300 |
Q |
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|||| ||||||| |||||||| |||||||| || || ||||| ||||||||| || | ||||| || | ||||| || || ||||| || ||||| || |
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| T |
45199792 |
tgagagatggaaggtggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtct |
45199693 |
T |
|
| Q |
301 |
cttggaaggagatgcccttaagattgaccaatctgcactcactggtgagtcacttccagttaccaagaaccctggtgaggaagtcttctctg |
392 |
Q |
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| T |
45199692 |
tttggacggagatcctcttaagattgatcaatctgcactcactggtgagtccttgccaacaaccaagaaccctggtgatgaagtcttctctg |
45199601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 1498907 - 1498827
Alignment:
| Q |
214 |
atggactgaacaagaggcggcaattttggtgccaggagatttagtgagcataaagctgggagatattgtcccagctgatgc |
294 |
Q |
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| T |
1498907 |
atggagtgaacaagatgctgcaattttagtaccaggagacataatcagcatcaagttaggagatattgttccagctgatgc |
1498827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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