View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_low_3 (Length: 799)

Name: NF0913_low_3
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_low_3
NF0913_low_3
[»] chr3 (13 HSPs)
chr3 (30-790)||(24646035-24646795)
chr3 (646-787)||(24633181-24633322)
chr3 (34-126)||(24637764-24637856)
chr3 (197-274)||(24633929-24634004)
chr3 (290-374)||(24684200-24684284)
chr3 (290-374)||(24655967-24656051)
chr3 (57-126)||(24716394-24716463)
chr3 (315-371)||(18158148-18158204)
chr3 (644-703)||(24658983-24659042)
chr3 (197-230)||(24703831-24703864)
chr3 (33-121)||(24639724-24639812)
chr3 (33-93)||(24713235-24713294)
chr3 (555-592)||(24671775-24671812)
[»] chr7 (1 HSPs)
chr7 (315-371)||(22014230-22014286)
[»] chr5 (1 HSPs)
chr5 (315-371)||(15282536-15282592)
[»] chr2 (1 HSPs)
chr2 (315-371)||(24224034-24224090)


Alignment Details
Target: chr3 (Bit Score: 709; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 709; E-Value: 0
Query Start/End: Original strand, 30 - 790
Target Start/End: Complemental strand, 24646795 - 24646035
Alignment:
Q  30 ggtttttaggatgaagccaagtaattggctcatgtttaaagatctttccttctgtaaagataaacctgtctctctctgctgctgagaactttaggctatt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646795 ggtttttaggatgaagccaagtaattggctcatgtttaaagatctttccttctgtaaagataaacctgtctctctctgctgctgagaactttaggctatt 24646696  T
Q  130 taacggtttaacggtttacgtgagtagtgagaaaataggctatttaacggnnnnnnnnnnnnnnnnatatgaagttagttagtggttgcaatcaatgtat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||    
T  24646695 taacggtttaacggtttacgtgagtagtgagaaaataggctatttaacggttttttttttttttttatatgaagttagttagtggttgcaatcaatgtat 24646596  T
Q  230 atacgtctttttgcatattctgtcattcttctgatatattgaataatatgattctgttatattactttctctaaacatgtattgcaattctgttttgttt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646595 atacgtctttttgcatattctgtcattcttctgatatattgaataatatgattctgttatattactttctctaaacatgtattgcaattctgttttgttt 24646496  T
Q  330 tccttattaattgaccagaattctgtttatgtttcaacagtttatatatggaaaattgtctggttatctttatttttattttagagtttgagtgagccta 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646495 tccttattaattgaccagaattctgtttatgtttcaacagtttatatatggaaaattgtctggttatctttatttttattttagagtttgagtgagccta 24646396  T
Q  430 acctgtagtagagtgatataatataatgatgaattgtatataccagatcacatccactgcaagattctcaaacaattactaatttatgatcattgtgatt 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646395 acctgtagtagagtgatataatataatgatgaattgtatataccagatcacatccactgcaagattctcaaacaattactaatttatgatcattgtgatt 24646296  T
Q  530 ttttgttgctagtcttatagtttgggaatttattgggaagacgatgaagttgatcacagatgatccatgtttaatatatccccttcctatgcaagaacac 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646295 ttttgttgctagtcttatagtttgggaatttattgggaagacgatgaagttgatcacagatgatccatgtttaatatatccccttcctatgcaagaacac 24646196  T
Q  630 aatttgcaaattttaagtttcaaagccacttgaataagttaggttgtcattagtgttcatttaaactgttttttgaaacgcatcctttctacaaagcatg 729  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646195 aatttgcaaattttaagtttcaaagccacttgaatgagttaggttgtcattagtgttcatttaaactgttttttgaaacgcatcctttctacaaagcatg 24646096  T
Q  730 tgtcaattgaccatgctttggtggagcagactaatatgtgatggttgagtttgagtattat 790  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24646095 tgtcaattgaccatgctttggtggagcagactaatatgtgatggttgagtttgagtattat 24646035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 646 - 787
Target Start/End: Complemental strand, 24633322 - 24633181
Alignment:
Q  646 gtttcaaagccacttgaataagttaggttgtcattagtgttcatttaaactgttttttgaaacgcatcctttctacaaagcatgtgtcaattgaccatgc 745  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| |||| |    
T  24633322 gtttcagagccacttgaataagttaggttgtcatttgtgttcatttaaactgttttttgaaacacatcctttctactaagcatatgtcaattggccatac 24633223  T
Q  746 tttggtggagcagactaatatgtgatggttgagtttgagtat 787  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  24633222 tttggtggagcagaataatatgtgatgcttgagtttgagtat 24633181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 24637856 - 24637764
Alignment:
Q  34 tttaggatgaagccaagtaattggctcatgtttaaagatctttccttctgtaaagataaacctgtctctctctgctgctgagaactttaggct 126  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  24637856 tttaggatgaagccaagtaattggctcatgtttaaaaatctttccttctgtaaagataaaactgtctctctctactgctgagaactttaggct 24637764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 24634004 - 24633929
Alignment:
Q  197 tatgaagttagttagtggttgcaatcaatgtatatacgtctttttgcatattctgtcattcttctgatatattgaata 274  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  24634004 tatgaagttagttagtggttgcaatcaatgtata--cgtctttttgcatattctgtcattcctctgatatattgaata 24633929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 24684284 - 24684200
Alignment:
Q  290 attactttctctaaacatgtattgcaattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtttat 374  Q
    |||||||||||||| ||||||  ||||||||| ||||||||||||||||||||| |||||| |||| |||||||||| |||||||    
T  24684284 attactttctctaagcatgtaaagcaattctgctttgttttccttattaattgagcagaatgctgtgtatgtttcaatagtttat 24684200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 24656051 - 24655967
Alignment:
Q  290 attactttctctaaacatgtattgcaattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtttat 374  Q
    |||||||||| ||| ||||||  ||||||||| ||||||||||||||||||||| |||||   ||| |||||||||| |||||||    
T  24656051 attactttctttaagcatgtaaagcaattctgctttgttttccttattaattgagcagaacgatgtgtatgtttcaatagtttat 24655967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 24716463 - 24716394
Alignment:
Q  57 gctcatgtttaaagatctttccttctgtaaagataaacctgtctctctctgctgctgagaactttaggct 126  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||| ||   |||||| |||||||||||    
T  24716463 gctcatgtttaaagatttttccttctataaagataaacctatctctttcaagtgctgaaaactttaggct 24716394  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 18158148 - 18158204
Alignment:
Q  315 aattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtt 371  Q
    ||||||||||||||||||||||||||||| ||||||  ||| |||||||||| ||||    
T  18158148 aattctgttttgttttccttattaattgagcagaataatgtatatgtttcaatagtt 18158204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 644 - 703
Target Start/End: Complemental strand, 24659042 - 24658983
Alignment:
Q  644 aagtttcaaagccacttgaataagttaggttgtcattagtgttcatttaaactgtttttt 703  Q
    ||||| ||||||||||||  | | ||||||||||||||||||||| ||||||||||||||    
T  24659042 aagttccaaagccacttgtcttaattaggttgtcattagtgttcaattaaactgtttttt 24658983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 24703864 - 24703831
Alignment:
Q  197 tatgaagttagttagtggttgcaatcaatgtata 230  Q
    ||||||||||||||||||||||||||||||||||    
T  24703864 tatgaagttagttagtggttgcaatcaatgtata 24703831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 24639812 - 24639724
Alignment:
Q  33 ttttaggatgaagccaagtaattggctcatgtttaaagatctttccttctgtaaagataaacctgtctctctctgctgctgagaacttt 121  Q
    ||||| |||||||| || |||||| |||||||| | |||||||||||||| | |||||||||  ||  || ||| ||||||||||||||    
T  24639812 ttttacgatgaagctaaataattgtctcatgttcatagatctttccttctatcaagataaacacgttactttctactgctgagaacttt 24639724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 24713294 - 24713235
Alignment:
Q  33 ttttaggatgaagccaagtaattggctcatgtttaaagatctttccttctgtaaagataaa 93  Q
    |||||||||||||| ||||||||| ||||| |||| |||||||||||||| ||| ||||||    
T  24713294 ttttaggatgaagctaagtaattgcctcat-tttatagatctttccttctataatgataaa 24713235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 592
Target Start/End: Complemental strand, 24671812 - 24671775
Alignment:
Q  555 gaatttattgggaagacgatgaagttgatcacagatga 592  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  24671812 gaatttattgggaagaggatggagttgatcacagatga 24671775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 22014230 - 22014286
Alignment:
Q  315 aattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtt 371  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||||||||| ||||    
T  22014230 aattctgttttgttttccttattaattgagcagaatactgtatatgtttcaatagtt 22014286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 15282536 - 15282592
Alignment:
Q  315 aattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtt 371  Q
    ||||||||||||||||||||||||||||| ||||||  ||| |||||||||| ||||    
T  15282536 aattctgttttgttttccttattaattgagcagaataatgtatatgtttcaatagtt 15282592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 24224034 - 24224090
Alignment:
Q  315 aattctgttttgttttccttattaattgaccagaattctgtttatgtttcaacagtt 371  Q
    ||||||||||||||||||||||||||||| ||||||  ||| |||||||||| ||||    
T  24224034 aattctgttttgttttccttattaattgagcagaataatgtatatgtttcaatagtt 24224090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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