View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_31 (Length: 368)
Name: NF0913_low_31
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 2361749 - 2362009
Alignment:
| Q |
13 |
aatattttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagtt |
112 |
Q |
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| T |
2361749 |
aatattttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagtt |
2361848 |
T |
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| Q |
113 |
aaagcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgaggaagaagcg |
212 |
Q |
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| T |
2361849 |
aaagcaatggtttactcaattaagtttcaacattgttcttccagtgctggttgggaaacgatattttggtgctacgaatgtggcgaacgaggaagaagcg |
2361948 |
T |
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| Q |
213 |
caaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggag |
273 |
Q |
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| T |
2361949 |
caaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggag |
2362009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 2366356 - 2366616
Alignment:
| Q |
16 |
attttcatacctcagaagttcaggcgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaa |
115 |
Q |
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| T |
2366356 |
attttcatatcttagaagtgcaacggtggattaaagagctcttcgatgtttggtttagtaaaaagaatgagtcatcaaactacgtgttggtggagatgaa |
2366455 |
T |
|
| Q |
116 |
gcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtg---ctacgaatgcggcgaacgaggaagaagcg |
212 |
Q |
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| T |
2366456 |
gcaatggttaactcaattgagtttcaatattgttcttccaatgctggttgggaaacaatattttggtcatcctacgaatgtgatcaacgaggaagaaggg |
2366555 |
T |
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| Q |
213 |
caaagatgtataaaagctttacaagagttgatgcgattgttaggggtgttcacaataggag |
273 |
Q |
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| T |
2366556 |
caaagatgtgtaaaagctttaaaaaagttgatgcatttgttaggggtgttcacaataggag |
2366616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 2306125 - 2306220
Alignment:
| Q |
87 |
tcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggt |
182 |
Q |
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| T |
2306125 |
tcatcaaactacgtgttagtagagttggatcaatggtttacacatttaacattcaacatggttcttcgaatggttgttgggaaaagatattttggt |
2306220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 2356163 - 2356239
Alignment:
| Q |
116 |
gcaatggtttactcaattaagtttcaacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatg |
192 |
Q |
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| T |
2356163 |
gcaatggtttattgagttgaatttcaacattgtacttccgatgattgttgggaagcgatattttggtgctatgaatg |
2356239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 2349447 - 2349492
Alignment:
| Q |
45 |
attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcat |
90 |
Q |
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| T |
2349447 |
attaaagagctcttcgatgtttggtatagcaaaaagaaagagtcat |
2349492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 45 - 265
Target Start/End: Original strand, 41341688 - 41341908
Alignment:
| Q |
45 |
attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaaca |
144 |
Q |
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||||||||| ||| ||||||||||| ||||| | ||||| ||||||||||||| | ||||||||| || || ||||| ||||||||||| ||| |||| |
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| T |
41341688 |
attaaagaggtctacaatgtttggtgtagtagagagaacaagtcatcaaactatgtgttggtggacttgaaacaatgttttactcaattgagtaaaaaca |
41341787 |
T |
|
| Q |
145 |
ttgttcttccaatgctggttgggaaacgatattttggtgctacgaatgcggcgaacgaggaagaagcgcaaagatgtataaaagctttacaagagttgat |
244 |
Q |
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|||||||||||||| |||||||||| ||||||||||| |||||||||| || || ||||||||| |||| |||||| |||||||| ||||| || | |
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| T |
41341788 |
ttgttcttccaatgttggttgggaagcgatattttggagctacgaatgtggttgacaaggaagaagaacaaaaatgtatgaaagctttggaagagatgtt |
41341887 |
T |
|
| Q |
245 |
gcgattgttaggggtgttcac |
265 |
Q |
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| T |
41341888 |
acgtttgttaggggtgttcac |
41341908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 4303542 - 4303693
Alignment:
| Q |
44 |
gattaaagagctcttcaatgtttggtttagtaaa---aagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttc |
140 |
Q |
| |
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|||||||||||||| ||||||||||| | ||||| || |||||||||||||| || | |||||||| | |||||||||||||||||||| | | | |
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| T |
4303542 |
gattaaagagctctacaatgtttggtgtcgtaaagagaacaacgagtcatcaaaatatttgatggtggaggtcaagcaatggtttactcaattgaatata |
4303641 |
T |
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| Q |
141 |
aacattgttcttccaatgctggttgggaaacgatattttggtgctacgaatg |
192 |
Q |
| |
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|| | ||||||||| || ||||||| || |||||||| ||| |||| |||| |
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| T |
4303642 |
gacttggttcttccattgttggttggaaagcgatatttcggttctacaaatg |
4303693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 5805897 - 5805808
Alignment:
| Q |
44 |
gattaaagagctcttcaatgtttggtttagtaaaaagaacgagt------catcaaactacgcgttggtggagttaaagcaatggtttac |
127 |
Q |
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||||||||||||||||||| |||||| ||| ||||||||||| | |||||||||| | ||||||||| || |||||||||||||| |
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| T |
5805897 |
gattaaagagctcttcaatatttggtctagaaaaaagaacgaatcaaatccatcaaactatgtgttggtggacttgaagcaatggtttac |
5805808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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