View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_low_37 (Length: 348)

Name: NF0913_low_37
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_low_37
NF0913_low_37
[»] chr8 (12 HSPs)
chr8 (1-254)||(31909063-31909315)
chr8 (34-211)||(3479030-3479206)
chr8 (35-205)||(3785802-3785972)
chr8 (35-211)||(19472489-19472664)
chr8 (35-211)||(19543414-19543589)
chr8 (35-211)||(19589107-19589282)
chr8 (71-211)||(3788506-3788646)
chr8 (80-217)||(35416089-35416228)
chr8 (85-211)||(12062802-12062931)
chr8 (82-211)||(369296-369425)
chr8 (71-119)||(4678097-4678146)
chr8 (71-119)||(4676152-4676201)
[»] chr7 (8 HSPs)
chr7 (35-211)||(2576966-2577142)
chr7 (34-210)||(18446569-18446735)
chr7 (35-127)||(26389160-26389252)
chr7 (83-211)||(1773530-1773661)
chr7 (88-173)||(1715747-1715832)
chr7 (136-194)||(9457682-9457739)
chr7 (147-211)||(26389252-26389317)
chr7 (35-80)||(1773696-1773741)
[»] chr1 (5 HSPs)
chr1 (42-211)||(16385556-16385725)
chr1 (71-191)||(20225517-20225639)
chr1 (32-211)||(27356025-27356205)
chr1 (108-217)||(20226820-20226932)
chr1 (35-211)||(12685086-12685250)
[»] chr6 (5 HSPs)
chr6 (36-217)||(21146819-21147003)
chr6 (80-210)||(9664639-9664771)
chr6 (35-211)||(33638784-33638960)
chr6 (71-217)||(787289-787437)
chr6 (71-218)||(3074931-3075083)
[»] chr5 (5 HSPs)
chr5 (35-211)||(4215219-4215395)
chr5 (34-211)||(18587369-18587554)
chr5 (67-188)||(27172855-27172977)
chr5 (94-211)||(37498209-37498327)
chr5 (71-119)||(39040636-39040685)
[»] chr2 (2 HSPs)
chr2 (71-218)||(26608007-26608155)
chr2 (35-220)||(20509104-20509288)
[»] scaffold0016 (1 HSPs)
scaffold0016 (35-211)||(48375-48554)
[»] chr3 (9 HSPs)
chr3 (71-217)||(20868697-20868847)
chr3 (82-217)||(27462140-27462277)
chr3 (71-219)||(24595227-24595377)
chr3 (72-218)||(447069-447217)
chr3 (71-217)||(20871335-20871490)
chr3 (81-211)||(51308823-51308955)
chr3 (71-129)||(35610819-35610878)
chr3 (136-211)||(51306418-51306493)
chr3 (163-217)||(27462290-27462344)
[»] chr4 (3 HSPs)
chr4 (71-217)||(55849419-55849568)
chr4 (35-203)||(46432428-46432596)
chr4 (80-169)||(55852053-55852144)
[»] scaffold0889 (1 HSPs)
scaffold0889 (155-202)||(3292-3339)
[»] scaffold0870 (1 HSPs)
scaffold0870 (155-202)||(3496-3543)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 31909315 - 31909063
Alignment:
Q  1 actgtgataaatcctgattcattttaatgaatcatgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataa 100  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31909315 actgtgataaatcatgattcattctaatgaatcatgttgaaatatagatagtaatactcattttagagtaagttaaggtactagtttagtcactatataa 31909216  T
Q  101 gtcacaagttgactcatttgtacctctctctttcattttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctattttcatgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31909215 gtcacaagttgactcatttgtacctctctctttcattttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctattttcatgga 31909116  T
Q  201 tgccatgtttcctaacaaatcactgtctaaacacagtgtaggtgtagctgacca 254  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31909115 tg-catgtttcctaacaaatcactgtctaaacacagtgtaggtgtagctgacca 31909063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 3479030 - 3479206
Alignment:
Q  34 atgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 133  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||||  | ||||||    
T  3479030 atgttgaaatatagatagttatactcattttagagttagttagggtattagtttagtccctacataagtcacaagttgactcatttgtac--cgctcttt 3479127  T
Q  134 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttc 211  Q
    || | ||| |||||||||||||| ||||||||| ||  ||| |||| |||| |||||||||||||||||| ||||||||    
T  3479128 cactgttgcatcttttcaactattatcaatacagtaattttttaagtttttttctctattttcatggatgtcatgtttc 3479206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 3785972 - 3785802
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 134  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||  || || |||     
T  3785972 tgttgaaatatagatagtgatactcattttagagttagttagggtactactatagtcactatataagtcacaagttgactcatttgta--tcactttttt 3785875  T
Q  135 att-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt-ttctctctattttcatggatgcca 205  Q
    ||| ||||||| |||||||||| ||||||||||||  ||  ||||||| ||||||||||||||||||||||||    
T  3785874 attcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctctattttcatggatgcca 3785802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 19472664 - 19472489
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagtta-gggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 133  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||| ||||||     ||||||    
T  19472664 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta----actcttt 19472569  T
Q  134 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 211  Q
    || ||||||||| ||||||||||  |||||| ||||  ||  ||||| ||||||||||||||||||||||||||||||||    
T  19472568 cacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttc 19472489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 19543589 - 19543414
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagtta-gggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 133  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||| ||||||     ||||||    
T  19543589 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta----actcttt 19543494  T
Q  134 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 211  Q
    || ||||||||| ||||||||||  |||||| ||||  ||  ||||| ||||||||||||||||||||||||||||||||    
T  19543493 cacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttc 19543414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 19589107 - 19589282
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagtt-agggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 133  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||| ||||||     ||||||    
T  19589107 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta----actcttt 19589202  T
Q  134 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 211  Q
    || ||||||||| ||||||||||  |||||| ||||  ||  ||||| ||||||||||||||||||||||||||||||||    
T  19589203 cacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttc 19589282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 3788646 - 3788506
Alignment:
Q  71 agttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatag 169  Q
    ||||||||||||||| |||||||| |||||||||||||||||| ||||||||  || || ||||||| ||||||| |||||||||| ||||||||||||     
T  3788646 agttagggtactagtatagtcactgtataagtcacaagttgacccatttgta--tcactttttcattcttgtatcatttcaactattatcaatacaataa 3788549  T
Q  170 ctttgtaagctt-ttctctctattttcatggatgccatgtttc 211  Q
     ||| ||| ||| ||||||||||||||||||||||||||||||    
T  3788548 ttttctaaacttcttctctctattttcatggatgccatgtttc 3788506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 35416228 - 35416089
Alignment:
Q  80 actagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaa 177  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||| | |||  |||||| ||||||| ||||||||| ||| |||||||||| |||  ||    
T  35416228 actagtttagtgactatataagtcacatggttgactcatttgtacttatcttcttcattattgtatcatttcaactaccattaatacaatagtttttcaa 35416129  T
Q  178 gcttttctctctattttcatggatgccatgtttcctaaca 217  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  35416128 gcttttctctctatttttatggatgccatgtttcttaaca 35416089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 12062802 - 12062931
Alignment:
Q  85 tttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaatagctttgtaagctt 181  Q
    |||||| ||||||||||||||| | ||||||||||||||||    ||||||||| ||||||  |||||||| |||||||| | ||||| ||| |||||||    
T  12062802 tttagttactatataagtcacatggttgactcatttgtacccacatctttcattcttgtattattttcaaccatcatcaagagaatagttttctaagctt 12062901  T
Q  182 ttctctctattttcatggatgccatgtttc 211  Q
    ||||||||||||||||||||||||||||||    
T  12062902 ttctctctattttcatggatgccatgtttc 12062931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 369296 - 369425
Alignment:
Q  82 tagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatttt-gtatcttttcaactatcatcaatacaatagctttgtaagc 179  Q
    ||||||||| |||| |||||||| | | ||| || |||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||  |||||||     
T  369296 tagtttagttactaaataagtcatatggttggctaatttgtaccgatctcttttatttttgtatcttttcaactatcatcaatacaatag--ttgtaagt 369393  T
Q  180 ttttctctctattttcatggatgccatgtttc 211  Q
    |||||||| |||||||||||||| ||||||||    
T  369394 ttttctctttattttcatggatgtcatgtttc 369425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 4678097 - 4678146
Alignment:
Q  71 agttagggtactagtttagtcactatataagtcacaa-gttgactcattt 119  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  4678097 agttagagtactagtttagttactatataagtcacaaggttgactcattt 4678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 4676152 - 4676201
Alignment:
Q  71 agttagggtactagtttagtcactatataagtcaca-agttgactcattt 119  Q
    |||||| ||||||||||||| |||||||||||||||  ||||||||||||    
T  4676152 agttagagtactagtttagttactatataagtcacagggttgactcattt 4676201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 2576966 - 2577142
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 134  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  || || ||||    
T  2576966 tgttgaaatatagatagtgatactcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgta--tcactttttc 2577063  T
Q  135 att-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt-ttctctctattttcatggatgccatgtttc 211  Q
    ||| ||||||| |||||||||| ||||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||    
T  2577064 attcttgtatcatttcaactattatcaatacaataattttctaagcttcttctctctattttcatggatgccatgtttc 2577142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 18446569 - 18446735
Alignment:
Q  34 atgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 133  Q
    |||||||||||||| |||| |||||||||||||||| |||||| | ||||||| |||||||||||||||||| |||||| || ||||||  ||| |||||    
T  18446569 atgttgaaatatagttagttatactcattttagagttagttagtgcactagttcagtcactatataagtcactagttgattc-tttgta--tctttcttt 18446665  T
Q  134 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgttt 210  Q
    || ||||||||| |||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||    
T  18446666 cacttttgtatcatttcaactattatcaatacaatagct--------ttttctctctattttcatggatgccatgttt 18446735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 26389160 - 26389252
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctct 127  Q
    ||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  26389160 tgttgaaatataggtagttatactcattttagagttagttagtgtactagtttagtcactatataagtcacaagttgactcttttgtatctct 26389252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 83 - 211
Target Start/End: Complemental strand, 1773661 - 1773530
Alignment:
Q  83 agtttagtcactatataagtcaca-agttgactcatttgtacctctctctttcattt-tgtatcttttcaactatcatcaatacaatagctttgtaagct 180  Q
    |||||||||||||||| ||||||| |||||||||||||||| |||| || ||  | | | |||| |||| ||||| |||||||||||| |||||||||||    
T  1773661 agtttagtcactatattagtcacagagttgactcatttgtatctctttcatttttgtatatatcatttctactattatcaatacaataactttgtaagct 1773562  T
Q  181 ttt-ctctctattttcatggatgccatgtttc 211  Q
    ||| ||||||||||| ||||||| ||||||||    
T  1773561 tttactctctatttttatggatgtcatgtttc 1773530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 1715832 - 1715747
Alignment:
Q  88 agtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagcttt 173  Q
    ||||||||||||||| || ||||||||| |||||| |||||| ||||| |||| |||| |||||||||| |||||||||||| ||||    
T  1715832 agtcactatataagttactagttgactcttttgtatctctct-tttcacttttatatcatttcaactattatcaatacaataacttt 1715747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 9457682 - 9457739
Alignment:
Q  136 ttttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctatttt 194  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  9457682 ttttgtatcattttaactatcatcaatacaatagctttgtaag-ttttttctctatttt 9457739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 26389252 - 26389317
Alignment:
Q  147 ttcaactatcatcaatacaatagctttgtaagctttt-ctctctattttcatggatgccatgtttc 211  Q
    ||||||||| ||||||||||||  ||| |||| |||| ||||||||||||||||||||||||||||    
T  26389252 ttcaactattatcaatacaataattttctaagttttttctctctattttcatggatgccatgtttc 26389317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 1773741 - 1773696
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagttagggta 80  Q
    ||||||| ||||| |||| |||||||||||||||| ||||||||||    
T  1773741 tgttgaattataggtagttatactcattttagagttagttagggta 1773696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 16385556 - 16385725
Alignment:
Q  42 atatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttg 140  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||| |||||    
T  16385556 atatagatagttatactcattttagagttagttagggtactagtttagtcactgtataagtcacaagttgactcatttgtac--atctctttcatttttg 16385653  T
Q  141 tatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 211  Q
    |||| |||   |||| |||||||||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  16385654 tatcattttccctataatcaatacaataactttgtaagctttttctttctattttcatggatgccatgtttc 16385725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 20225639 - 20225517
Alignment:
Q  71 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaata 168  Q
    |||||||  ||||||||||| ||||||||||||||| | ||||||| ||||||||| ||| || |||| ||||||| |||||| ||||||||||||||||    
T  20225639 agttaggacactagtttagttactatataagtcacatggttgactcttttgtacctatcttttccattcttgtatcatttcaattatcatcaatacaata 20225540  T
Q  169 gctttgtaagcttttctctctat 191  Q
    | |||| ||||||||||||||||    
T  20225539 gttttgcaagcttttctctctat 20225517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 27356205 - 27356025
Alignment:
Q  32 tcatgttgaaatatagatagtaatactcatttt-agagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctc 130  Q
    ||||||| |||||||| |||| ||| ||||||| || || |||||| |||||| |||||||||| |||||| || ||||||| | || ||||  ||||||    
T  27356205 tcatgttaaaatataggtagttatagtcatttttagtgttagttagtgtactaatttagtcactgtataagacataagttgaattatatgta--tctctc 27356108  T
Q  131 tttcatttt-gtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 211  Q
    ||||||||| ||||| |||  |||||||||||||||||| | || ||||  |||||||||| ||||||||| | |||||||||    
T  27356107 tttcatttttgtatcattttcactatcatcaatacaataaccttttaagttttttctctcttttttcatgggtaccatgtttc 27356025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 20226932 - 20226820
Alignment:
Q  108 gttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagcttttct--ctctattttcatggatgcc 204  Q
    |||||||| ||||||||| ||| ||||||| ||||||| |||||| ||||||||||||||||| |||  || |||||||  |||||| | |||| |||||    
T  20226932 gttgactcttttgtacctatctttttcattcttgtatcatttcaattatcatcaatacaatagtttttcaaacttttctctctctatatccatgaatgcc 20226833  T
Q  205 atgtttcctaaca 217  Q
     ||||||||||||    
T  20226832 gtgtttcctaaca 20226820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 12685086 - 12685250
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 134  Q
    ||||||||||||| |||| |||||||||||||||| |||||| |||| |||| |||||||            ||||||||| ||||||  |||||||||     
T  12685086 tgttgaaatatagttagttatactcattttagagttagttagtgtacgagttcagtcact------------agttgactcttttgta--tctctcttta 12685171  T
Q  135 a-ttttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 211  Q
    | |||| |||| |||  ||||| ||||||| |||| |||| |||| |||| ||||||||||| ||||||||||||||||    
T  12685172 acttttatatcattttcactattatcaatataataactttctaagcctttcctctctatttttatggatgccatgtttc 12685250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 21147003 - 21146819
Alignment:
Q  36 gttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcact--atataagtcacaagttgactcatttgtacctctctcttt 133  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| |   ||||||||||| |||||||||||||||||||||| |||    
T  21147003 gttgaaatatagatagttatactcattttaaagttagttagggtactagttttgtcaatgactataagtcacatgttgactcatttgtacctctct-ttt 21146905  T
Q  134 catt-ttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttcctaaca 217  Q
    |||| ||||||| ||||||||||  |||||||||||  ||| ||||  ||||||||||||||||||||||| |||||||| |||||    
T  21146904 cattcttgtatcatttcaactattttcaatacaataattttctaagttttttctctctattttcatggatgacatgtttcttaaca 21146819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 9664771 - 9664639
Alignment:
Q  80 actagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaa 177  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||| ||| ||||||| ||||||| |||||||||| ||||||||||||| |||  ||    
T  9664771 actagtttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagtttttcaa 9664672  T
Q  178 gcttttctctctattttcatggatgccatgttt 210  Q
    |||||||||||||| | ||||||||||||||||    
T  9664671 gcttttctctctatatccatggatgccatgttt 9664639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 33638960 - 33638784
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 134  Q
    |||||||||||||  ||| ||||| |||||||||| |||||| ||| ||||||| ||  ||||||||||| |||||||||| |||||| |||||| ||      
T  33638960 tgttgaaatatagg-agttatacttattttagagttagttagtgtattagtttaatcgttatataagtcataagttgactcttttgtatctctcttttaa 33638862  T
Q  135 attttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 211  Q
     |||||||||| ||||| ||| ||||| ||||||  |||  |||  ||||||||||||||||||||||||||||||||    
T  33638861 cttttgtatctcttcaattattatcaagacaataattttcaaagttttttctctctattttcatggatgccatgtttc 33638784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 787289 - 787437
Alignment:
Q  71 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaata 168  Q
    |||||||  ||||||||||| ||||||||||||| | | ||||||||||||||||  ||| | ||||| ||||||| |||||| ||||||||||||||||    
T  787289 agttaggacactagtttagttactatataagtcatatgattgactcatttgtaccgatctttctcattcttgtatcatttcaagtatcatcaatacaata 787388  T
Q  169 gctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 217  Q
    | |||  || ||||||||||||| |  ||||||| ||||||||||||||    
T  787389 gttttccaaacttttctctctatatctatggatgacatgtttcctaaca 787437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 218
Target Start/End: Original strand, 3074931 - 3075083
Alignment:
Q  71 agttagggtactagtttagtcactatata--agtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaa-taca 165  Q
    |||||||  ||||||||||| ||||||||  | ||||| | ||| |||||||||| || ||| || |||| || |||| |||||||||||||||| ||||    
T  3074931 agttaggacactagtttagttactatatataaatcacatggttgtctcatttgtatctatcttttccattcttatatcatttcaactatcatcaaataca 3075030  T
Q  166 atagctttgtaagcttttctctctattttcatggatgccatgtttcctaacaa 218  Q
    |||| |||  |||||||||||||||| | |||||||||||||||| |||||||    
T  3075031 atagttttccaagcttttctctctatatccatggatgccatgttttctaacaa 3075083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 4215219 - 4215395
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 134  Q
    ||||||||||||| |||| |||||||||| ||||| |||||| | ||||||| |||||||||||||||||  ||||||||| |||||| |||||| ||||    
T  4215219 tgttgaaatatagttagttatactcattt-agagttagttagtgcactagttgagtcactatataagtcattagttgactcttttgtatctctct-tttc 4215316  T
Q  135 a-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 211  Q
    | |||| |||| |||||||||| |||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||    
T  4215317 acttttatatcatttcaactattatcaatacaataactttctaagctttttctctccattttcatggatgccatgtttc 4215395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 18587554 - 18587369
Alignment:
Q  34 atgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaa-gttgactcatttgtac---ctct-- 127  Q
    |||||||||||||| |||| ||||| |||||||||| ||||||||||||||||  || |||||||||||||||| ||||| ||||||||||   ||||      
T  18587554 atgttgaaatataggtagttatacttattttagagttagttagggtactagttaggttactatataagtcacaaggttgattcatttgtaccgactcttt 18587455  T
Q  128 -ctctttcat-tttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 211  Q
      |||||||| |||||||| ||| |||||||||||||| || |  ||| ||||  |||||||||||||| |||||||||||||||||    
T  18587454 catctttcatctttgtatcattttaactatcatcaatataa-atttttctaagttttttctctctatttccatggatgccatgtttc 18587369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 67 - 188
Target Start/End: Complemental strand, 27172977 - 27172855
Alignment:
Q  67 agtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaataca 165  Q
    ||||||||||| |||||||||||| |||||||||||||  || ||||||||||||| || ||| || |||| ||||||| |||||||||||||||||| |    
T  27172977 agtaagttaggatactagtttagttactatataagtcattaggtgactcatttgtaactatcttttccattcttgtatcatttcaactatcatcaataga 27172878  T
Q  166 atagctttgtaagcttttctctc 188  Q
    |||| |||  |||||||||||||    
T  27172877 atagttttccaagcttttctctc 27172855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 37498327 - 37498209
Alignment:
Q  94 tatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctat 191  Q
    ||||||||||||||||||||||||||||||| || ||||| | |||| |||| |||||||||||||||||||||||   || ||||  ||||||||| ||    
T  37498327 tatataagtcacaagttgactcatttgtacccct-tcttttacttttatatcatttcaactatcatcaatacaataatcttctaagttttttctctccat 37498229  T
Q  192 tttcatggatgccatgtttc 211  Q
    ||||||||||||||| ||||    
T  37498228 tttcatggatgccatatttc 37498209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 39040685 - 39040636
Alignment:
Q  71 agttagggtactagtttagtcactatataagtcacaa-gttgactcattt 119  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  39040685 agttagagtactagtttagttactatataagtcacaaggttgactcattt 39040636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 26608155 - 26608007
Alignment:
Q  71 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaat 167  Q
    ||||||| |||||||| ||| ||||||||||||||||| ||||||||| ||||||| ||| ||||||| ||||||| |||||||||||||||||||||||    
T  26608155 agttaggatactagttcagttactatataagtcacaaggttgactcatctgtacctatctttttcattcttgtatcattttcaactatcatcaatacaat 26608056  T
Q  168 agctttgtaagcttttctctctattttcatggatgccatgtttcctaacaa 218  Q
    |  ||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  26608055 a--tttctaagcttttctctctattttcatggatgtcatgtttcttaacaa 26608007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 20509288 - 20509104
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagttaggg-tactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 133  Q
    |||| |||||||  |||| |||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||||| ||  |||||||||    
T  20509288 tgttaaaatataagtagttatactcattttagagttagttaggggtactagtttagtcaatatataagttacaagttgactcatttata--tctctcttt 20509191  T
Q  134 cattttgtatcttttcaactatcatcaatacaatagctttgtaagct-tttctctctattttcatggatgccatgtttcctaacaaat 220  Q
    |||||| | | ||||||||||  ||| ||| ||||  |||  | | | |||||||||||||||||||||| ||||||||  |||||||    
T  20509190 catttt-tgtattttcaactagtatcgatataataattttcgacgttgtttctctctattttcatggatgtcatgtttctcaacaaat 20509104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 48375 - 48554
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagtta-gggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 133  Q
    ||||||||||||| |||| |||||||||||||||| ||||| ||||| |||| || ||||||||||||||||||||||| || |||||| || ||| ||     
T  48375 tgttgaaatataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttc 48474  T
Q  134 cattttgtatcttttcaactatcatcaatacaatagctttgtaagctt--ttctctctattttcatggatgccatgtttc 211  Q
     ||||||||||  |||||| || ||||||||||||  ||| |||||||  ||||||||| ||||||||||| ||||||||    
T  48475 aattttgtatcccttcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttc 48554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 20868697 - 20868847
Alignment:
Q  71 agttagggtactagttt-agtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatctt-ttcaactatcatcaatacaa 166  Q
    ||||||| ||||||||| ||| ||||||||||||||| | |||||| |||||||||| ||| ||||||| ||||||  | ||||||||||||||||||||    
T  20868697 agttaggatactagttttagttactatataagtcacatggttgacttatttgtacctatctttttcattcttgtattatgttcaactatcatcaatacaa 20868796  T
Q  167 tagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 217  Q
    ||| ||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  20868797 tagttttctaagcttttctctctcttttcatggatgccatgtttcccaaca 20868847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 27462140 - 27462277
Alignment:
Q  82 tagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagc 179  Q
    ||||||||| ||||||||||||| | | ||||||||||||||||| ||| ||||||| ||||||| |||||||||| ||||||||||||| |||  ||||    
T  27462140 tagtttagttactatataagtcatatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagttttccaagc 27462239  T
Q  180 ttttctctctattttcatggatgccatgtttcctaaca 217  Q
    |||||||||||| | |||||||||||||||| ||||||    
T  27462240 ttttctctctatatccatggatgccatgtttactaaca 27462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 24595227 - 24595377
Alignment:
Q  71 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaat 167  Q
    |||||||  ||||||||||| ||||||||||||||| | |||||||||||||||   ||| ||||||| ||||||| |||||||||||||||||||||||    
T  24595227 agttaggacactagtttagttactatataagtcacatggttgactcatttgtactaatctttttcattcttgtatcattttcaactatcatcaatacaat 24595326  T
Q  168 agctttgtaagcttttctctctattttcatggatgccatgtttcctaacaaa 219  Q
    || ||| ||||||||||||||||| ||||||||||   ||||||||||||||    
T  24595327 ag-tttctaagcttttctctctatcttcatggatgttgtgtttcctaacaaa 24595377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 447217 - 447069
Alignment:
Q  72 gttagggtactagtttagtcactatataagtcacaa-gttgactcatttgtacctctctctttcattttg-tatcttttcaactatcatcaatacaatag 169  Q
    ||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||  ||||||||  |||| ||||||||| ||| ||||||| ||    
T  447217 gttagggtactagtttagatactatagaagtcacaaagttgactcatttgtacctctct--ttcatttttctatcatttcaactaccataaatacaacag 447120  T
Q  170 ctttgtaagctttt--ctctctattttcatggatgccatgtttcctaacaa 218  Q
    ||||||||| ||||  ||||||| |||||||||| ||||||||| ||||||    
T  447119 ctttgtaagtttttttctctctagtttcatggataccatgtttcttaacaa 447069  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 20871335 - 20871490
Alignment:
Q  71 agttagggtactagttt-agtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaat---- 162  Q
    ||||||| ||||||||| ||| ||||||||||||||| | ||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||||||        
T  20871335 agttaggatactagttttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtattattttcaactatcatcaatacaa 20871434  T
Q  163 -acaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 217  Q
     ||||||| ||| ||||||||||||||| |||||||||||| ||||||||| ||||    
T  20871435 tacaatagttttctaagcttttctctctcttttcatggatgtcatgtttcccaaca 20871490  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 51308823 - 51308955
Alignment:
Q  81 ctagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaag 178  Q
    ||||| |||| ||||||||||||||| | |||||||||||||||   ||||||| ||| ||||||| |||||||||| ||||||||||||  ||| ||||    
T  51308823 ctagtgtagttactatataagtcacatggttgactcatttgtactaatctcttttattcttgtatcatttcaactattatcaatacaataa-tttataag 51308921  T
Q  179 ctttt-ctctctattttcatggatgccatgtttc 211  Q
    ||||| ||||||||||||||||||| ||||||||    
T  51308922 ctttttctctctattttcatggatgtcatgtttc 51308955  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 35610819 - 35610878
Alignment:
Q  71 agttagggtactagtttagtcactatataagtcacaa-gttgactcatttgtacctctct 129  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||    
T  35610819 agttagggtactagtttagttactatataagtcacaaggttgactcatttgtacatctct 35610878  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 51306418 - 51306493
Alignment:
Q  136 ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-ctctctattttcatggatgccatgtttc 211  Q
    ||||||||| ||| |||||| ||||||||||||  ||| ||||||||| ||||||||||||||||||| ||||||||    
T  51306418 ttttgtatcattttaactattatcaatacaataa-tttctaagctttttctctctattttcatggatgtcatgtttc 51306493  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 27462290 - 27462344
Alignment:
Q  163 acaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 217  Q
    ||||||| |||  |||||||||||||||| | |||||||||||||||| ||||||    
T  27462290 acaatagttttccaagcttttctctctatatccatggatgccatgtttactaaca 27462344  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 55849568 - 55849419
Alignment:
Q  71 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaata 168  Q
    |||||||  ||||||| ||| ||||||||||||||| | ||||||||||||||||| ||| || |||| ||||||| |||||||||||||||||||||||    
T  55849568 agttaggacactagttcagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatacaata 55849469  T
Q  169 gctttgt-aagcttttctctctattttcatggatgccatgtttcctaaca 217  Q
    | |||   |||||||||||||||| | |||||||||||||||||||||||    
T  55849468 gttttcccaagcttttctctctatatccatggatgccatgtttcctaaca 55849419  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 46432428 - 46432596
Alignment:
Q  35 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 134  Q
    |||| |||| ||| |||| |||||||||||||||| |||||| | |||| |||||||||  || ||||||| ||||||||| ||| ||  || |||||||    
T  46432428 tgttaaaatgtagttagttatactcattttagagttagttagtgcactaatttagtcaccgtaaaagtcactagttgactcttttata--tccctctttc 46432525  T
Q  135 a-ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-ctctctattttcatggatgc 203  Q
    | ||||||||| |||  ||||| ||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  46432526 acttttgtatcatttttactattatcaatacaataattttgtaagcttttcctctctattttcatggatgc 46432596  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 55852144 - 55852053
Alignment:
Q  80 actagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatag 169  Q
    ||||| ||||| ||||||||| | ||| | ||||||||||||||  | ||| || |||| ||||||| ||||||||||||||||||||||||    
T  55852144 actagattagttactatataactaacatggttgactcatttgtagttatcttttacattcttgtatcatttcaactatcatcaatacaatag 55852053  T

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Target: scaffold0889 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0889
Description:

Target: scaffold0889; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 3339 - 3292
Alignment:
Q  155 tcatcaatacaatagctttgtaagcttttctctctattttcatggatg 202  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  3339 tcatcgatacaatagttttgtaagcttttatctctattttcatggatg 3292  T

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Target: scaffold0870 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0870
Description:

Target: scaffold0870; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 3543 - 3496
Alignment:
Q  155 tcatcaatacaatagctttgtaagcttttctctctattttcatggatg 202  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  3543 tcatcgatacaatagttttgtaagcttttatctctattttcatggatg 3496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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