View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0913_low_38 (Length: 347)
Name: NF0913_low_38
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 31909293 - 31909528
Alignment:
| Q |
3 |
aatgaatcaggatttatcacagtgaatctgatccatcataatggatcgggttttaagatgatattgatgtctaaaatagctacacaccaaagattcacat |
102 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31909293 |
aatgaatcatgatttatcacagtgaatctgatccatcataatggatcgggttttaagatgatattgatgtctaaaatagctacacaccaaagattcacat |
31909392 |
T |
|
| Q |
103 |
caattgagttcagttctgtatcgaaccaagatacaacttgcatgaatgtttagttattgttatccatgattttgggtttaagacttgatttattcaaggg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31909393 |
caattgagttcagttctgtatcgaaccaagatacgacttgcatgaatgtttagttattgctatccatgattttgggtttaagacttgatttattcaaggg |
31909492 |
T |
|
| Q |
203 |
agaacatgtgtaagacttagaatttgaaatgagaat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31909493 |
agaacatgtgtaagacttagaatttgaaatgagaat |
31909528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 30919424 - 30919513
Alignment:
| Q |
57 |
aagatgatattgatgtctaaaatagctacacaccaaagattcacatcaattgagttcagttctgtatcgaaccaagatacaacttgcatg |
146 |
Q |
| |
|
||||||| ||| ||||| || |||| | ||||| |||||||| || ||||||||||||| ||| ||||||| |||||||||| ||||| |
|
|
| T |
30919424 |
aagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcgcatg |
30919513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 888 times since January 2019
Visitors: 6705