View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_low_4 (Length: 732)

Name: NF0913_low_4
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_low_4
NF0913_low_4
[»] chr3 (37 HSPs)
chr3 (43-440)||(2547343-2547739)
chr3 (510-732)||(2547079-2547301)
chr3 (510-732)||(15538971-15539193)
chr3 (515-732)||(10725901-10726117)
chr3 (511-730)||(5347320-5347539)
chr3 (511-732)||(19631923-19632142)
chr3 (511-712)||(13440050-13440250)
chr3 (512-732)||(16218878-16219088)
chr3 (518-732)||(27052373-27052587)
chr3 (510-732)||(10934404-10934626)
chr3 (510-732)||(19614337-19614561)
chr3 (510-644)||(40354386-40354520)
chr3 (511-732)||(19659825-19660035)
chr3 (630-730)||(12696608-12696708)
chr3 (511-730)||(12252769-12252988)
chr3 (334-438)||(19660108-19660212)
chr3 (333-444)||(16219156-16219266)
chr3 (246-438)||(27051345-27051535)
chr3 (511-665)||(30098729-30098883)
chr3 (630-713)||(15045225-15045308)
chr3 (144-216)||(16219934-16220006)
chr3 (334-438)||(19632215-19632315)
chr3 (378-438)||(15538838-15538898)
chr3 (93-182)||(9637244-9637333)
chr3 (93-182)||(17385786-17385875)
chr3 (626-730)||(4813913-4814016)
chr3 (141-212)||(15046261-15046331)
chr3 (150-212)||(11833506-11833568)
chr3 (150-212)||(46472769-46472831)
chr3 (350-431)||(10934245-10934326)
chr3 (70-123)||(25486601-25486654)
chr3 (175-221)||(5346363-5346409)
chr3 (132-222)||(8023289-8023379)
chr3 (132-178)||(19633006-19633052)
chr3 (150-207)||(10933497-10933554)
chr3 (386-435)||(14305661-14305710)
chr3 (141-182)||(38277998-38278039)
[»] chr4 (18 HSPs)
chr4 (511-732)||(15711344-15711565)
chr4 (510-732)||(11776149-11776370)
chr4 (511-730)||(21981882-21982099)
chr4 (510-729)||(17959794-17960010)
chr4 (510-732)||(16571127-16571336)
chr4 (511-665)||(12334697-12334851)
chr4 (511-627)||(9566500-9566616)
chr4 (334-435)||(17959627-17959728)
chr4 (144-220)||(11775304-11775380)
chr4 (132-212)||(16570477-16570557)
chr4 (90-205)||(12451735-12451849)
chr4 (511-710)||(12344096-12344284)
chr4 (362-438)||(11776002-11776078)
chr4 (56-192)||(18420033-18420169)
chr4 (510-610)||(19605865-19605965)
chr4 (142-212)||(28799866-28799936)
chr4 (141-214)||(10115517-10115590)
chr4 (261-329)||(11775914-11775983)
[»] chr7 (33 HSPs)
chr7 (511-732)||(11774001-11774223)
chr7 (511-719)||(29731043-29731256)
chr7 (258-437)||(11774297-11774476)
chr7 (511-719)||(29741691-29741904)
chr7 (566-732)||(8323971-8324140)
chr7 (510-685)||(16094663-16094837)
chr7 (512-682)||(20148544-20148713)
chr7 (244-438)||(23386474-23386668)
chr7 (259-444)||(20421097-20421283)
chr7 (566-732)||(8327170-8327325)
chr7 (510-610)||(23099816-23099915)
chr7 (630-713)||(3170266-3170349)
chr7 (90-216)||(11775039-11775165)
chr7 (584-719)||(29741141-29741282)
chr7 (510-685)||(16196568-16196742)
chr7 (510-713)||(17161226-17161426)
chr7 (651-732)||(20910493-20910574)
chr7 (82-182)||(16196053-16196153)
chr7 (525-644)||(16175156-16175275)
chr7 (79-212)||(20911563-20911696)
chr7 (656-719)||(13761694-13761757)
chr7 (98-212)||(3171590-3171704)
chr7 (106-195)||(20147595-20147684)
chr7 (376-438)||(16196435-16196497)
chr7 (56-192)||(6461080-6461215)
chr7 (154-212)||(9128350-9128408)
chr7 (141-212)||(16093871-16093942)
chr7 (141-195)||(17162235-17162289)
chr7 (369-438)||(8324245-8324314)
chr7 (369-438)||(8327444-8327513)
chr7 (572-625)||(13765379-13765432)
chr7 (175-212)||(13766479-13766516)
chr7 (141-206)||(15010167-15010232)
[»] chr2 (9 HSPs)
chr2 (510-732)||(21654140-21654355)
chr2 (513-725)||(28774163-28774365)
chr2 (511-730)||(18995168-18995386)
chr2 (90-212)||(17739971-17740093)
chr2 (90-213)||(34897835-34897958)
chr2 (56-192)||(23153984-23154119)
chr2 (56-192)||(23565241-23565376)
chr2 (144-207)||(22577012-22577075)
chr2 (150-212)||(24280756-24280818)
[»] chr1 (15 HSPs)
chr1 (511-732)||(20407782-20408003)
chr1 (564-732)||(21719667-21719835)
chr1 (511-730)||(21423197-21423416)
chr1 (554-732)||(22615139-22615317)
chr1 (511-730)||(18621898-18622116)
chr1 (339-439)||(20407610-20407710)
chr1 (656-730)||(23475833-23475907)
chr1 (618-730)||(21978628-21978740)
chr1 (654-712)||(21402675-21402733)
chr1 (90-182)||(9167291-9167383)
chr1 (323-396)||(22614969-22615043)
chr1 (511-554)||(21719602-21719645)
chr1 (150-212)||(21422155-21422217)
chr1 (166-211)||(22614295-22614340)
chr1 (401-438)||(22615037-22615074)
[»] chr5 (16 HSPs)
chr5 (532-732)||(24194145-24194345)
chr5 (510-732)||(17364097-17364319)
chr5 (511-730)||(19316424-19316642)
chr5 (511-732)||(17169532-17169751)
chr5 (511-732)||(26727652-26727868)
chr5 (511-730)||(19268373-19268595)
chr5 (511-624)||(22468511-22468624)
chr5 (564-712)||(26867849-26867997)
chr5 (256-438)||(26727392-26727579)
chr5 (510-621)||(13456898-13457009)
chr5 (510-651)||(26132609-26132749)
chr5 (244-414)||(17363835-17364003)
chr5 (362-438)||(22468396-22468472)
chr5 (141-212)||(19267319-19267390)
chr5 (239-329)||(19268102-19268192)
chr5 (628-730)||(31479591-31479693)
[»] scaffold0530 (1 HSPs)
scaffold0530 (543-732)||(2939-3125)
[»] scaffold0190 (2 HSPs)
scaffold0190 (511-732)||(1639-1857)
scaffold0190 (257-439)||(1385-1568)
[»] scaffold0007 (5 HSPs)
scaffold0007 (288-444)||(206065-206220)
scaffold0007 (594-732)||(204779-204920)
scaffold0007 (510-591)||(205918-205999)
scaffold0007 (510-591)||(210888-210969)
scaffold0007 (282-367)||(211062-211147)
[»] chr6 (28 HSPs)
chr6 (511-732)||(14566539-14566744)
chr6 (511-730)||(19725361-19725573)
chr6 (511-725)||(19977284-19977503)
chr6 (511-730)||(10974827-10975046)
chr6 (510-664)||(14354227-14354381)
chr6 (510-716)||(23294256-23294462)
chr6 (511-623)||(23299586-23299698)
chr6 (550-730)||(19980203-19980383)
chr6 (510-713)||(12463667-12463870)
chr6 (311-438)||(14354028-14354155)
chr6 (333-440)||(19977574-19977681)
chr6 (510-689)||(12487672-12487848)
chr6 (343-438)||(23294533-23294626)
chr6 (93-195)||(23089888-23089990)
chr6 (95-175)||(17913335-17913415)
chr6 (70-182)||(23298617-23298729)
chr6 (93-180)||(22544814-22544901)
chr6 (141-195)||(12465574-12465628)
chr6 (334-438)||(12487496-12487600)
chr6 (141-195)||(9520707-9520761)
chr6 (141-214)||(12486768-12486841)
chr6 (510-551)||(23349707-23349748)
chr6 (564-644)||(23350242-23350322)
chr6 (150-212)||(19991285-19991347)
chr6 (350-438)||(16896462-16896551)
chr6 (283-438)||(23299354-23299509)
chr6 (175-222)||(19728504-19728551)
chr6 (150-211)||(14486829-14486890)
[»] scaffold0228 (3 HSPs)
scaffold0228 (511-732)||(7038-7259)
scaffold0228 (511-732)||(14620-14841)
scaffold0228 (511-732)||(24572-24793)
[»] scaffold0111 (2 HSPs)
scaffold0111 (515-685)||(30260-30429)
scaffold0111 (90-195)||(31293-31398)
[»] chr8 (10 HSPs)
chr8 (512-685)||(21695023-21695197)
chr8 (511-730)||(18830650-18830864)
chr8 (510-713)||(25263200-25263404)
chr8 (333-438)||(21694845-21694950)
chr8 (630-713)||(24624919-24625002)
chr8 (132-214)||(17508576-17508658)
chr8 (511-595)||(17622412-17622496)
chr8 (630-730)||(18828536-18828636)
chr8 (83-205)||(25262238-25262360)
chr8 (150-212)||(24383502-24383564)
[»] scaffold1114 (3 HSPs)
scaffold1114 (510-724)||(1819-2032)
scaffold1114 (90-206)||(228-343)
scaffold1114 (312-435)||(1623-1746)
[»] scaffold0001 (1 HSPs)
scaffold0001 (511-732)||(154921-155141)
[»] scaffold0417 (2 HSPs)
scaffold0417 (518-712)||(3548-3742)
scaffold0417 (56-182)||(2562-2688)
[»] scaffold0412 (1 HSPs)
scaffold0412 (511-713)||(3151-3344)
[»] scaffold0305 (1 HSPs)
scaffold0305 (511-644)||(2452-2585)
[»] scaffold0004 (1 HSPs)
scaffold0004 (630-732)||(371327-371429)
[»] scaffold0093 (1 HSPs)
scaffold0093 (564-685)||(51804-51924)
[»] scaffold0333 (1 HSPs)
scaffold0333 (56-180)||(1151-1275)
[»] scaffold0193 (1 HSPs)
scaffold0193 (630-732)||(18873-18975)
[»] scaffold0064 (1 HSPs)
scaffold0064 (511-644)||(10066-10204)
[»] scaffold0282 (1 HSPs)
scaffold0282 (90-195)||(20009-20114)
[»] scaffold0184 (2 HSPs)
scaffold0184 (661-732)||(10620-10691)
scaffold0184 (510-609)||(5330-5428)
[»] scaffold0205 (1 HSPs)
scaffold0205 (630-732)||(1065-1167)
[»] scaffold0040 (1 HSPs)
scaffold0040 (144-212)||(48411-48479)
[»] scaffold2087 (1 HSPs)
scaffold2087 (511-596)||(117-202)
[»] scaffold0964 (1 HSPs)
scaffold0964 (651-719)||(2231-2299)
[»] scaffold0039 (1 HSPs)
scaffold0039 (567-610)||(106050-106093)
[»] scaffold0024 (1 HSPs)
scaffold0024 (144-195)||(100639-100690)


Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 43 - 440
Target Start/End: Complemental strand, 2547739 - 2547343
Alignment:
Q  43 acatcatcatagttcattatcaacaaataacactttaaggaaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaaga 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547739 acatcatcatagttcattatcaacaaataacactttaaggaaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaaga 2547640  T
Q  143 cattcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaagcctcatactaacatggggttttgtattggg 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2547639 cattcatcatattaaacactcaatcatcattgattcattcacattcta-catactaacatgaattcaaaacctcatactaacatggggttttgtattggg 2547541  T
Q  243 caactcgccacaacgagttacaccagaataggtcccctattcttggttgttccctctcgagaactctccaattttcaccaaaaatccttgtttttaatcc 342  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  2547540 caactcaccacaacgagttacaccagaacaggtcccctgttcttggttgttccctctcgggaactctccaattttcacccaaaatccttgtttttaatcc 2547441  T
Q  343 cctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatttt 440  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547440 cctttgacccaaattcgttcccaaaacttgtacattagtttatatacataaaaagataatcaaaacaacaaccaacatggaatcataacatcaatttt 2547343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 510 - 732
Target Start/End: Complemental strand, 2547301 - 2547079
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2547301 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcacaaattc 2547202  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatc 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547201 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatc 2547102  T
Q  710 atactcacaaattcacttgaatt 732  Q
    |||||||||||||||||||||||    
T  2547101 atactcacaaattcacttgaatt 2547079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 510 - 732
Target Start/End: Original strand, 15538971 - 15539193
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||| ||||||||| ||||||    
T  15538971 caaacaatcacaccaattcaaaacccatcaacatacaaacataatcaaacatttataaagtgaatttaaacatgtttcaacaataatcactcatcaattc 15539070  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatc 709  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| |||    
T  15539071 atgatttacactcaaataagcaaaaatcatcaaaatcacttaacaacaacaacaactatcaagtttaatcacataactcaacaatttcatgaagttgatc 15539170  T
Q  710 atactcacaaattcacttgaatt 732  Q
    |||  ||||||||||| ||||||    
T  15539171 atatccacaaattcacatgaatt 15539193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 515 - 732
Target Start/End: Original strand, 10725901 - 10726117
Alignment:
Q  515 aaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgat 614  Q
    |||||||| ||||||||||| ||||| |||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  10725901 aaccacacaaattcaaacccaatcaatatacaaacataa-caaacattcatgaagtgaattcaaacatgtttcaacaacaatcactcaccaattcatgat 10725999  T
Q  615 ttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatact 714  Q
    |||||||||| |||  ||||||||||||||  ||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||| ||||||||||     
T  10726000 ttacactcaattaataaaaaatcatcaaaacaacttaacaacaacaacaactatgaagtttaagctcttaacataacaattttatgaaatttatcatacc 10726099  T
Q  715 cacaaattcacttgaatt 732  Q
     ||||||| || ||||||    
T  10726100 tacaaattaacatgaatt 10726117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 511 - 730
Target Start/End: Original strand, 5347320 - 5347539
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||||| |||  ||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||    
T  5347320 aaacaaccacaccaatttaaattccatcaacatacaaagataaacaaacattaatgaagtgaattcaaacatgtttcaacaacaatcaatcaccaattca 5347419  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     |||| |||||||| |||  |||||||| |||||  ||| | |  |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  5347420 tgattcacactcaactaataaaaaatcaacaaaacaactcatcgccaacaacaactatgaagtttaagctcttaacacaacaatttcatgaagtttatca 5347519  T
Q  711 tactcacaaattcacttgaa 730  Q
    ||| ||||| ||||| ||||    
T  5347520 tacccacaatttcacatgaa 5347539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 511 - 732
Target Start/End: Complemental strand, 19632142 - 19631923
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||||||||||||||||||||||||  | ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  19632142 aaacaaccacaccaattcaaaccccatcaacatacaaacatgcataaacatttatgaagtgaatttaagcatgtttcaacaataatcactcatcaattca 19632043  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     ||||||||||||| ||| |||||||||||||||  |||||  ||||| ||||||  ||| |||||||||||||||||||  | ||||||||||||||||    
T  19632042 tgatttacactcaattaagcaaaaatcatcaaaacaacttataaacaaaaacaac--tgaggtttaagcacataacacaatcaattcatgaagtttatca 19631945  T
Q  711 tactcacaaattcacttgaatt 732  Q
    |||   ||||||||| ||||||    
T  19631944 taccagcaaattcacatgaatt 19631923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 511 - 712
Target Start/End: Original strand, 13440050 - 13440250
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||  || || ||||    
T  13440050 aaacaaccacaccaattcaaatctcataaacatacaaacataaacaaacattcatgaagtgaattcaaacatgtttcaacaacaatcaaccaacatttca 13440149  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcac--ataacacaacaatttcatgaagtttat 708  Q
     |||| |||||||| |||  ||||||||||||||  |||   |||||||||||||| |||||||||||| |  |||||||||||||||||||||||||||    
T  13440150 tgattcacactcaattaataaaaaatcatcaaaacaact---caacaacaacaactctgaagtttaagctcttataacacaacaatttcatgaagtttat 13440246  T
Q  709 cata 712  Q
    ||||    
T  13440247 cata 13440250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 512 - 732
Target Start/End: Complemental strand, 16219088 - 16218878
Alignment:
Q  512 aacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcac 611  Q
    ||||||||||||||||||||||||||||||||||||||||          | | |||||||||| ||||| || |||||||||||| || || |||  |     
T  16219088 aacaaccacaccaattcaaaccccatcaacatacaaacat----------ttaagaagtgaattcaaacacgtctcaacaacaatctcttactaatctat 16218999  T
Q  612 gatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcat 711  Q
    ||||||||||||| ||| |||||||||||||||  ||||| |||||||| | |||||||||||||||| | |||||||||||||||||||||||||||||    
T  16218998 gatttacactcaattaatcaaaaatcatcaaaacaacttatcaacaacagctactatgaagtttaagctcttaacacaacaatttcatgaagtttatcat 16218899  T
Q  712 actcacaaattcacttgaatt 732  Q
    || ||||||||||||||||||    
T  16218898 acccacaaattcacttgaatt 16218878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 518 - 732
Target Start/End: Original strand, 27052373 - 27052587
Alignment:
Q  518 cacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgattt- 616  Q
    ||||| |||||||| |||||||| |||||||  |||||||| ||| |||||||||||| ||| ||||||||||||||| ||||||| |||||| |||||     
T  27052373 cacactaattcaaatcccatcaatatacaaatgtaaacaaacatttatgaagtgaattcaaagatgtttcaacaacaaacactcac-aattcatgatttt 27052471  T
Q  617 acactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactca 716  Q
    |||||||| ||| ||||| ||| ||||   ||| ||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||||| ||    
T  27052472 acactcaattaatcaaaattcaccaaagcaactcaacaacaacaacaactatgaagtttaagctcttaacacagcaatttcatcaagtttatcataccca 27052571  T
Q  717 caaattcacttgaatt 732  Q
    ||||||||| ||||||    
T  27052572 caaattcacatgaatt 27052587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 510 - 732
Target Start/End: Original strand, 10934404 - 10934626
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    |||||||||| |||||||||||||||||||||||| ||| | ||||||| |||||||||||||||| ||| |  ||| | ||| | |||||||||| |||    
T  10934404 caaacaaccataccaattcaaaccccatcaacataaaaatacaaacaaacattcatgaagtgaattcaaatacattttagcaatattcactcaccagttc 10934503  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatc 709  Q
    | ||||||||||||| ||| |||||||| ||||||  ||  ||||||||||||||||||| ||||||||| | ||||||||| ||||| | |||||||||    
T  10934504 atgatttacactcaattaatcaaaaatcttcaaaacaacacaacaacaacaacaactatggagtttaagctcttaacacaacgatttcgttaagtttatc 10934603  T
Q  710 atactcacaaattcacttgaatt 732  Q
    ||   || |||||||| ||||||    
T  10934604 atttccataaattcacatgaatt 10934626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 510 - 732
Target Start/End: Original strand, 19614337 - 19614561
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||| |||| |||||||||||||||||||||||||||||  | ||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  19614337 caaacaatcacatcaattcaaaccccatcaacatacaaacatgtataaacatttatgaagtgaatttaaacatgtttcaacaataatcacttaccaattc 19614436  T
Q  610 acgatttacactcaaataa--acaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagttta 707  Q
    |     |||||| |  |||  | ||||||| ||| ||  ||||| ||||||||||||| ||||| ||||| ||||||||| | |||||||||||||||||    
T  19614437 attgaatacacttagttaagtaaaaaaatcttcagaacaacttatcaacaacaacaacaatgaaatttaatcacataacatatcaatttcatgaagttta 19614536  T
Q  708 tcatactcacaaattcacttgaatt 732  Q
    |||||  ||||||||||| ||||||    
T  19614537 tcatatccacaaattcacatgaatt 19614561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 510 - 644
Target Start/End: Complemental strand, 40354520 - 40354386
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||||||| |||||  ||||||||| ||||||    
T  40354520 caaacaaccacaccaattcaaaccccatcaacatataaacataaataaacattcaagaagtgaatttaaacatgttccaacataaatcactcatcaattc 40354421  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaa 644  Q
    | | |||||||| |||||| |||||||||||||||    
T  40354420 atggtttacacttaaataagcaaaaatcatcaaaa 40354386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 511 - 732
Target Start/End: Complemental strand, 19660035 - 19659825
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||| ||||||||||||||||||||||||||||||||||   | | | ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  19660035 aaacatccacaccaattcaaaccccatcaacatacaaacaggtatagacatttatgaagtgaatttaagcatgtttcaacaataatcactcatcaattca 19659936  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     ||||||||||||| ||| |||||||||||||           ||||||||||||||||| || ||||||||||| ||||  | |||  |||||||||||    
T  19659935 tgatttacactcaattaagcaaaaatcatcaa-----------aacaacaacaactatgaggtctaagcacataagacaatcaattctagaagtttatca 19659847  T
Q  711 tactcacaaattcacttgaatt 732  Q
    ||| | ||||||||| ||||||    
T  19659846 tacccgcaaattcacatgaatt 19659825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 630 - 730
Target Start/End: Complemental strand, 12696708 - 12696608
Alignment:
Q  630 caaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttga 729  Q
    |||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||    
T  12696708 caaaaatcatcaaagtaacttatcaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatacccacaatttcacatga 12696609  T
Q  730 a 730  Q
    |    
T  12696608 a 12696608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 511 - 730
Target Start/End: Complemental strand, 12252988 - 12252769
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||||| ||||||||| |   ||||||||||  |||  |||| |||||| |||||| |||||||||||||||  ||||||||||    
T  12252988 aaacaaccacaccaattcaaacaccatcaacacattgacataaacaatcattagtgaaatgaattcaaacatatttcaacaacaatcatacaccaattca 12252889  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     || || ||||||||||   || ||||||  |||  ||| || ||||||||||||||||||||||||||   |||||||| |  || |||||||||||||    
T  12252888 tgaatttcactcaaatagtaaataatcatgtaaacaactcaataacaacaacaactatgaagtttaagctactaacacaagatattgatgaagtttatca 12252789  T
Q  711 tactcacaaattcacttgaa 730  Q
    ||| || || ||||| ||||    
T  12252788 tacacagaatttcacatgaa 12252769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 334 - 438
Target Start/End: Complemental strand, 19660212 - 19660108
Alignment:
Q  334 ttttaatcccctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacat 433  Q
    |||| ||||||||||| ||||||||||  ||||| ||||| |||||||||||||||||||||||  ||||||||||||||| || |||||||||||||||    
T  19660212 ttttgatcccctttgatccaaattcgtctccaaaacttgttcattagtttatatacatcaaaaggcaatcaaaacaacaacaaatatggaatcataacat 19660113  T
Q  434 caatt 438  Q
    |||||    
T  19660112 caatt 19660108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 333 - 444
Target Start/End: Complemental strand, 16219266 - 16219156
Alignment:
Q  333 tttttaatcccctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataaca 432  Q
    ||||| |||||||| ||| ||||||||| ||| || |||| |||||||||||||||||||||||||  |||||||||||||| |||||| ||| ||||||    
T  16219266 ttttttatcccctt-gactcaaattcgtcccctaaacttgaacattagtttatatacatcaaaagactatcaaaacaacaacaaacatgaaatgataaca 16219168  T
Q  433 tcaattttcacc 444  Q
    ||||||||||||    
T  16219167 tcaattttcacc 16219156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 246 - 438
Target Start/End: Original strand, 27051345 - 27051535
Alignment:
Q  246 ctcgccacaacgagttacaccagaataggtc-ccctattcttggttgttccctctcgagaactctccaattttcaccaaaaatccttgtttttaatcccc 344  Q
    ||||||| |||||||| || |||| |||||| ||||||| ||||||||||||||||| |||||  | |||||||||| |||||||| |||||| ||||||    
T  27051345 ctcgccaaaacgagttccaacagattaggtcgccctatt-ttggttgttccctctcgggaacttccaaattttcacccaaaatcctcgtttttgatcccc 27051443  T
Q  345 tttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
      |||||| ||||||     ||| |||||  | ||||||||| ||||||||||  | ||||||||||||| ||||| |||||||||||||||||    
T  27051444 --tgaccccaattcgactaaaaaacttgtgtactagtttataaacatcaaaaggcattcaaaacaacaacaaacatcgaatcataacatcaatt 27051535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 511 - 665
Target Start/End: Complemental strand, 30098883 - 30098729
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||||| |||  ||||||||||| |||||| |||||  ||| ||| |||||||| ||||||||||||||||||||||   |||||  ||    
T  30098883 aaacaaccacaccaattaaaaatccatcaacatagaaacatcaacaatcattaatggagtgaattcaaacatgtttcaacaacaatcatataccaaacca 30098784  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaac 665  Q
     || || ||||||||||  |||||||||| ||||  | | |||||||||||||||    
T  30098783 tgaatttcactcaaatagtcaaaaatcattaaaacaagtcaacaacaacaacaac 30098729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 630 - 713
Target Start/End: Complemental strand, 15045308 - 15045225
Alignment:
Q  630 caaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatac 713  Q
    |||||||||||||||  | ||| ||||||||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||    
T  15045308 caaaaatcatcaaaacaagttatcaacaacaacaaccatgagttttaagcacataacacatcaatttcatgaagtttatcatac 15045225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 16220006 - 16219934
Alignment:
Q  144 attcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaagcctc 216  Q
    ||||||||||||| ||| |||||||||||| |||||| |||||| |||||||||||||||| |||||||||||    
T  16220006 attcatcatattatacaatcaatcatcatttattcatccacattatatcatactaacatgatttcaaagcctc 16219934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 334 - 438
Target Start/End: Complemental strand, 19632315 - 19632215
Alignment:
Q  334 ttttaatcccctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacat 433  Q
    |||| |||||||||||||||||||||| || ||| ||||| |||||||||||| ||||||||||  ||| |||||||||   ||| ||||||||||||||    
T  19632315 ttttgatcccctttgacccaaattcgtccctaaaacttgttcattagtttata-acatcaaaaggcaattaaaacaaca---aacgtggaatcataacat 19632220  T
Q  434 caatt 438  Q
    |||||    
T  19632219 caatt 19632215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 15538838 - 15538898
Alignment:
Q  378 tagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    ||||||||||||||||||||  ||||||||||||||| |||||| ||||||||||||||||    
T  15538838 tagtttatatacatcaaaaggcaatcaaaacaacaacaaacatgaaatcataacatcaatt 15538898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 9637333 - 9637244
Alignment:
Q  93 gtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattc 182  Q
    |||||| ||||||||||| ||||||| ||||  ||| | ||||| || ||||||||||||||| ||||  ||||||||||||||||||||    
T  9637333 gtttcaaaatcacattttgcataaaaaacggacaactaaccacatcatgacattcatcatatttaacatccaatcatcattgattcattc 9637244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 17385786 - 17385875
Alignment:
Q  93 gtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattc 182  Q
    |||||||||||| ||||| ||||||||||||  ||| | ||||| || |||| |||||||||||||||| |||  |||||||||||||||    
T  17385786 gtttcacaatcatattttgcataaaagacggaaaactaaccacatcatgacaatcatcatattaaacacccaactatcattgattcattc 17385875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 626 - 730
Target Start/End: Original strand, 4813913 - 4814016
Alignment:
Q  626 taaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcac 725  Q
    ||||||||| | |||| ||  ||||||||||||||| | | ||||  ||||||||| |||| |||||||||||||||||||||||||  ||||| |||||    
T  4813913 taaacaaaagttatcacaacaacttaacaacaacaaaatc-atgagttttaagcacgtaacccaacaatttcatgaagtttatcatatccacaatttcac 4814011  T
Q  726 ttgaa 730  Q
     ||||    
T  4814012 atgaa 4814016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 15046331 - 15046261
Alignment:
Q  141 gacattcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    |||||||||||||||||| || ||||||||||  ||||  |||| ||| |||||||||||||||||||||||    
T  15046331 gacattcatcatattaaa-acccaatcatcatcaattctatcaccttcaatcatactaacatgaattcaaag 15046261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 11833568 - 11833506
Alignment:
Q  150 catattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    ||||||| |||| ||||||||||  |||||||| ||||||||||||  |||||||||||||||    
T  11833568 catattagacacccaatcatcatcaattcattctcattctatcatataaacatgaattcaaag 11833506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 46472831 - 46472769
Alignment:
Q  150 catattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    |||||||||| ||| ||||||||  ||||| || ||||||||||||| |||||||||||||||    
T  46472831 catattaaacgctcgatcatcatcaattcaatctcattctatcatacaaacatgaattcaaag 46472769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 431
Target Start/End: Original strand, 10934245 - 10934326
Alignment:
Q  350 cccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataac 431  Q
    ||||||||||   ||||| |||||||| ||||||||| |||| |||||  | | ||||||||||||||||| ||||||||||    
T  10934245 cccaaattcgactccaaaacttgtacactagtttataaacattaaaaggcatttaaaacaacaaccaacattgaatcataac 10934326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 25486654 - 25486601
Alignment:
Q  70 taacactttaaggaaacgttaaagtttcacaatcacattttacataaaagacgg 123  Q
    |||||| | ||||||||  |||||||| ||||||||||||||||||||||||||    
T  25486654 taacacctcaaggaaacaataaagttttacaatcacattttacataaaagacgg 25486601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 5346363 - 5346409
Alignment:
Q  175 attcattcacattctatcatactaacatgaattcaaagcctcatact 221  Q
    |||||||||||||  ||||||||||||||||||||||| ||| ||||    
T  5346363 attcattcacattaaatcatactaacatgaattcaaagtctcctact 5346409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 8023289 - 8023379
Alignment:
Q  132 ccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaagcctcatacta 222  Q
    ||||| || ||||| |||||  |||||||||||||| | |   |||| ||||||||  ||||||||||||||||||||||| ||| |||||    
T  8023289 ccacatcacgacatccatcaatttaaacactcaatccttaacaattcgttcacattaaatcatactaacatgaattcaaagtctcctacta 8023379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 19633052 - 19633006
Alignment:
Q  132 ccacaccaagacattcatcatattaaacactcaatcatcattgattc 178  Q
    ||||| ||||| ||||| ||||||||||||||| |||||||||||||    
T  19633052 ccacatcaagatattcaccatattaaacactcattcatcattgattc 19633006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 10933497 - 10933554
Alignment:
Q  150 catattaaacactcaatcatcattgattcattcacattctatcatactaacatgaatt 207  Q
    ||||||| |||  ||||||||||  ||||||||||||| ||||||| |||||||||||    
T  10933497 catattagacatccaatcatcatcaattcattcacattttatcatattaacatgaatt 10933554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 14305710 - 14305661
Alignment:
Q  386 atacatcaaaagataatcaaaacaacaaccaacatggaatcataacatca 435  Q
    ||||||||||||| |||||||||||  || ||||| ||||||||||||||    
T  14305710 atacatcaaaagacaatcaaaacaattacaaacatcgaatcataacatca 14305661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 38278039 - 38277998
Alignment:
Q  141 gacattcatcatattaaacactcaatcatcattgattcattc 182  Q
    |||||||||| |||||| || |||||||||||||||||||||    
T  38278039 gacattcatcgtattaagcattcaatcatcattgattcattc 38277998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 3e-81; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 511 - 732
Target Start/End: Original strand, 15711344 - 15711565
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15711344 aaacaaccacacaaattcaaaccccatcaacacacaaacataaacaaacattcatgaagtgaattcaaacatgtttcaacaacaatcactcaccaattca 15711443  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     |||| |||||||| ||| |||||||| ||||||  ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||    
T  15711444 tgattcacactcaattaatcaaaaatcttcaaaacaacttaacaacaacaacaactatgaagtttaatctcttaacacaacaatttcatgaagtttatca 15711543  T
Q  711 tactcacaaattcacttgaatt 732  Q
    ||| |||||||| || ||||||    
T  15711544 tacccacaaatttacatgaatt 15711565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 510 - 732
Target Start/End: Original strand, 11776149 - 11776370
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  11776149 caaacaaccacatcaattcaaaccc-atcaacatacaaacataaacaaacattcatgaagtgattttaaacacatttcaacaacaatcactcaccaattc 11776247  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatc 709  Q
    | |||| |||||||| ||| |||||||||| ||||  ||||| |||||||||||| |||||||||||||| |  || |||||||||||||||||||||||    
T  11776248 atgattcacactcaattaatcaaaaatcattaaaacaacttatcaacaacaacaattatgaagtttaagctctgaagacaacaatttcatgaagtttatc 11776347  T
Q  710 atactcacaaattcacttgaatt 732  Q
    | || ||||||||||||||||||    
T  11776348 acacccacaaattcacttgaatt 11776370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 511 - 730
Target Start/End: Original strand, 21981882 - 21982099
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||| |||| |||||||||| || |||||||||||| ||| |||||||||||| ||||||||||||||||||||| | || |||||||    
T  21981882 aaacaaccacaccaatccaaatcccatcaacacacgaacataaacaaacattaatgaagtgaattcaaacatgtttcaacaacaatcccacatcaattca 21981981  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacat-aacacaacaatttcatgaagtttatc 709  Q
     |||||| || ||||||| ||||| |||||||||  |||   ||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||    
T  21981982 tgatttatacgcaaataatcaaaattcatcaaaacaact---caacaacaacaactatgaagtttaagctcttaaacacaacaatttcattaagtttatc 21982078  T
Q  710 atactcacaaattcacttgaa 730  Q
    |||| ||||| ||||| ||||    
T  21982079 atacccacaatttcacatgaa 21982099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 510 - 729
Target Start/End: Original strand, 17959794 - 17960010
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| ||  |||  |||||||||||||||||||||||||||| ||||||||| ||||||    
T  17959794 caaacaaccacacaaattcaaaccccatcaagatacaaacataaataagcatttgtgaagtgaatttaaacatgtttcaacaataatcactcatcaattc 17959893  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatc 709  Q
    | || |||||||||||||| ||||||||| |||||  ||||| ||||   ||||||| |||  ||||||||||||||| ||||| ||||||||||||||     
T  17959894 atgacttacactcaaataagcaaaaatcaccaaaacaacttatcaac---aacaactttgagttttaagcacataacataacaaattcatgaagtttatt 17959990  T
Q  710 atactcacaaattcacttga 729  Q
    ||||  | ||||||||||||    
T  17959991 ataccaataaattcacttga 17960010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 510 - 732
Target Start/End: Original strand, 16571127 - 16571336
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaaca-atcactcaccaatt 608  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||| |||||| | |||||||||  |||||||||||||    
T  16571127 caaacaacaacaccaattcaaaccctatcaacatagaaacataaacaaacactcatgaagtgaattcaaacatatctcaacaacatgtcactcaccaatt 16571226  T
Q  609 cacgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttat 708  Q
    || ||||||||||||| |||  ||||||||||||              ||||||||||||||||||||||| | |||||||||||||| |||||||||||    
T  16571227 catgatttacactcaattaataaaaaatcatcaa--------------aacaacaactatgaagtttaagctcttaacacaacaattttatgaagtttat 16571312  T
Q  709 catactcacaaattcacttgaatt 732  Q
    ||||| ||||||||||||||||||    
T  16571313 catacccacaaattcacttgaatt 16571336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 511 - 665
Target Start/End: Complemental strand, 12334851 - 12334697
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||||||||| |||||||||| | |||||| || ||| ||| |||||||||||| | ||||||||||||| ||||||  ||||||||||    
T  12334851 aaacaaccacaccaattcaaaacccatcaacacataaacatgaataaacattaatgaagtgaattcagacatgtttcaacaccaatcatacaccaattca 12334752  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaac 665  Q
     || || ||||||||||   ||||||||| ||||  ||| |||||||||||||||    
T  12334751 tgaatttcactcaaatagtgaaaaatcatgaaaacaactcaacaacaacaacaac 12334697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 511 - 627
Target Start/End: Original strand, 9566500 - 9566616
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||| |||| |||||||||| | || |||||||||  ||| |||||||||||| ||||||||||||||||||||||  ||||||||||    
T  9566500 aaacaaccacaccaatccaaatcccatcaacacataagcataaacaatcattaatgaagtgaattcaaacatgtttcaacaacaatcatacaccaattca 9566599  T
Q  611 cgatttacactcaaata 627  Q
     || |||||||||||||    
T  9566600 tgaattacactcaaata 9566616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 435
Target Start/End: Original strand, 17959627 - 17959728
Alignment:
Q  334 ttttaatcccctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacat 433  Q
    |||| |||||||||||||| |||| |||||| || |||||  |||| || ||||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  17959627 ttttgatcccctttgaccccaatttgttccccaaacttgtttattatttaatatacatcaaaagacaatcaaaacaacatcaaacatggaatcataacat 17959726  T
Q  434 ca 435  Q
    ||    
T  17959727 ca 17959728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 11775304 - 11775380
Alignment:
Q  144 attcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaagcctcatac 220  Q
    |||||||||||||||||| ||||| ||||  ||||||||||||||||||||| ||||||||||||||| | ||||||    
T  11775304 attcatcatattaaacacccaatcctcatctattcattcacattctatcatattaacatgaattcaaaacttcatac 11775380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 16570477 - 16570557
Alignment:
Q  132 ccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    ||||| || ||||||||||||||| ||||| || |||| ||  ||||||||||||||||||||||||||||||||||||||    
T  16570477 ccacatcatgacattcatcatattgaacacccagtcattatcaattcattcacattctatcatactaacatgaattcaaag 16570557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 12451849 - 12451735
Alignment:
Q  90 aaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattct 189  Q
    ||||||||| ||| |||||| |||||||||||||  ||| | ||||| || ||||||||||||||||||||  |||||| |||||||||||||  |||||    
T  12451849 aaagtttca-aattacatttcacataaaagacggacaactatccacatcacgacattcatcatattaaacatccaatcaacattgattcattcttattct 12451751  T
Q  190 atcatactaacatgaa 205  Q
    |||||| || ||||||    
T  12451750 atcatattatcatgaa 12451735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 710
Target Start/End: Complemental strand, 12344284 - 12344096
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||| ||||| ||||||||||      ||||||||    || |||||||||||| |||| |||||||||  ||||||   |||||||||    
T  12344284 aaacaaccacaccaactcaaaacccatcaaca------cataaaca----ttaatgaagtgaattcaaacgtgtttcaacgccaatcatagaccaattca 12344195  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     || || |||| |||||  |||||||||| ||||  ||| ||||||||||| ||| |||||||| |||   ||||||| || | ||||||||||||||||    
T  12344194 tgaatttcactgaaatagtcaaaaatcatgaaaacaactcaacaacaacaataac-atgaagttaaagataataacaccaccaattcatgaagtttatca 12344096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 11776002 - 11776078
Alignment:
Q  362 cccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    |||||| |||||||| ||| ||||| ||||||||||  | | ||||||||||| ||||| |||||||||||||||||    
T  11776002 cccaaaacttgtacactagcttataaacatcaaaaggcatttaaaacaacaacaaacatcgaatcataacatcaatt 11776078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 18420169 - 18420033
Alignment:
Q  56 tcattatcaacaaataacactttaaggaaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatatt 155  Q
    |||| |||||||| || ||| ||||||||||  ||  |||| | |||||| |||| ||||||||||||  ||  | ||||| ||  ||||| |||| |||    
T  18420169 tcatcatcaacaactatcaccttaaggaaacaatatcgttttaaaatcacgttttgcataaaagacggacaattaaccacatcataacatttatcaaatt 18420070  T
Q  156 aaacactcaatcatcattgattcattcacattctatc 192  Q
    |||||| ||||||||||||||||||||  ||||||||    
T  18420069 aaacacccaatcatcattgattcattcttattctatc 18420033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 610
Target Start/End: Complemental strand, 19605965 - 19605865
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||| || ||| ||||||||||||||  |||||||||||||| | ||  ||  || ||||||||||| |||||||| ||||| ||||||||| ||||||    
T  19605965 caaactacaacaacaattcaaaccccaataacatacaaacatatataatcatatataaagtgaatttacacatgtttgaacaataatcactcatcaattc 19605866  T
Q  610 a 610  Q
    |    
T  19605865 a 19605865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 28799866 - 28799936
Alignment:
Q  142 acattcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    |||||||||  ||||||||  ||| ||| || || ||||||||||||||||||| ||||||| ||||||||    
T  28799866 acattcatccaattaaacatccaaacattatagactcattcacattctatcatattaacatggattcaaag 28799936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 10115590 - 10115517
Alignment:
Q  141 gacattcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaagcc 214  Q
    ||||||||| ||||||||||| ||| ||||| ||||||||||  |||||||| || || | ||||| |||||||    
T  10115590 gacattcataatattaaacacccaaccatcaatgattcattcttattctatcctattatcgtgaatacaaagcc 10115517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 11775914 - 11775983
Alignment:
Q  261 tacaccagaataggtccccta-ttcttggttgttccctctcgagaactctccaattttcaccaaaaatcc 329  Q
    ||||||| || ||||| |||| |||||||||||||||||||| |||||| | | |||||||| |||||||    
T  11775914 tacaccaaaacaggtcacctagttcttggttgttccctctcgggaactcccaatttttcacccaaaatcc 11775983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 2e-79; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 511 - 732
Target Start/End: Complemental strand, 11774223 - 11774001
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||    
T  11774223 aaacaaccacaccaattcaaaccacatcaacatacaaacataaacaaatattcatgaagtgagttcaaacatatttcaacaacaatcactcaccaattca 11774124  T
Q  611 cgatttacactcaaataa-acaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatc 709  Q
     ||||| |||||||  || |  |||||||||||||  ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11774123 tgattttcactcaatcaataagaaaatcatcaaaacaacttatcaacaacaacaactatgaagtttaagcgcataacacaacaatttcatgaagtttatc 11774024  T
Q  710 atactcacaaattcacttgaatt 732  Q
    |||  ||||||||||||||||||    
T  11774023 atatccacaaattcacttgaatt 11774001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 511 - 719
Target Start/End: Original strand, 29731043 - 29731256
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaat--- 607  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||| ||| | |||||||||| ||||||||||||||||||||||| |||||||       
T  29731043 aaacaaccacaccaattcaaacccaa-caacatacaaacataaacaaacatttaagaagtgaattcaaacatgtttcaacaacaatcacacaccaattca 29731141  T
Q  608 tcacgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaac---tatgaagtttaagcacataacacaacaatttcatgaagt 704  Q
    ||| ||||||||||||||||| ||||| |||||||||  ||| |||||||||||||||   |||||||||||||| | |||||  |||||||||||||||    
T  29731142 tcatgatttacactcaaataatcaaaattcatcaaaacaactcaacaacaacaacaacaattatgaagtttaagctcttaacatgacaatttcatgaagt 29731241  T
Q  705 ttatcatactcacaa 719  Q
    |||||||||||||||    
T  29731242 ttatcatactcacaa 29731256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 258 - 437
Target Start/End: Complemental strand, 11774476 - 11774297
Alignment:
Q  258 agttacaccagaataggtcccctattcttggttgttccctctcgagaactctccaattttcaccaaaaatccttgtttttaatcccctttgacccaaatt 357  Q
    |||||||||| || ||| | ||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |||| | |||||||||||||||| ||    
T  11774476 agttacaccataacagggctcctgttcttggttgttccctctcgggaactctccaattttcacccaaaatcctcgtttatgatcccctttgacccaagtt 11774377  T
Q  358 cgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaat 437  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||||||||||| || |||||| |||||||||||||||    
T  11774376 cgtttccaaaacttgtacattagtttatatacatcaaaagacaatcaaaacaacgacaaacatgaaatcataacatcaat 11774297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 511 - 719
Target Start/End: Complemental strand, 29741904 - 29741691
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaat--- 607  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||| ||| | |||||||||| ||||||||||||||||||||||| |||||||       
T  29741904 aaacaaccacaccaattcaaacccaa-caacatacaaacataaacaaacatttaagaagtgaattcaaacatgtttcaacaacaatcacacaccaattca 29741806  T
Q  608 tcacgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaac---aactatgaagtttaagcacataacacaacaatttcatgaagt 704  Q
    ||| ||||||||||||||||| ||||| |||||||||  ||| ||||||||||||   || |||||||||||||| | ||| |  |||||||||||||||    
T  29741805 tcatgatttacactcaaataatcaaaattcatcaaaacaactcaacaacaacaacaataattatgaagtttaagctcttaagatgacaatttcatgaagt 29741706  T
Q  705 ttatcatactcacaa 719  Q
    |||||||||||||||    
T  29741705 ttatcatactcacaa 29741691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 566 - 732
Target Start/End: Complemental strand, 8324140 - 8323971
Alignment:
Q  566 gaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaaataaacaaaaatcatcaaaatcactta---acaacaacaac 662  Q
    |||||||||| ||||||||||||||||||||||||||   ||||  ||||||||||| | |||   |||||||||||||  |||||   |||||||||||    
T  8324140 gaagtgaattcaaacatgtttcaacaacaatcactcattgattcgtgatttacactctattaatacaaaatcatcaaaacaacttattaacaacaacaac 8324041  T
Q  663 aactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttgaatt 732  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||    
T  8324040 aactatgaagtttaagcacataacacaacaatttcctgaagtttatcttacccacaaattcacatgaatt 8323971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 510 - 685
Target Start/End: Original strand, 16094663 - 16094837
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    |||||||| |||||||||||||||||| ||||||||||||||  | ||  ||| ||||||||||||| |||||||||||| |  ||||||||| ||||||    
T  16094663 caaacaactacaccaattcaaaccccaccaacatacaaacatgtataaccatttatgaagtgaatttgaacatgtttcaatagtaatcactcatcaattc 16094762  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataa 685  Q
    | | |||||||| || ||| | |||||||||||||  ||||| || |||||||||||||||| |||||||||||||    
T  16094763 atggtttacacttaattaagcgaaaatcatcaaaacaacttatcaccaacaacaactatgaa-tttaagcacataa 16094837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 512 - 682
Target Start/End: Original strand, 20148544 - 20148713
Alignment:
Q  512 aacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcac 611  Q
    |||||||||||||||||||| |||| || |||||||||||| | |   ||| |||||||||||||||||||||| |||||| ||||||||  |||||||     
T  20148544 aacaaccacaccaattcaaatcccaacagcatacaaacatatatactcatttatgaagtgaatttaaacatgttccaacaataatcactcgtcaattcat 20148643  T
Q  612 gatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcaca 682  Q
    | |||||||| || ||| ||||||||| ||||   ||||| || |||||||||||||||| ||||||||||    
T  20148644 ggtttacacttaattaagcaaaaatcaccaaagcaacttatcaccaacaacaactatgaa-tttaagcaca 20148713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 244 - 438
Target Start/End: Original strand, 23386474 - 23386668
Alignment:
Q  244 aactcgccacaacgagttacaccagaataggtccc-ctattcttggttgttccctctcgagaactctccaa-ttttcaccaaaaatccttgtttttaatc 341  Q
    |||||||||||| ||||||||||| || ||||| | || || ||||||||||||||||| ||||| ||||| |||||||| |||||||   ||||| |||    
T  23386474 aactcgccacaatgagttacaccataacaggtcacactgtt-ttggttgttccctctcgggaact-tccaatttttcacctaaaatccccatttttgatc 23386571  T
Q  342 ccctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    |||||   ||||||| ||  |||||| |||||||||||||||||| ||||||||||| | |||||| |||||| ||||| ||||||||||| |||||    
T  23386572 cccttgatcccaaatccgaccccaaaacttgtacattagtttataaacatcaaaagacattcaaaataacaacaaacatagaatcataacaccaatt 23386668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 259 - 444
Target Start/End: Complemental strand, 20421283 - 20421097
Alignment:
Q  259 gttacaccagaataggtcccctattcttggttgttccctctcgagaactctccaattttcaccaaaaatccttgtttttaatc-ccctttgacccaaatt 357  Q
    ||||||||| || |||  |||| ||||| |||||||||||||| ||||||||||||||| |   ||||||| ||||||| ||| |||||||| |||||||    
T  20421283 gttacaccataacaggaaccctgttcttcgttgttccctctcgggaactctccaattttaattcaaaatccctgtttttgatctccctttgatccaaatt 20421184  T
Q  358 cgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaattttcacc 444  Q
      ||||| || |||||  | ||||||||||||||||||||  ||||||| ||||||| || ||||||| | ||||||| ||||||||    
T  20421183 tattccccaaacttgtgtactagtttatatacatcaaaaggaaatcaaagcaacaacaaatatggaatgacaacatcatttttcacc 20421097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 566 - 732
Target Start/End: Complemental strand, 8327325 - 8327170
Alignment:
Q  566 gaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaac 665  Q
    |||||||||| |||||||||||||||| ||||||||| | ||||  ||||||||||| | |||  ||||||||||||||           ||||||||||    
T  8327325 gaagtgaattcaaacatgtttcaacaataatcactcatcgattcgtgatttacactctattaataaaaaatcatcaaaa-----------caacaacaac 8327237  T
Q  666 tatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttgaatt 732  Q
    ||||||||||||| |||||||| ||||||||| ||||||||| | ||| ||||||||||| ||||||    
T  8327236 tatgaagtttaagaacataacataacaatttcctgaagtttaccgtacccacaaattcacatgaatt 8327170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 510 - 610
Target Start/End: Original strand, 23099816 - 23099915
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||||||||||||||||||||||||||||||| ||||||  | ||| ||| ||||||||||||| ||||||||||||||| ||||||| | ||||||    
T  23099816 caaacaaccacaccaattcaaaccccatcaacatataaacatgta-aaacatttatgaagtgaatttgaacatgtttcaacaataatcacttatcaattc 23099914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 630 - 713
Target Start/End: Complemental strand, 3170349 - 3170266
Alignment:
Q  630 caaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatac 713  Q
    |||||||| ||||||  ||||| ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  3170349 caaaaatcctcaaaacaacttatcaacaacaacaactatgagttttaagcacataacacatcaatttcatgaagtttatcatac 3170266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 11775165 - 11775039
Alignment:
Q  90 aaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattct 189  Q
    ||||||||| |||||||| || ||||||| ||||  ||  | ||||| || ||||||||||| ||||||||  |||  |||||| |||||||| ||||||    
T  11775165 aaagtttcaaaatcacatctttcataaaatacggacaattaaccacatcacgacattcatcaaattaaacaaccaaatatcattaattcattctcattct 11775066  T
Q  190 atcatactaacatgaattcaaagcctc 216  Q
    |||||||||||||||||||||||||||    
T  11775065 atcatactaacatgaattcaaagcctc 11775039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 584 - 719
Target Start/End: Complemental strand, 29741282 - 29741141
Alignment:
Q  584 tttcaacaacaatcactcaccaattcacgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaac------aacaactatgaagtttaa 677  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||  | | |||||||||      ||||| ||||||||||||    
T  29741282 tttcaacaacaatcacacaccaattcatgatttacactcaaataatcaaaattcatcaaaacaattcaacaacaacaacagcaacaattatgaagtttaa 29741183  T
Q  678 gcacataacacaacaatttcatgaagtttatcatactcacaa 719  Q
    || | |||||  ||||||||||| ||| ||||| ||||||||    
T  29741182 gctcttaacatgacaatttcatgcagtgtatcacactcacaa 29741141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 510 - 685
Target Start/End: Original strand, 16196568 - 16196742
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    |||||||||||||  |||||||||||| ||||||| |||| || | ||  ||| |||||||||||||||| ||||| | |||| ||| ||||| ||||||    
T  16196568 caaacaaccacactgattcaaaccccaacaacatataaacttatataatcatttatgaagtgaatttaaatatgttcctacaataattactcatcaattc 16196667  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataa 685  Q
    | | ||||||||  | ||| |||||||||||||||  ||||| || |||||| ||||| | | |||||||||||||    
T  16196668 atggtttacacttgattaagcaaaaatcatcaaaacaacttatcaccaacaataactacgga-tttaagcacataa 16196742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 510 - 713
Target Start/End: Complemental strand, 17161426 - 17161226
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    |||||||| || ||||||||||||||||||||||| ||||||  | ||   || ||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  17161426 caaacaactacgccaattcaaaccccatcaacatataaacatgtataa---tttatgaa-tgaatttaaacatgttccaacaataatcactcatcaattc 17161331  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaa-atcacttaacaacaacaacaactatgaagtttaagcacat-aacacaacaatttcatgaagttta 707  Q
    |   || ||||| || ||| ||||||||| |||| |  ||||| || | |||||||||||||| ||||||||||| |||| | ||||| |||||||||||    
T  17161330 atcgttcacacttaattaagcaaaaatcaccaaacacaacttatcaccgacaacaactatgaa-tttaagcacataaacatatcaattccatgaagttta 17161232  T
Q  708 tcatac 713  Q
     |||||    
T  17161231 acatac 17161226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 651 - 732
Target Start/End: Complemental strand, 20910574 - 20910493
Alignment:
Q  651 aacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttgaatt 732  Q
    |||||||| |||||||||||  ||||||||||||||| | ||||||||||||||||||||||| || |||||||| ||||||    
T  20910574 aacaacaataacaactatgagttttaagcacataacatatcaatttcatgaagtttatcatacccataaattcacatgaatt 20910493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 16196053 - 16196153
Alignment:
Q  82 gaaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcatt 181  Q
    |||||| ||||||||||||||| | |||||||||||||||||  ||  | |||||  |||||||||| |||||||||||| || ||||||||||||||||    
T  16196053 gaaacgataaagtttcacaatcccgttttacataaaagacggacaattatccacaataagacattcaccatattaaacacccattcatcattgattcatt 16196152  T
Q  182 c 182  Q
    |    
T  16196153 c 16196153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 525 - 644
Target Start/End: Original strand, 16175156 - 16175275
Alignment:
Q  525 attcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaa 624  Q
    |||||||||||| ||||||||||||||  | ||  ||| |||||||||| ||||||||||| |||||| ||||||||| ||||||| | ||||||||  |    
T  16175156 attcaaaccccaacaacatacaaacatttataatcatttatgaagtgaaattaaacatgttccaacaataatcactcatcaattcatggtttacacttga 16175255  T
Q  625 ataaacaaaaatcatcaaaa 644  Q
     ||| ||||||| |||||||    
T  16175256 ttaagcaaaaatgatcaaaa 16175275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 20911696 - 20911563
Alignment:
Q  79 aaggaaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatca-tcattgatt 177  Q
    ||||||||| |||||||||| | |||||||| ||||||| |||||  | | | ||||| |  ||| ||||||||||||||||| |||||  ||||  |||    
T  20911696 aaggaaacgataaagtttcaaattcacatttcacataaa-gacggacatctagccacaacgtgaccttcatcatattaaacacccaatccctcatcaatt 20911598  T
Q  178 cattcacattctatcatactaacatgaattcaaag 212  Q
    ||||||||||| |||||||||||||||||||||||    
T  20911597 cattcacattcaatcatactaacatgaattcaaag 20911563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 656 - 719
Target Start/End: Complemental strand, 13761757 - 13761694
Alignment:
Q  656 caacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaa 719  Q
    |||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||| |||||    
T  13761757 caacaacaactatgaagtttaagctcttaacacaaccatttcatgaaatttatcatacccacaa 13761694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 3171704 - 3171590
Alignment:
Q  98 acaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattctatcatact 197  Q
    ||||||||||||||||||||||||||  ||| | |||||  | | |||| ||||| | |||||| ||||||| ||  |||| ||||||||| ||||||||    
T  3171704 acaatcacattttacataaaagacggacaactaaccacattatgccatttatcatttcaaacacccaatcattatcaattctttcacattcaatcatact 3171605  T
Q  198 aacatgaattcaaag 212  Q
    |||||||||| ||||    
T  3171604 aacatgaattgaaag 3171590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 20147595 - 20147684
Alignment:
Q  106 attttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattctatcata 195  Q
    ||||| ||||||||||||  ||| | ||||| |||||||||||||||||| ||||| ||||||| |||| |||||||  |||||||||||    
T  20147595 attttgcataaaagacggacaactatccacatcaagacattcatcatattgaacacccaatcattattggttcattcttattctatcata 20147684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 16196435 - 16196497
Alignment:
Q  376 attagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    ||||||| | ||||||||||||  ||||||||||||||| |||||| ||||||||||||||||    
T  16196435 attagttaacatacatcaaaaggcaatcaaaacaacaacaaacatgcaatcataacatcaatt 16196497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 6461215 - 6461080
Alignment:
Q  56 tcattatcaacaaataacactttaaggaaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatatt 155  Q
    |||| |||||||| || ||| | || |||||  ||| |||||||||||||||||| |||||| |||||  ||| | ||||| || |||  ||||||||||    
T  6461215 tcatcatcaacaattatcacctcaaagaaacaataacgtttcacaatcacattttgcataaa-gacggacaactaaccacatcatgactatcatcatatt 6461117  T
Q  156 aaacactcaatcatcattgattcattcacattctatc 192  Q
    |||||| ||| |||||||| |||||||  ||||||||    
T  6461116 aaacacccaaccatcattgtttcattcttattctatc 6461080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 9128408 - 9128350
Alignment:
Q  154 ttaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    |||||||| ||||||| | | |||||||||||||| | |||||||||||||||||||||    
T  9128408 ttaaacacccaatcattaataattcattcacattcaaacatactaacatgaattcaaag 9128350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 16093871 - 16093942
Alignment:
Q  141 gacattcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    ||||||||||||||||||||  ||||||| ||| ||| ||||  ||||||||||| || ||||||| |||||    
T  16093871 gacattcatcatattaaacatccaatcatgattaattaattcctattctatcatattagcatgaatacaaag 16093942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 17162289 - 17162235
Alignment:
Q  141 gacattcatcatattaaacactcaatcatcattgattcattcacattctatcata 195  Q
    ||||||||||||||||||| |  |||||||||| ||||||||  |||||||||||    
T  17162289 gacattcatcatattaaacccctaatcatcatttattcattcttattctatcata 17162235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 438
Target Start/End: Complemental strand, 8324314 - 8324245
Alignment:
Q  369 cttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    ||||||||||||||| || |||| |||||| | | |||||||| || ||| || ||||||||||||||||    
T  8324314 cttgtacattagtttgtaaacataaaaagacatttaaaacaaccacaaacttgaaatcataacatcaatt 8324245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 438
Target Start/End: Complemental strand, 8327513 - 8327444
Alignment:
Q  369 cttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    ||||||||||||||| || |||| |||||| | | |||||||| || ||| || ||||||||||||||||    
T  8327513 cttgtacattagtttgtaaacataaaaagacatttaaaacaaccacaaacttgaaatcataacatcaatt 8327444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 625
Target Start/End: Complemental strand, 13765432 - 13765379
Alignment:
Q  572 aatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaaa 625  Q
    |||| ||||||||||||||||||||||| | |||||||| ||||| ||| ||||    
T  13765432 aattcaaacatgtttcaacaacaatcacactccaattcatgatttccacccaaa 13765379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 13766516 - 13766479
Alignment:
Q  175 attcattcacattctatcatactaacatgaattcaaag 212  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  13766516 attcattcacattcaatcatactaacatgaattaaaag 13766479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 15010232 - 15010167
Alignment:
Q  141 gacattcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaat 206  Q
    ||||| ||||||||||||||| | ||||||||||||||||   ||||| ||||||  |||||||||    
T  15010232 gacatccatcatattaaacaccccatcatcattgattcatcatcattcaatcatataaacatgaat 15010167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 4e-71; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 510 - 732
Target Start/End: Original strand, 21654140 - 21654355
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    |||||||||||||||||| |||||||||||||||| ||||||          |||||||||||||| |||||||||||||||||||||||||||||||||    
T  21654140 caaacaaccacaccaatttaaaccccatcaacataaaaacat----------tcatgaagtgaattcaaacatgtttcaacaacaatcactcaccaattc 21654229  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcactt---aacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagttt 706  Q
    | ||||||||||||| ||| |||||||||||||||  ||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21654230 atgatttacactcaattaatcaaaaatcatcaaaacaacttaacaacaacaacaacaaccatgaagtttaagcacataacacaacaatttcatgaagttt 21654329  T
Q  707 atcatactcacaaattcacttgaatt 732  Q
    ||||||| ||||||||||||||||||    
T  21654330 atcatacccacaaattcacttgaatt 21654355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 513 - 725
Target Start/End: Original strand, 28774163 - 28774365
Alignment:
Q  513 acaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacg 612  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||| ||||||||||||||||||||||| || ||||||| |    
T  28774163 acaaccacaccaattcaaaccccatcaacatacaaacatc----------catgaagtgaattcaaacatgtttcaacaacaatcacacatcaattcatg 28774252  T
Q  613 atttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcata 712  Q
    |||||||||||| ||  |||||||||||||||  ||| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  28774253 atttacactcaactagtcaaaaatcatcaaaacaactcaacaataacaacaactatgaagtttaagctcttaacacaacaatttcatgaagtttatcata 28774352  T
Q  713 ctcacaaattcac 725  Q
    | ||||| |||||    
T  28774353 cccacaatttcac 28774365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 511 - 730
Target Start/End: Original strand, 18995168 - 18995386
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||||| |||||| || | ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||  ||||||||||    
T  18995168 aaacaaccacaccaattcaaactccatca-cacataaacataaacaaacattaatgaagtgaattcaaacatgtttcaacaacaatcatacaccaattca 18995266  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     || || |||| |||||  | |||||||||||||  ||| |||||||||||||||||||||||||||||   |||||||| || ||||||||||||||||    
T  18995267 tgaatttcacttaaatagtcgaaaatcatcaaaacaactcaacaacaacaacaactatgaagtttaagctattaacacaataaattcatgaagtttatca 18995366  T
Q  711 tactcacaaattcacttgaa 730  Q
    ||| ||||| ||||| ||||    
T  18995367 tacccacaatttcacatgaa 18995386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 17739971 - 17740093
Alignment:
Q  90 aaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattct 189  Q
    ||||||||| ||||||||||| ||||||||||||  ||| | ||| | || |||||||| |||||||||||||||||||||||||||||||||  |||||    
T  17739971 aaagtttcaaaatcacattttgcataaaagacggataactatccatatcatgacattcaacatattaaacactcaatcatcattgattcattcttattct 17740070  T
Q  190 atcatactaacatgaattcaaag 212  Q
    ||||||  | ||||||| |||||    
T  17740071 atcatatcatcatgaatacaaag 17740093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 34897958 - 34897835
Alignment:
Q  90 aaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattct 189  Q
    ||||||||  |||||||||| |  |||||||| |  ||| | |||||  ||||| |||||||||||||||||||||||||||| ||||||| |  |||||    
T  34897958 aaagtttcgaaatcacatttcatgtaaaagacagacaactatccacattaagacgttcatcatattaaacactcaatcatcatcgattcatccttattct 34897859  T
Q  190 atcatactaacatgaattcaaagc 213  Q
    ||||||  ||||||||||||||||    
T  34897858 atcatataaacatgaattcaaagc 34897835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 23154119 - 23153984
Alignment:
Q  56 tcattatcaacaaataacactttaaggaaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatatt 155  Q
    |||| |||||||| || ||| | || |||||  ||| ||||||||| |||||||| || ||| |||||  ||| | ||||| || | |||||||||||||    
T  23154119 tcatcatcaacaattatcacctcaaagaaacaataacgtttcacaaccacattttgcacaaa-gacggacaactaaccacatcatggcattcatcatatt 23154021  T
Q  156 aaacactcaatcatcattgattcattcacattctatc 192  Q
    |||||| ||||||| ||||||||||||  ||||||||    
T  23154020 aaacacccaatcataattgattcattcttattctatc 23153984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 23565376 - 23565241
Alignment:
Q  56 tcattatcaacaaataacactttaaggaaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatatt 155  Q
    |||| |||||||| || ||| | || |||||  ||| ||||||||| |||||||| || ||| |||||  ||| | ||||| || | |||||||||||||    
T  23565376 tcatcatcaacaattatcacctcaaagaaacaataacgtttcacaaccacattttgcacaaa-gacggacaactaaccacatcatggcattcatcatatt 23565278  T
Q  156 aaacactcaatcatcattgattcattcacattctatc 192  Q
    |||||| ||||||| ||||||||||||  ||||||||    
T  23565277 aaacacccaatcataattgattcattcttattctatc 23565241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 22577012 - 22577075
Alignment:
Q  144 attcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaatt 207  Q
    |||||| |||| |||||| ||| ||||||  |||||||||||||||||||||||| ||||||||    
T  22577012 attcattatatcaaacacccaaacatcatcaattcattcacattctatcatactagcatgaatt 22577075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 24280756 - 24280818
Alignment:
Q  150 catattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    ||||||| |||| ||||||||||  |||||||| ||||||||||||  |||||||||||||||    
T  24280756 catattagacacccaatcatcatcaattcattctcattctatcatataaacatgaattcaaag 24280818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 6e-67; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 511 - 732
Target Start/End: Original strand, 20407782 - 20408003
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| ||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  20407782 aaacaaccacaccaattcaaaccccattaacatacacacataaataaaaatttatgaagtgaattcaaacatatttcaacaacaatcactcaccaattca 20407881  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
      ||||||| |||| ||| ||||||||||||||| |||||| ||| |||||||||| |||||||||||| | |||  |||||||||| ||||| ||||||    
T  20407882 taatttacattcaattaatcaaaaatcatcaaaaccacttatcaagaacaacaactttgaagtttaagctcttaaatcaacaatttcgtgaagattatca 20407981  T
Q  711 tactcacaaattcacttgaatt 732  Q
    ||| ||||||||||||||||||    
T  20407982 tacccacaaattcacttgaatt 20408003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 564 - 732
Target Start/End: Original strand, 21719667 - 21719835
Alignment:
Q  564 atgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaaca 663  Q
    |||||||| ||| || | ||||||||||||||| |||||||| |||| ||||||||||||| ||| ||||||||| |||||  ||||| |||||||||||    
T  21719667 atgaagtgcattcaatcgtgtttcaacaacaattactcaccatttcatgatttacactcaattaatcaaaaatcaccaaaacaacttatcaacaacaaca 21719766  T
Q  664 actatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttgaatt 732  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  21719767 actatgaagtttaagcacataacacaacaatttcatgaagtttatcatacctacaaattcacatgaatt 21719835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 511 - 730
Target Start/End: Original strand, 21423197 - 21423416
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||| ||| |||||||||||| |||||||||||| ||||||||   ||||||||||    
T  21423197 aaacaaccacaccaattcaaaccccatcaacacataaacataaacaaacattaatgaagtgaattcaaacatgtttcaccaacaatcttacaccaattca 21423296  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     || || ||||||||||  |||||||||| ||||  ||| |||||||||||||||||||||||||| |     ||||||||||| |||| ||||||||||    
T  21423297 tgaatttcactcaaatagtcaaaaatcatgaaaacaactcaacaacaacaacaactatgaagtttaggttatcaacacaacaatctcataaagtttatca 21423396  T
Q  711 tactcacaaattcacttgaa 730  Q
    ||| ||||| ||||| ||||    
T  21423397 tacccacaatttcacatgaa 21423416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 554 - 732
Target Start/End: Original strand, 22615139 - 22615317
Alignment:
Q  554 acaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaaataaacaaaaatcatcaaaatcacttaac 653  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||| || || |||| ||||  |||||      
T  22615139 acaaacattcatgaagtgaattcaaacatgtttcaacaacaatcactcgccaattcatgatttacactcaattaatcataagtcattaaaacaacttata 22615238  T
Q  654 aacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttgaatt 732  Q
    ||||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||||  ||||  |||||||||||    
T  22615239 aacaataacaactatgaagtttaagcacaaaacactgcaatttcatgaagtttatcataccaacaatatcacttgaatt 22615317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 511 - 730
Target Start/End: Complemental strand, 18622116 - 18621898
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||||| ||||| ||| || | |||| |||||||||||||| ||||| |||||| || | |||||||||||||||||   ||||| |||    
T  18622116 aaacaaccacaccaatttaaaccacattaatacacaaccataaacaaatattaatgaaatgaattcaa-cttgtttcaacaacaatcataaaccaaatca 18622018  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     | |||||| |||||||| |||||||||||||||  ||| |||| ||||||||||||||| ||||||||   ||||||||||||||| ||||||| ||||    
T  18622017 tggtttacattcaaataatcaaaaatcatcaaaacaactcaacaccaacaacaactatgaggtttaagctattaacacaacaatttcttgaagttcatca 18621918  T
Q  711 tactcacaaattcacttgaa 730  Q
    ||| || || ||||| ||||    
T  18621917 tacccataatttcacatgaa 18621898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 339 - 439
Target Start/End: Original strand, 20407610 - 20407710
Alignment:
Q  339 atcccctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    |||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||| | ||||||||||||| ||| ||||||||||||| |||||    
T  20407610 atcccctttgacccaaattcgtccccaaatcttatacattagtttataaacatcaaaagacattcaaaacaacaacaaacttggaatcataacaccaatt 20407709  T
Q  439 t 439  Q
    |    
T  20407710 t 20407710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 656 - 730
Target Start/End: Complemental strand, 23475907 - 23475833
Alignment:
Q  656 caacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttgaa 730  Q
    ||||||||||||||||||||| || | |||||||||||||||||||| |||||||||| ||||| ||||| ||||    
T  23475907 caacaacaactatgaagtttaggctcttaacacaacaatttcatgaattttatcatacccacaatttcacatgaa 23475833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 618 - 730
Target Start/End: Original strand, 21978628 - 21978740
Alignment:
Q  618 cactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcac 717  Q
    ||||||||||  |||||||||| ||||  ||| ||||||| |||||| |||||||||||||    ||||||||||  ||||||||||||||||||| |||    
T  21978628 cactcaaatagtcaaaaatcatgaaaactactaaacaacagcaacaattatgaagtttaagatattaacacaacatattcatgaagtttatcatacccac 21978727  T
Q  718 aaattcacttgaa 730  Q
    || ||||| ||||    
T  21978728 aatttcacatgaa 21978740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 654 - 712
Target Start/End: Original strand, 21402675 - 21402733
Alignment:
Q  654 aacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcata 712  Q
    |||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||    
T  21402675 aacaacaacaaccatgagttttaagcacataacacatcaatttcatgaagtttatcata 21402733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 9167383 - 9167291
Alignment:
Q  90 aaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattc 182  Q
    ||||||||| |||||||||| | |||||||||||  ||| | |  || || |||||||||||||||||||||||||||| | |||||||||||    
T  9167383 aaagtttcaaaatcacatttcatataaaagacggacaactatctgcatcatgacattcatcatattaaacactcaatcaactttgattcattc 9167291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 323 - 396
Target Start/End: Original strand, 22614969 - 22615043
Alignment:
Q  323 aaaatccttgtttttaatcccctttgacccaaattcgttcccaaagcttgtacattagtttata-tacatcaaaa 396  Q
    ||||||| | ||||| ||||||||||||||||||||||  ||||| ||| |||||||||||||| ||||||||||    
T  22614969 aaaatccctatttttgatcccctttgacccaaattcgtcaccaaaacttatacattagtttatattacatcaaaa 22615043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 511 - 554
Target Start/End: Original strand, 21719602 - 21719645
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaa 554  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||    
T  21719602 aaacaactacaccaattcaaaccccaacaacattcaaacataaa 21719645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 21422155 - 21422217
Alignment:
Q  150 catattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    ||||||| |||| || |||||||  |||||||| ||||||||||||  |||||||||||||||    
T  21422155 catattagacacccagtcatcatcaattcattctcattctatcatataaacatgaattcaaag 21422217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 22614295 - 22614340
Alignment:
Q  166 tcatcattgattcattcacattctatcatactaacatgaattcaaa 211  Q
    |||||||  ||| ||||||| |||||||||||||||||||||||||    
T  22614295 tcatcatcaattaattcacaatctatcatactaacatgaattcaaa 22614340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 22615037 - 22615074
Alignment:
Q  401 atcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  22615037 atcaaaacaacaacaaacatggaatcataatatcaatt 22615074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 5e-64; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 532 - 732
Target Start/End: Original strand, 24194145 - 24194345
Alignment:
Q  532 ccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaaataaaca 631  Q
    |||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||||||| |||  |    
T  24194145 ccccatgaacatacaaacataaacaaacatccatgaagtgaattcaaacatgtttcaacaacaatcactcacaaattcatgattcacactcaattaataa 24194244  T
Q  632 aaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttgaat 731  Q
    |||||||||||||  || || ||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  24194245 aaaatcatcaaaacgacatatcaacaacaacaactatgaagtttaaactcttaatacaacaatttcatgaagtttatcatacccacaaattcacttgaat 24194344  T
Q  732 t 732  Q
    |    
T  24194345 t 24194345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 510 - 732
Target Start/End: Original strand, 17364097 - 17364319
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||||||||| || ||||||||||||||||| |||||||||| ||| ||| || |||||||||||| ||||||||||||| ||||||||||||||||    
T  17364097 caaacaaccacacaaagtcaaaccccatcaacatgcaaacataaataaacatttattaagtgaatttaagcatgtttcaacaataatcactcaccaattc 17364196  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatc 709  Q
    |  |  |||||| |  |||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||    
T  17364197 attaaatacacttagttaaacaaaaatcatcaaaacaacttatcaacaacaacaactatgaattttaagcacataacatatcaatttcatgaagtttatc 17364296  T
Q  710 atactcacaaattcacttgaatt 732  Q
    || | || |||||||| ||||||    
T  17364297 atgcccataaattcacatgaatt 17364319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 511 - 730
Target Start/End: Complemental strand, 19316642 - 19316424
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||| |||||| | ||||||| |||||| ||||||||||||| | |||||||||||    
T  19316642 aaacaaccacaccaattcaaacccaa-caacatataaacataaacaaacattcataatgtgaattcaaacatctttcaacaacaattaatcaccaattca 19316544  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     |||||| |||||||||   ||||||||||||||| ||| |||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||    
T  19316543 tgatttatactcaaatagttaaaaatcatcaaaataactcaacaacaaaaacaattatgaagtttaagctcttaacacaacaatttcatgaagtttatca 19316444  T
Q  711 tactcacaaattcacttgaa 730  Q
    ||| || || ||||| ||||    
T  19316443 tacccaaaatttcacatgaa 19316424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 511 - 732
Target Start/End: Original strand, 17169532 - 17169751
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  17169532 aaacaactacaccaatttaaaccccatcaacatacaaacataaaccaacatttatgaagtgaattcaaacatgtttcaacaacaatcactcaccaattca 17169631  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     ||||||||||  | ||| |||||||| || |||  ||||| ||| |||||| | |||||||||||||  | ||||||||||||| |||||||||||||     
T  17169632 tgatttacact--attaatcaaaaatcttctaaacaacttatcaaaaacaactaatatgaagtttaagatcttaacacaacaattacatgaagtttatcg 17169729  T
Q  711 tactcacaaattcacttgaatt 732  Q
    ||| || |||||||||||||||    
T  17169730 tacacataaattcacttgaatt 17169751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 511 - 732
Target Start/End: Original strand, 26727652 - 26727868
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||||||||||| |||| |||||||||||||   ||| ||| || ||||||||| |||  |||||||||||||||||||||||||||||    
T  26727652 aaacaaccacaccaattcaaacctcatccacatacaaacatatgtaaacatttattaagtgaattcaaa--tgtttcaacaacaatcactcaccaattca 26727749  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     ||||||||||| | ||| |||||||||||| ||  ||||   | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26727750 tgatttacactctagtaagcaaaaatcatcataacaactt---atcaacaacaactatgaagtttaaacacataacacaacaatttcatgaagtttatca 26727846  T
Q  711 tactcacaaattcacttgaatt 732  Q
    ||  ||||||||||| ||||||    
T  26727847 tatccacaaattcacatgaatt 26727868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 511 - 730
Target Start/End: Original strand, 19268373 - 19268595
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||||||||| |||||||||| | ||||||||| | | ||| |||||||||||| ||||| ||||||||||||||||  || |||||||    
T  19268373 aaacaaccacaccaattcaaaacccatcaacacataaacataaatagacattaatgaagtgaattcaaacacgtttcaacaacaatcatacatcaattca 19268472  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcact---taacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagttta 707  Q
     || || ||||||||||  |||||||||| ||||  |||    ||||||||||||||||||||||||||||    |||||| |||| |||||||  ||||    
T  19268473 tgaatttcactcaaatagtcaaaaatcatgaaaacaactcaacaacaacaacaacaactatgaagtttaagatattaacaccacaaattcatgacattta 19268572  T
Q  708 tcatactcacaaattcacttgaa 730  Q
    |||||| ||||| ||||| ||||    
T  19268573 tcatacccacaatttcacatgaa 19268595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 511 - 624
Target Start/End: Original strand, 22468511 - 22468624
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| | |||| ||||||||||||| || ||| ||| |||||||||    
T  22468511 aaacaaccacaccaattcaaatcccatcaacatacaaacataaacaaacatttatgaaataaattcaaacatgtttcaagaataatgactgaccaattca 22468610  T
Q  611 cgatttacactcaa 624  Q
     |||| ||||||||    
T  22468611 tgattcacactcaa 22468624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 564 - 712
Target Start/End: Original strand, 26867849 - 26867997
Alignment:
Q  564 atgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaaca 663  Q
    ||||||||||||||||| |||| |||||| ||||||||| ||||||| | |||||||| || ||| |||||| ||||||||  ||||| ||  |||||||    
T  26867849 atgaagtgaatttaaacttgttccaacaataatcactcatcaattcatggtttacacttaattaagcaaaaaacatcaaaacaacttatcacaaacaaca 26867948  T
Q  664 actatgaagtttaagcacat-aacacaacaatttcatgaagtttatcata 712  Q
    ||||||||  |||||||||| |||| | ||||| ||||||||||| ||||    
T  26867949 actatgaa-attaagcacataaacatatcaattccatgaagtttaacata 26867997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 256 - 438
Target Start/End: Original strand, 26727392 - 26727579
Alignment:
Q  256 cgagttacaccagaataggtcccctattcttggttgttccctctcgagaactctccaattttca-ccaaaaatccttgtttttaatcccctttgacccaa 354  Q
    |||||||||||| || | |||||||||||||||   |||||||||| |||| | ||| |||||| |||||||||| ||||||| |||||||||||||| |    
T  26727392 cgagttacaccataacatgtcccctattcttgggctttccctctcgggaacccaccacttttcacccaaaaatcc-tgtttttgatcccctttgaccc-a 26727489  T
Q  355 attcgttcccaaagcttgtacattagtt------tatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    ||| || ||| || ||||| ||||||||      |||||| ||||||||  |||| |||||||||| || ||||||||||| ||||||||    
T  26727490 atttgtcccctaaacttgttcattagttaatatatatatatatcaaaaggcaatcgaaacaacaacaaatatggaatcatatcatcaatt 26727579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 510 - 621
Target Start/End: Original strand, 13456898 - 13457009
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||||||||| ||||||||||||| |||||||||| | ||   ||  ||| |||||||||||||||||||||| |||||| ||||||||| |||||     
T  13456898 caaacaaccacacaaattcaaaccccaacaacatacaagcttatgtaatcatttatgaagtgaatttaaacatgttccaacaataatcactcatcaattg 13456997  T
Q  610 acgatttacact 621  Q
    | | ||||||||    
T  13456998 atggtttacact 13457009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 510 - 651
Target Start/End: Original strand, 26132609 - 26132749
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    |||||||| ||| ||||||||| || | ||||||| ||||||| | ||  ||| || || |||||||| |||||||||||||| ||||||||||||||||    
T  26132609 caaacaacaacaacaattcaaatccaa-caacataaaaacatatataatcatttatcaaatgaatttagacatgtttcaacaataatcactcaccaattc 26132707  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcactta 651  Q
    | |||||||||| || | | |||| |||| |||||| |||||    
T  26132708 atgatttacacttaattgagcaaacatcaccaaaataactta 26132749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 244 - 414
Target Start/End: Original strand, 17363835 - 17364003
Alignment:
Q  244 aactcgccacaacgagttacaccagaataggtcccctattcttggttgttccctctcgagaactctccaattttcacca-aaaatccttgtttttaatcc 342  Q
    |||||||| |||||||||||||||| ||||   |||| ||||||| | |||||||||| |||| |  || ||||||||  |||||||  |||||| ||||    
T  17363835 aactcgcc-caacgagttacaccaggatagaaaccctgttcttgggttttccctctcgggaacccatca-ttttcaccccaaaatccc-gtttttgatcc 17363931  T
Q  343 cctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaac 414  Q
    |||| |||||| |||||| ||| || |||||  ||||||| | ||||||||||||  |||||||||||||||    
T  17363932 ccttcgacccatattcgtcccccaaacttgtttattagttaacatacatcaaaaggcaatcaaaacaacaac 17364003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 22468396 - 22468472
Alignment:
Q  362 cccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    |||||| |||||||||||||||||| ||||||||||  | | ||||| ||||| ||| | ||||||||||| |||||    
T  22468396 cccaaaacttgtacattagtttataaacatcaaaaggcatttaaaaccacaacaaactttgaatcataacaccaatt 22468472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 19267319 - 19267390
Alignment:
Q  141 gacattcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    |||| |||||| ||||||||| ||||| | ||  |||||||||||||  ||| |||||||||||||||||||    
T  19267319 gacaatcatcaaattaaacacccaatccttatcaattcattcacattaaatcttactaacatgaattcaaag 19267390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 329
Target Start/End: Original strand, 19268102 - 19268192
Alignment:
Q  239 tgggcaactcgccacaacgagttacaccagaataggtc-ccctattcttggttgttccctctcgagaactctccaattttcaccaaaaatcc 329  Q
    ||||||||| |||| | ||||||||||||||| ||||| |||| || ||| |||||||||||||  ||||| ||| |||||||| |||||||    
T  19268102 tgggcaactagcca-agcgagttacaccagaacaggtcaccctgttattgattgttccctctcggaaactccccatttttcacccaaaatcc 19268192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 628 - 730
Target Start/End: Original strand, 31479591 - 31479693
Alignment:
Q  628 aacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcactt 727  Q
    ||||||||||| || ||  |||||  || ||||||||| ||||  |||||||||||||  |  ||||||||||||||||||||||| || || ||||| |    
T  31479591 aacaaaaatcaccataacaacttattaataacaacaaccatgagttttaagcacataattcgtcaatttcatgaagtttatcatacccataatttcacat 31479690  T
Q  728 gaa 730  Q
    |||    
T  31479691 gaa 31479693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 543 - 732
Target Start/End: Original strand, 2939 - 3125
Alignment:
Q  543 tacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaaataaacaaaaatcatcaa 642  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| |||||||  | |||||||||| ||    
T  2939 tacaaacataaacaaacattcatgaagtgaatttaaacatgtttcaacaacaaccactcacaaattcatgatttaaactcaaactagcaaaaatcataaa 3038  T
Q  643 aatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttgaatt 732  Q
    ||||||||   |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  3039 aatcactt---aacagcaacaactatgaagtttaagcacataatacaacaatttcatgaagtttattatactcataaattcacttgaatt 3125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 120; Significance: 5e-61; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 511 - 732
Target Start/End: Original strand, 1639 - 1857
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||||||||| ||||| |||||||||||| | ||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  1639 aaacaaccacaccaattcaaatcccataaacatacaaacacatacaaacatttatgaagtgaatttaaacaagtttcaacaacaatcactcacaaattca 1738  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
      | |||||||||| |||  ||||||||||||||| ||||   |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||    
T  1739 taacttacactcaattaataaaaaatcatcaaaataactt---aacaacaaaaactatgaagtttaagctcttaacacaacaatttcatgaagtttatca 1835  T
Q  711 tactcacaaattcacttgaatt 732  Q
    ||| ||||  ||||| ||||||    
T  1836 tacccacatgttcacatgaatt 1857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 257 - 439
Target Start/End: Original strand, 1385 - 1568
Alignment:
Q  257 gagttacaccagaataggtc-ccctattcttggttgttccctctcgagaactctccaattttcaccaaaaatccttgtttttaatcccctttgacccaaa 355  Q
    |||||||||||||| ||||| |||| || ||||| ||||||||||| ||||| ||||||||||||| ||||||     |||| ||||||||   ||||||    
T  1385 gagttacaccagaacaggtcaccctgtt-ttggtcgttccctctcgggaact-tccaattttcacctaaaatcgccaattttgatccccttgaccccaaa 1482  T
Q  356 ttcgttcccaaagcttgtacattagtttatatacatcaaaa--gataatcaaaacaacaaccaacatggaatcataacatcaattt 439  Q
    |||| ||||||| |||||||| ||||||||| |||||||||  || | ||||||||||||| ||||| ||||||||||| ||||||    
T  1483 ttcgatcccaaaacttgtacactagtttataaacatcaaaaaagacattcaaaacaacaacaaacatcgaatcataacaccaattt 1568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 105; Significance: 5e-52; HSPs: 5)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 288 - 444
Target Start/End: Complemental strand, 206220 - 206065
Alignment:
Q  288 gttgttccctctcgagaactctccaattttcaccaaaaatccttgtttttaatcccctttgacccaaattcgttcccaaagcttgtacattagtttatat 387  Q
    |||||||||||||| ||||||||| ||||| ||| |||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  206220 gttgttccctctcgggaactctccgatttt-accgaaaatttctgtttttgatcccctttgacccaaattcgttcccaaaacttgtacattagtttttat 206122  T
Q  388 acatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaattttcacc 444  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  206121 acatcaaaagataatcaaaccaacaacaaacatggaatcataacatcaattttcacc 206065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 594 - 732
Target Start/End: Complemental strand, 204920 - 204779
Alignment:
Q  594 aatcactcaccaattcacgatttacactcaaataaacaaaaatcatcaaaa---tcacttaacaacaacaacaactatgaagtttaagcacataacacaa 690  Q
    ||||||||| ||||| | |||||||||||| |||| |||||||||| ||||   |||||||||||||||||||| |||||||||||| || |||||||||    
T  204920 aatcactcatcaatttatgatttacactcatataagcaaaaatcataaaaaaaatcacttaacaacaacaacaattatgaagtttaaacatataacacaa 204821  T
Q  691 caatttcatgaagtttatcatactcacaaattcacttgaatt 732  Q
    ||||||||||||||||||||  | |||||||||||| |||||    
T  204820 caatttcatgaagtttatcaagcccacaaattcactcgaatt 204779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 510 - 591
Target Start/End: Complemental strand, 205999 - 205918
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaaca 591  Q
    |||| ||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  205999 caaataaccacaccaactcaaacaccaccaacatacaaacataaacaaaaattcatgaagtgaatttaaacatgttttaaca 205918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 510 - 591
Target Start/End: Complemental strand, 210969 - 210888
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaaca 591  Q
    |||| ||||||||||| |||||| |||| |||||||||| ||||||||| ||| ||||||||| ||||||||||||| ||||    
T  210969 caaataaccacaccaactcaaactccattaacatacaaatataaacaaaaattgatgaagtgattttaaacatgttttaaca 210888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 211147 - 211062
Alignment:
Q  282 ttcttggttgttccctctcgagaactctccaattttcaccaaaaatccttgtttttaatcccctttgacccaaattcgttcccaaa 367  Q
    |||| ||||||||||||||  ||||||||| ||||| ||| |||||    |||||| || |||||||||||||||| |||||||||    
T  211147 ttctcggttgttccctctcaggaactctccgatttttaccgaaaatttccgtttttgattccctttgacccaaatttgttcccaaa 211062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 2e-51; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 511 - 732
Target Start/End: Complemental strand, 14566744 - 14566539
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||||| |||| |||| ||||||||||||||| |||||             ||||||||||| ||||||||||||| |||||||    
T  14566744 aaacaaccacaccaattcaaactccattaacacacaaacataaacaaacattca-------------aacatgtttcatcaacaatcactcatcaattca 14566658  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     ||||||||||||| ||| ||||| || ||||||| ||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||    
T  14566657 tgatttacactcaattaatcaaaagtcttcaaaataacttaacaacaacaac---tatgaagtttaagctcataacacaacaatttcatgaagtttatca 14566561  T
Q  711 tactcacaaattcacttgaatt 732  Q
    ||| ||||||||||| ||||||    
T  14566560 tacccacaaattcacatgaatt 14566539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 511 - 730
Target Start/End: Complemental strand, 19725573 - 19725361
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||| | | |  |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||    
T  19725573 aaacaaccacaccaattcaatctc-acgaacatacaaacataaacaaacattaatgaagtgaattcaaacatgtttcaacaacaatcaatcaccaattca 19725475  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     |||||||| |||||||  |||||||||||||||| ||| ||||||||   ||||||| |||||||||| |||    ||||||||||||||| |||||||    
T  19725474 tgatttacagtcaaatagtcaaaaatcatcaaaataactcaacaacaa---caactataaagtttaagctcat---gcaacaatttcatgaaatttatca 19725381  T
Q  711 tactcacaaattcacttgaa 730  Q
    ||||||||| ||||| ||||    
T  19725380 tactcacaatttcacatgaa 19725361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 511 - 725
Target Start/End: Complemental strand, 19977503 - 19977284
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||  |||||||||||||| ||||||||||| |  | ||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  19977503 aaacaaccacagtaattcaaaccccattaacatacaaacgtgtataaaaatttatgaagtgaatttaaacatgtttcaacaacaatgactcaccaattca 19977404  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcac----ttaacaacaacaacaactatgaagtttaagcacataacac-aacaatttcatgaagtt 705  Q
     || |||||| ||| |||| | |||||| |||||  ||    | |||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  19977403 tgacttacacccaattaaatacaaatcaccaaaacaacattatcaacaacaacaacaactatgaagttgaagcatataacacaaacaatttcatgaagtt 19977304  T
Q  706 tatcatactcacaaattcac 725  Q
    |||||||| |||||||||||    
T  19977303 tatcatacccacaaattcac 19977284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 511 - 730
Target Start/End: Original strand, 10974827 - 10975046
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||| ||| |||||||||||||||| | ||||||||||||| ||| |||||||||||| ||||| |||||||||| |||||  || |||||||    
T  10974827 aaacaaccacatcaactcaaaccccatcaacacataaacataaacaaacattaatgaagtgaattcaaacaagtttcaacaagaatcatacatcaattca 10974926  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     || || |||||||||||  ||||||||| ||||  ||| ||||||||||| ||||||||| |||||||    ||||||||||| |||||||||||||||    
T  10974927 tgaatttcactcaaataataaaaaatcattaaaacaactcaacaacaacaaaaactatgaaatttaagctaccaacacaacaatctcatgaagtttatca 10975026  T
Q  711 tactcacaaattcacttgaa 730  Q
    ||| | ||| ||||| ||||    
T  10975027 tacccgcaatttcacatgaa 10975046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 510 - 664
Target Start/End: Original strand, 14354227 - 14354381
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| | ||| ||| || ||||||||| |||||||||||||||| |||||||||  |||||    
T  14354227 caaacaaccacacaaattcaaaccccatcaacagacaaacatatataaacatttataaagtgaattcaaacatgtttcaacaagaatcactcattaattc 14354326  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaa 664  Q
    | ||||||||||||| ||| |||||||||||||||  ||||| ||||||||||||    
T  14354327 atgatttacactcaattaatcaaaaatcatcaaaacaacttatcaacaacaacaa 14354381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 510 - 716
Target Start/End: Complemental strand, 23294462 - 23294256
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||| ||||| |||||||| || ||||||||||||||||    ||| ||  ||||||||||||||||||| ||| ||||| ||||||| | ||||||    
T  23294462 caaacaatcacactaattcaaaaccaatcaacatacaaacatgtgtaaacatctatgaagtgaatttaaacatattttaacaataatcacttatcaattc 23294363  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatc 709  Q
    |  ||||| |||||||||| | |||||||||||||  ||||| || |||||||||||||||| |||| |||||||||| ||||| ||||||||||||| |    
T  23294362 ataatttagactcaaataagctaaaatcatcaaaacaacttatcagcaacaacaactatgaattttatgcacataacataacaaattcatgaagtttaac 23294263  T
Q  710 atactca 716  Q
    |||||||    
T  23294262 atactca 23294256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 511 - 623
Target Start/End: Original strand, 23299586 - 23299698
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||    
T  23299586 aaacaaccacaccaattcaaactccatcaacatacaaacataaataaacatttatgaagtgaatttaaacatgtttcaacaataatcactcatcaattca 23299685  T
Q  611 cgatttacactca 623  Q
     ||||||||||||    
T  23299686 tgatttacactca 23299698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 550 - 730
Target Start/End: Original strand, 19980203 - 19980383
Alignment:
Q  550 ataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaaataaacaaaaatcatcaaaatcact 649  Q
    ||||||||| ||| |||| ||||||| |||||| ||||||||||||||| ||||||||||| |||| |||||||| ||| ||||||   ||||||  | |    
T  19980203 ataaacaaacattaatgatgtgaattcaaacatatttcaacaacaatcaatcaccaattcatgattcacactcaattaatcaaaaaaattcaaaacaagt 19980302  T
Q  650 taacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttgaa 730  Q
     ||| ||||||||||| |||  |||| ||| | ||||||||||||||||||||||||||||||| ||| | ||||| ||||    
T  19980303 caacgacaacaacaaccatggtgtttgagctcttaacacaacaatttcatgaagtttatcatacccacgatttcacatgaa 19980383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 510 - 713
Target Start/End: Complemental strand, 12463870 - 12463667
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||| |||||||||||||||   ||||||||||||||||||  | ||  ||| |||||||| ||||||||||||| ||| || ||||| ||| ||||||    
T  12463870 caaaccaccacaccaattcaacatccatcaacatacaaacatgtaaaataatttatgaagtgcatttaaacatgttccaagaataatcattcatcaattc 12463771  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatc 709  Q
    | | |||||||| |||| | ||||||||| |||||  ||||| ||  ||||||||||||||| ||||||| ||||||| | ||||| | ||||||||| |    
T  12463770 atggtttacacttaaatgagcaaaaatcaccaaaacaacttatcactaacaacaactatgaattttaagcccataacatatcaattccttgaagtttaac 12463671  T
Q  710 atac 713  Q
    ||||    
T  12463670 atac 12463667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 311 - 438
Target Start/End: Original strand, 14354028 - 14354155
Alignment:
Q  311 caattttcaccaaaaatccttgtttttaatcccctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaa 410  Q
    ||||||||| | |||| ||| | |||| |||||||||||||||||||||| |||||| ||||| ||||| |||| ||||||||||||  |||||||||||    
T  14354028 caattttcatccaaaaacctcgattttgatcccctttgacccaaattcgtccccaaaacttgtgcattaatttacatacatcaaaaggcaatcaaaacaa 14354127  T
Q  411 caaccaacatggaatcataacatcaatt 438  Q
    |||| | |||||||||||||||||||||    
T  14354128 caactatcatggaatcataacatcaatt 14354155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 333 - 440
Target Start/End: Complemental strand, 19977681 - 19977574
Alignment:
Q  333 tttttaatcccctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataaca 432  Q
    |||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||||| ||||   ||||| ||||||||| |||||||||||||||||    
T  19977681 tttttaatccactttgacccatattcgtccccaaaacttgtacattagtttatatacataaaaatgcaatcataacaacaacaaacatggaatcataaca 19977582  T
Q  433 tcaatttt 440  Q
    ||||||||    
T  19977581 tcaatttt 19977574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 510 - 689
Target Start/End: Original strand, 12487672 - 12487848
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||||| ||||||||||||   |||||||||||||||||  | ||| ||| ||| ||||||||||||||| ||||||||| ||||||||| ||||||    
T  12487672 caaacaacctcaccaattcaaaattcatcaacatacaaacatgtataaacatttatgtagtgaatttaaacatatttcaacaataatcactcatcaattc 12487771  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacaca 689  Q
    |   || ||||| |||||| |||||||||||||||   | |   | || ||||||||||||| |||||||||||||||||    
T  12487772 atagttcacacttaaataagcaaaaatcatcaaaacagcct---atcaccaacaactatgaattttaagcacataacaca 12487848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 23294626 - 23294533
Alignment:
Q  343 cctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    |||||||||||||||||| |||||| |||||  ||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  23294626 cctttgacccaaattcgtccccaaa-cttgtttattagttaatatacatcaaaagataataaaaa-aacaacaaacatggaatcataacatcaatt 23294533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 23089990 - 23089888
Alignment:
Q  93 gtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattctatc 192  Q
    ||||||||| |||||||| ||||| | ||||  ||| | ||||| || ||||||||||||||||||||| ||| ||||||||||||||||  ||||||||    
T  23089990 gtttcacaaccacattttgcataagaaacggacaactaaccacatcatgacattcatcatattaaacacccaaccatcattgattcattcttattctatc 23089891  T
Q  193 ata 195  Q
    |||    
T  23089890 ata 23089888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 17913335 - 17913415
Alignment:
Q  95 ttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattga 175  Q
    |||||||||||||||| ||||||||| ||  ||| | ||||| || ||||||||||||||||||||| |||||||||||||    
T  17913335 ttcacaatcacattttgcataaaagatggacaactaaccacatcatgacattcatcatattaaacacccaatcatcattga 17913415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 23298617 - 23298729
Alignment:
Q  70 taacactttaaggaaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcat 169  Q
    |||||| | |||| |||| |||||||||| ||||||||||| ||||||||||||  ||| | ||||| || | |||||||  |||| || ||||||||||    
T  23298617 taacacatgaagggaacgataaagtttcaaaatcacattttgcataaaagacggacaactaaccacatcatggcattcattgtatttaatactcaatcat 23298716  T
Q  170 cattgattcattc 182  Q
    |||||||||||||    
T  23298717 cattgattcattc 23298729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 22544814 - 22544901
Alignment:
Q  93 gtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcat 180  Q
    |||||| ||||||||||| ||||||||||||  ||| | ||||| || || |||||||||||| |||||| |||||||||||||||||    
T  22544814 gtttcaaaatcacattttgcataaaagacggacaactaaccacatcatgatattcatcatattcaacactaaatcatcattgattcat 22544901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 12465628 - 12465574
Alignment:
Q  141 gacattcatcatattaaacactcaatcatcattgattcattcacattctatcata 195  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||    
T  12465628 gacattcatcatattaaacacccaatcatcattgattcattcttattctatcata 12465574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 334 - 438
Target Start/End: Original strand, 12487496 - 12487600
Alignment:
Q  334 ttttaatcccctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacat 433  Q
    |||| ||||||||||||||||||| || ||| || |||||  |||||||   ||| |||||||   ||| ||||||||||| ||||||||||||||||||    
T  12487496 ttttgatcccctttgacccaaatttgtcccccaaacttgtttattagttatcatatatcaaaatgcaatgaaaacaacaacaaacatggaatcataacat 12487595  T
Q  434 caatt 438  Q
    |||||    
T  12487596 caatt 12487600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 9520707 - 9520761
Alignment:
Q  141 gacattcatcatattaaacactcaatcatcattgattcattcacattctatcata 195  Q
    ||||||||||| ||||||||| ||||||||||||||||||||  |||||||||||    
T  9520707 gacattcatcaaattaaacacccaatcatcattgattcattcttattctatcata 9520761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 12486768 - 12486841
Alignment:
Q  141 gacattcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaagcc 214  Q
    ||||||||||||||||||||| | ||||||||||||||||||  ||||||| |||  | ||||||| |||||||    
T  12486768 gacattcatcatattaaacaccccatcatcattgattcattcttattctataatatcatcatgaatacaaagcc 12486841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 551
Target Start/End: Original strand, 23349707 - 23349748
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacat 551  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  23349707 caaacaaccacaccaattcaaaccccaacaacatacaaacat 23349748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 564 - 644
Target Start/End: Original strand, 23350242 - 23350322
Alignment:
Q  564 atgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaaataaacaaaaatcatcaaaa 644  Q
    ||||||||||||| ||||||||||||||| ||||||||| || |||| | |  |||||  ||||| |||||||||||||||    
T  23350242 atgaagtgaatttgaacatgtttcaacaataatcactcatcatttcatgttacacacttgaataagcaaaaatcatcaaaa 23350322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 19991347 - 19991285
Alignment:
Q  150 catattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    ||||||| |||||||||||||||  |||||||| ||||||||||||  |||| ||||||||||    
T  19991347 catattagacactcaatcatcatcaattcattctcattctatcatataaacacgaattcaaag 19991285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 438
Target Start/End: Original strand, 16896462 - 16896551
Alignment:
Q  350 cccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaac-caacatggaatcataacatcaatt 438  Q
    |||||||||| || |||| |||||||| ||||||||| ||||||||||| | |||||| ||||||  |||||  ||| ||||||||||||    
T  16896462 cccaaattcgatctcaaaacttgtacactagtttataaacatcaaaagacattcaaaataacaacaaaacatcaaattataacatcaatt 16896551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 283 - 438
Target Start/End: Original strand, 23299354 - 23299509
Alignment:
Q  283 tcttggttgttccctctcgagaactctccaattttcacca-aaaatccttgtttttaatcccctttgacccaaattcgttcccaaagcttgtacattagt 381  Q
    |||||| | ||||||||||||||| |  || ||||||||  |||||||  |||||| ||||||||||| | ||||| || ||| || | |||  ||||||    
T  23299354 tcttgggttttccctctcgagaacccatcacttttcaccccaaaatccc-gtttttgatcccctttgatctaaatttgtcccccaaacatgtttattagt 23299452  T
Q  382 ttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataacatcaatt 438  Q
    | | |||||| ||||   ||||||||||| ||| |||||||||||||| ||||||||    
T  23299453 taaaatacataaaaaagcaatcaaaacaataacaaacatggaatcatagcatcaatt 23299509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 19728551 - 19728504
Alignment:
Q  175 attcattcacattctatcatactaacatgaattcaaagcctcatacta 222  Q
    |||||||||||||  |||||| |||||||||||||||| |||||||||    
T  19728551 attcattcacattaaatcataataacatgaattcaaagtctcatacta 19728504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 14486890 - 14486829
Alignment:
Q  150 catattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaa 211  Q
    |||||||||||||||||||||||||||| | ||  |||  ||||||||| ||||||| ||||    
T  14486890 catattaaacactcaatcatcattgattaactcttatttcatcatactatcatgaatacaaa 14486829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 102; Significance: 3e-50; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 511 - 732
Target Start/End: Complemental strand, 7259 - 7038
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||||||||||||||| | |||||||||| || ||| |||||||||||| ||||||||||||||||||||||  ||| |||||     
T  7259 aaacaaccacaccaattcaaaccccatcaacacataaacataaaccaacattaatgaagtgaattcaaacatgtttcaacaacaatcatacactaattcg 7160  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     || || |||||| |||  |||||||||| ||||  ||| || ||||||||||||||||||||||||||   |||||| |||| ||||||||||||||||    
T  7159 tgaatttcactcagatagtcaaaaatcattaaaacaactcaataacaacaacaactatgaagtttaagctattaacaccacaaattcatgaagtttatca 7060  T
Q  711 tactcacaaattcacttgaatt 732  Q
    ||| ||||  ||||| ||||||    
T  7059 tacccacattttcacatgaatt 7038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 511 - 732
Target Start/End: Complemental strand, 14841 - 14620
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||||||||||||||| | |||||||||| || ||| |||||||||||| ||||||||||||||||||||||  ||| |||||     
T  14841 aaacaaccacaccaattcaaaccccatcaacacataaacataaaccaacattaatgaagtgaattcaaacatgtttcaacaacaatcatacactaattcg 14742  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     || || |||||| |||  |||||||||| ||||  ||| || ||||||||||||||||||||||||||   |||||| |||| ||||||||||||||||    
T  14741 tgaatttcactcagatagtcaaaaatcattaaaacaactcaataacaacaacaactatgaagtttaagctattaacaccacaaattcatgaagtttatca 14642  T
Q  711 tactcacaaattcacttgaatt 732  Q
    ||| ||||  ||||| ||||||    
T  14641 tacccacattttcacatgaatt 14620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 511 - 732
Target Start/End: Complemental strand, 24793 - 24572
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||||||||||||||| | |||||||||| || ||| |||||||||||| ||||||||||||||||||||||  ||| |||||     
T  24793 aaacaaccacaccaattcaaaccccatcaacacataaacataaaccaacattaatgaagtgaattcaaacatgtttcaacaacaatcatacactaattcg 24694  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     || || |||||| |||  |||||||||| ||||  ||| || ||||||||||||||||||||||||||   |||||| |||| ||||||||||||||||    
T  24693 tgaatttcactcagatagtcaaaaatcattaaaacaactcaataacaacaacaactatgaagtttaagctattaacaccacaaattcatgaagtttatca 24594  T
Q  711 tactcacaaattcacttgaatt 732  Q
    ||| ||||  ||||| ||||||    
T  24593 tacccacattttcacatgaatt 24572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 515 - 685
Target Start/End: Complemental strand, 30429 - 30260
Alignment:
Q  515 aaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgat 614  Q
    |||||||||||||||||||||| |||||||| |||||| | ||  ||| |||||||||||||||||||||| | |||||||||||||| ||||||| |||    
T  30429 aaccacaccaattcaaaccccaacaacataccaacatatataatcatttatgaagtgaatttaaacatgttccgacaacaatcactcatcaattcatgat 30330  T
Q  615 ttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataa 685  Q
    ||||||| |||||| |||||||||||||||  ||||| || |||||||||||||||| |||||||||||||    
T  30329 ttacacttaaataagcaaaaatcatcaaaacaacttatcaccaacaacaactatgaa-tttaagcacataa 30260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 31398 - 31293
Alignment:
Q  90 aaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattct 189  Q
    ||||||||| ||||||||||| ||||| |||| |   || | |||||  | |||||||| ||||||| |||| ||||||||||||||||||||  | |||    
T  31398 aaagtttcaaaatcacattttgcataatagacagaatacgatccacataatgacattcaacatattagacacccaatcatcattgattcattcttactct 31299  T
Q  190 atcata 195  Q
    ||||||    
T  31298 atcata 31293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 4e-46; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 512 - 685
Target Start/End: Original strand, 21695023 - 21695197
Alignment:
Q  512 aacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcac 611  Q
    |||||||||||||||||||||||||||||||||||| ||   |  || ||| ||||||||||||||||||||||||||||| ||||||||| ||||| |     
T  21695023 aacaaccacaccaattcaaaccccatcaacatacaatcaggtattaacatttatgaagtgaatttaaacatgtttcaacaataatcactcatcaattgat 21695122  T
Q  612 gatttacactcaaataaacaaaaatcatcaaaatc-acttaacaacaacaacaactatgaagtttaagcacataa 685  Q
    |||||||||| ||||||  |||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||    
T  21695123 gatttacacttaaataagtaaaaatcatcaaaaacaacttatcaacaacatcaactatgaagtttaagcacataa 21695197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 511 - 730
Target Start/End: Complemental strand, 18830864 - 18830650
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||| |||||||||| |||| | ||||||| ||||||||||||| ||  |||||||||||| ||||||||||||||||||||||  || |||||||    
T  18830864 aaacaacctcaccaattcatacccaa-caacatataaacataaacaaacatctatgaagtgaattcaaacatgtttcaacaacaatcatacatcaattca 18830766  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     ||||| || |||||||   ||||||||||||||  |||   ||||||||| |||||||||||||||||   |||||||||| ||||||||||||||| |    
T  18830765 tgattt-cagtcaaatagtaaaaaatcatcaaaacaact---caacaacaataactatgaagtttaagctattaacacaacattttcatgaagtttatta 18830670  T
Q  711 tactcacaaattcacttgaa 730  Q
    ||| || || ||||| ||||    
T  18830669 tacccataatttcacatgaa 18830650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 510 - 713
Target Start/End: Original strand, 25263200 - 25263404
Alignment:
Q  510 caaacaaccacaccaattcaaacccc-atcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaatt 608  Q
    ||||||||||||||| |||||||||| | ||||||||||||||| | ||  ||| |||||||||||||||||||||| |||||| ||||||||| || ||    
T  25263200 caaacaaccacaccacttcaaacccccaacaacatacaaacatatataatcatttatgaagtgaatttaaacatgttccaacaataatcactcatcattt 25263299  T
Q  609 cacgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcaca-taacacaacaatttcatgaagttta 707  Q
     | | |||||||| || ||| ||||||||| |||||  ||||| || ||| |||||||||||| |||||||||| ||||| | ||||| || ||||||||    
T  25263300 aagggtttacacttaattaagcaaaaatcaccaaaacaacttatcaccaataacaactatgaa-tttaagcacattaacatatcaattccaagaagttta 25263398  T
Q  708 tcatac 713  Q
     |||||    
T  25263399 acatac 25263404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 333 - 438
Target Start/End: Original strand, 21694845 - 21694950
Alignment:
Q  333 tttttaatcccctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaacaaccaacatggaatcataaca 432  Q
    ||||| |||||||||||||||||||||| ||  || |||||  ||||||| ||||||||||| ||  ||||||||||||||| |||||||||||||||||    
T  21694845 tttttgatcccctttgacccaaattcgtcccgcaaacttgtttattagttaatatacatcaataggcaatcaaaacaacaacaaacatggaatcataaca 21694944  T
Q  433 tcaatt 438  Q
    ||||||    
T  21694945 tcaatt 21694950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 630 - 713
Target Start/End: Original strand, 24624919 - 24625002
Alignment:
Q  630 caaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatac 713  Q
    |||||||||||||||  ||||| ||||||||||||| ||||| ||||||||||||| ||| |||||| ||||||||||||||||    
T  24624919 caaaaatcatcaaaacaacttatcaacaacaacaaccatgaattttaagcacataatacatcaattttatgaagtttatcatac 24625002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 17508576 - 17508658
Alignment:
Q  132 ccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaagcc 214  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||| | |||||||    
T  17508576 ccacatcatgacattcatcatattaaacacccaatcatcattgattcattcatattctatcatatcaacatgagtacaaagcc 17508658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 511 - 595
Target Start/End: Complemental strand, 17622496 - 17622412
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaa 595  Q
    |||||||| ||||||||| ||   ||||||||||||||||| |||||  ||| ||| |||||||| |||||||||||||||||||    
T  17622496 aaacaaccccaccaattctaaattcatcaacatacaaacatcaacaatcattaatggagtgaattcaaacatgtttcaacaacaa 17622412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 630 - 730
Target Start/End: Original strand, 18828536 - 18828636
Alignment:
Q  630 caaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttga 729  Q
    ||||||||| |||||   |||| ||||||||||||| |||| ||||||| ||||||  || |||||||||||| |||||||||| ||||| ||||| |||    
T  18828536 caaaaatcaccaaaacatcttatcaacaacaacaaccatgaggtttaagtacataatccatcaatttcatgaaatttatcatacccacaatttcacatga 18828635  T
Q  730 a 730  Q
    |    
T  18828636 a 18828636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 25262238 - 25262360
Alignment:
Q  83 aaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattc 182  Q
    ||||| ||||||||||||||  |||||||| |||||||||   ||  | |||||  || ||||||| ||||||||||| ||| |||||||||||||||||    
T  25262238 aaacgataaagtttcacaatatcattttacgtaaaagacgaacaattatccacattaaaacattcaccatattaaacagtcattcatcattgattcattc 25262337  T
Q  183 acattctatcatactaacatgaa 205  Q
      || |||||||| || ||||||    
T  25262338 ttatcctatcatattaccatgaa 25262360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 24383502 - 24383564
Alignment:
Q  150 catattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    ||||||| ||||  |||||||||  |||||||||||||||||||||  |||||||||||||||    
T  24383502 catattagacacctaatcatcatcaattcattcacattctatcatataaacatgaattcaaag 24383564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 87; Significance: 3e-41; HSPs: 3)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 510 - 724
Target Start/End: Original strand, 1819 - 2032
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||  | ||| ||| |||||||||||||||||| |||| ||||| || |||||   |||||    
T  1819 caaacaaccaccccaattcaa-cccaatcaacatacaaacatgtataaacatttatgaagtgaatttaaacacgttttaacaataaccactctttaattc 1917  T
Q  610 acgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatc 709  Q
    | | ||  |||| |||||| |||||||||||||||  ||||| ||||||||||||| ||||| | ||||||||||||| |  ||||||||||||||||||    
T  1918 atggttcgcacttaaataagcaaaaatcatcaaaacaacttatcaacaacaacaaccatgaaatctaagcacataacatattaatttcatgaagtttatc 2017  T
Q  710 atactcacaaattca 724  Q
    |||| ||||||||||    
T  2018 atacccacaaattca 2032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 228 - 343
Alignment:
Q  90 aaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattct 189  Q
    ||||||||| ||||| |||| ||||||| |||||  ||| | ||||| ||| ||||||||||||||||||||  || |||| || |||||| | ||||||    
T  228 aaagtttcaaaatcaaatttcacataaa-gacggacaactatccacatcaaaacattcatcatattaaacaccaaaccatcgtttattcatcctcattct 326  T
Q  190 atcatactaacatgaat 206  Q
    ||||||| | |||||||    
T  327 atcataccatcatgaat 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 435
Target Start/End: Original strand, 1623 - 1746
Alignment:
Q  312 aattttcaccaaaaatccttgtttttaatcccctttgacccaaattcgttcccaaagcttgtacattagtttatatacatcaaaagataatcaaaacaac 411  Q
    |||||||||  |||| || || |||| |||||||||||||   |||||| ||| || |||||  ||||| | | ||||||||||||  ||||||| ||||    
T  1623 aattttcactcaaaaaccctgattttgatcccctttgacctgtattcgtcccccaaacttgtttattaggtaacatacatcaaaaggaaatcaaatcaac 1722  T
Q  412 aaccaacatggaatcataacatca 435  Q
    ||| | || |||||||||||||||    
T  1723 aacaagcaaggaatcataacatca 1746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 511 - 732
Target Start/End: Original strand, 154921 - 155141
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||| |||||| ||| ||||| ||| |||||||||||||  | ||| ||| ||||||||||||||||||||||||||| | ||||||||| |||||||    
T  154921 aaacaatcacaccgatttaaacctcattaacatacaaacatgtataaacatttatgaagtgaatttaaacatgtttcaaccataatcactcatcaattca 155020  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     | || |||||  ||| | |||||||||||||||  ||||| |||||||||||| | || | |||||| |||||||  | ||||||||||||||||| ||    
T  155021 tggttcacacttgaatgagcaaaaatcatcaaaacaacttatcaacaacaacaattgtgga-tttaaggacataacttatcaatttcatgaagtttaaca 155119  T
Q  711 tactcacaaattcacttgaatt 732  Q
    ||| || ||||| || ||||||    
T  155120 tacccataaattgacatgaatt 155141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 518 - 712
Target Start/End: Original strand, 3548 - 3742
Alignment:
Q  518 cacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgattta 617  Q
    ||||||||||||||||||| |||||||||| |||| | ||  ||| ||||||||||||| |||||||| |||||| ||||||||| ||||||| |  |||    
T  3548 cacaccaattcaaaccccaacaacatacaagcatatataatcatttatgaagtgaatttgaacatgttccaacaataatcactcatcaattcatggatta 3647  T
Q  618 cactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacat-aacacaacaatttcatgaagtttatcata 712  Q
    |||| || | ||||||||||| |||||  ||||| || |||||||||||||||| || || || || |||||| ||||||||||||||||| ||||    
T  3648 cacttaattgaacaaaaatcaccaaaacaacttatcaccaacaacaactatgaacttgaa-catataaacacatcaatttcatgaagtttaacata 3742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 2562 - 2688
Alignment:
Q  56 tcattatcaacaaataacactttaaggaaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatatt 155  Q
    ||||||| ||||| || ||| | ||||||||  ||||||||||| ||||||||| |||||||| |||   | | | ||||| || |||||||||||||||    
T  2562 tcattattaacaactatcacctcaaggaaacaataaagtttcacgatcacatttcacataaaatacgaacatctaaccacatcatgacattcatcatatt 2661  T
Q  156 aaacactcaatcatcattgattcattc 182  Q
    ||||||  |||||||||||||||||||    
T  2662 aaacaccaaatcatcattgattcattc 2688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 511 - 713
Target Start/End: Original strand, 3151 - 3344
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||||||| ||||| |||||||||| | ||||||||| ||| ||| |||||||||||| ||| |||||||||||| |||||  || |||||||    
T  3151 aaacaaccacaccaactcaaaacccatcaacacataaacataaataaacattaatgaagtgaattcaaatatgtttcaacaagaatcatacatcaattca 3250  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatca 710  Q
     || || ||||||||||  |||||||||| ||||  ||||         |||||||||||||||||||    ||||||||||| ||||||||||||||||    
T  3251 tgaatttcactcaaatagtcaaaaatcatgaaaacaactt---------aacaactatgaagtttaagatattaacacaacaaattcatgaagtttatca 3341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 511 - 644
Target Start/End: Original strand, 2452 - 2585
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    |||||||||||||||||||||  ||||||||||| ||||||||| | | ||| |||||||||||| ||||||||||||||| ||||||  || |||||||    
T  2452 aaacaaccacaccaattcaaaatccatcaacatataaacataaatagacattaatgaagtgaattcaaacatgtttcaacaccaatcatacaacaattca 2551  T
Q  611 cgatttacactcaaataaacaaaaatcatcaaaa 644  Q
     || || ||||||||||  |||||||||| ||||    
T  2552 tgaatttcactcaaatagtcaaaaatcatgaaaa 2585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 630 - 732
Target Start/End: Complemental strand, 371429 - 371327
Alignment:
Q  630 caaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttga 729  Q
    |||||||||||||||  ||||| ||||||||| ||| ||||  ||||||||||||||||| ||||||||||||||||||||||| |  |||||||| |||    
T  371429 caaaaatcatcaaaacaacttatcaacaacaataaccatgagttttaagcacataacacatcaatttcatgaagtttatcatacccttaaattcacatga 371330  T
Q  730 att 732  Q
    |||    
T  371329 att 371327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 564 - 685
Target Start/End: Original strand, 51804 - 51924
Alignment:
Q  564 atgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcacgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaacaaca 663  Q
    |||||||||| |||||| |||| |||||| ||||||||| ||||||| | |||||||| || ||| |||||||||||||||  ||||| ||  |||||||    
T  51804 atgaagtgaaattaaacttgttccaacaataatcactcatcaattcatggtttacacttaattaagcaaaaatcatcaaaacaacttatcacaaacaaca 51903  T
Q  664 actatgaagtttaagcacataa 685  Q
    ||||||||  ||||||||||||    
T  51904 actatgaa-attaagcacataa 51924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 1275 - 1151
Alignment:
Q  56 tcattatcaacaaataacactttaaggaaacgttaaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatatt 155  Q
    |||| |||||||| |||||| | ||  | ||| |||||||||||||||||||||||| ||||||||||| ||| | ||||| || |||||| ||||||||    
T  1275 tcatcatcaacaattaacacctaaaaaacacgataaagtttcacaatcacattttacttaaaagacgggcaactatccacatcatgacattaatcatatt 1176  T
Q  156 aaacactcaatcatcattgattcat 180  Q
    | | ||  |||||||||||||||||    
T  1175 agatacctaatcatcattgattcat 1151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 630 - 732
Target Start/End: Original strand, 18873 - 18975
Alignment:
Q  630 caaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttga 729  Q
    ||||||||||||||   ||||| ||||||||||||| ||||  ||||||| ||||| |||||||||| |||||||||||||||| |  |||||||| |||    
T  18873 caaaaatcatcaaaccaacttatcaacaacaacaaccatgagttttaagcccataatacaacaattttatgaagtttatcatacccttaaattcacctga 18972  T
Q  730 att 732  Q
    |||    
T  18973 att 18975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 511 - 644
Target Start/End: Original strand, 10066 - 10204
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgt-----ttcaacaacaatcactcacca 605  Q
    ||||||| |||||||||||||  ||||||||||| ||||||||| ||| ||| |||||||||||| ||||||||     || |||||||||||  |||||    
T  10066 aaacaactacaccaattcaaaatccatcaacatataaacataaataaacattaatgaagtgaattcaaacatgtttaagtttaacaacaatcatacacca 10165  T
Q  606 attcacgatttacactcaaataaacaaaaatcatcaaaa 644  Q
    ||||| || || ||||||||||  ||||| |||| ||||    
T  10166 attcatgaatttcactcaaatagtcaaaattcatgaaaa 10204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 20114 - 20009
Alignment:
Q  90 aaagtttcacaatcacattttacataaaagacggggaacaacccacaccaagacattcatcatattaaacactcaatcatcattgattcattcacattct 189  Q
    ||||||||| ||||||||||| ||||||||| ||  | | | ||||| || |||||||| |||||||||||| |||||||| |||||||||||  |||||    
T  20114 aaagtttcaaaatcacattttgcataaaagatggacatctaaccacatcatgacattcaacatattaaacacccaatcatctttgattcattcttattct 20015  T
Q  190 atcata 195  Q
    ||||||    
T  20014 atcata 20009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 661 - 732
Target Start/End: Original strand, 10620 - 10691
Alignment:
Q  661 acaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttgaatt 732  Q
    ||||||||||| |||||| ||||||||  |||||||||||||| ||||||||| || |||||||||||||||    
T  10620 acaactatgaaatttaagaacataacatcacaatttcatgaagattatcatacccataaattcacttgaatt 10691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 609
Target Start/End: Original strand, 5330 - 5428
Alignment:
Q  510 caaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 609  Q
    ||||||| |||||||||| || | | || |||||| ||| ||||| ||| ||| |||||||||||||||| |||| ||||||| ||||||||| ||||||    
T  5330 caaacaatcacaccaatttaatctc-atgaacatataaatataaataaacatttatgaagtgaatttaaatatgtgtcaacaataatcactcatcaattc 5428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 630 - 732
Target Start/End: Complemental strand, 1167 - 1065
Alignment:
Q  630 caaaaatcatcaaaatcacttaacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaaattcacttga 729  Q
    |||||||||| ||||  ||||| ||||||||||||| ||||  |||||||||||||||||  |||||||| || |||||| ||| || |||||||| |||    
T  1167 caaaaatcattaaaacaacttatcaacaacaacaaccatgatttttaagcacataacacattaatttcataaattttatcgtacccataaattcacatga 1068  T
Q  730 att 732  Q
    |||    
T  1067 att 1065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 48479 - 48411
Alignment:
Q  144 attcatcatattaaacactcaatcatcattgattcattcacattctatcatactaacatgaattcaaag 212  Q
    |||||||||||||||||| ||||||||||  ||||||| |||||||||| || | ||||||||||||||    
T  48479 attcatcatattaaacacccaatcatcatcaattcatttacattctatcgtattcacatgaattcaaag 48411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2087 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold2087
Description:

Target: scaffold2087; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 511 - 596
Target Start/End: Original strand, 117 - 202
Alignment:
Q  511 aaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaacaat 596  Q
    |||||| |||| ||||||||| ||||||||||||  |||||  | ||| ||  |||||||||||| ||||||||||||||||||||    
T  117 aaacaatcacaacaattcaaagcccatcaacataacaacatgtataaaaatatatgaagtgaattcaaacatgtttcaacaacaat 202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 651 - 719
Target Start/End: Original strand, 2231 - 2299
Alignment:
Q  651 aacaacaacaacaactatgaagtttaagcacataacacaacaatttcatgaagtttatcatactcacaa 719  Q
    ||||||||||||| ||||||  ||||| |||| |||||| |||||| ||||||||||||| || |||||    
T  2231 aacaacaacaacatctatgagttttaaccacacaacacatcaattttatgaagtttatcacacccacaa 2299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Complemental strand, 106093 - 106050
Alignment:
Q  567 aagtgaatttaaacatgtttcaacaacaatcactcaccaattca 610  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||    
T  106093 aagtgaatttagacatgtttgaacaacaatcactcacaaattca 106050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 100690 - 100639
Alignment:
Q  144 attcatcatattaaacactcaatcatcattgattcattcacattctatcata 195  Q
    ||||||||| |||||||| ||| ||||||||||||||||  |||||||||||    
T  100690 attcatcatgttaaacacccaaccatcattgattcattcttattctatcata 100639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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