View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_41 (Length: 323)
Name: NF0913_low_41
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_41 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 107 - 323
Target Start/End: Original strand, 34352896 - 34353112
Alignment:
| Q |
107 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
206 |
Q |
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| T |
34352896 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
34352995 |
T |
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| Q |
207 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacag |
306 |
Q |
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| T |
34352996 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacag |
34353095 |
T |
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| Q |
307 |
acaaaataagcaaaaca |
323 |
Q |
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| T |
34353096 |
acaaaataagcaaaaca |
34353112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 34358547 - 34358679
Alignment:
| Q |
119 |
cacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaa |
218 |
Q |
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| T |
34358547 |
cacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaa |
34358646 |
T |
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| Q |
219 |
accattggcgtttttcctatgagctgtaccatg |
251 |
Q |
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| T |
34358647 |
accattggcgtttttcctatgagttgtgccatg |
34358679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 34369011 - 34369126
Alignment:
| Q |
129 |
tacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaaaccattggcg |
228 |
Q |
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| T |
34369011 |
tacctgtctttgacactacaacaaggctccataatctcaagcttagcagcaatattagcaacggaaccctttgcgatgctattcagataaaccattggtg |
34369110 |
T |
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| Q |
229 |
tttttcctatgagctg |
244 |
Q |
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| T |
34369111 |
tttttcctatgagctg |
34369126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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