View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_low_46 (Length: 321)

Name: NF0913_low_46
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_low_46
NF0913_low_46
[»] chr7 (2 HSPs)
chr7 (74-310)||(43208559-43208798)
chr7 (1-77)||(43208447-43208523)
[»] chr1 (7 HSPs)
chr1 (180-276)||(45136775-45136871)
chr1 (182-276)||(38839716-38839810)
chr1 (187-286)||(33099679-33099778)
chr1 (261-313)||(68100-68152)
chr1 (184-275)||(3231883-3231975)
chr1 (261-301)||(24873768-24873808)
chr1 (261-301)||(24874601-24874641)
[»] chr2 (5 HSPs)
chr2 (182-312)||(16863382-16863510)
chr2 (183-312)||(34176569-34176697)
chr2 (182-301)||(13712951-13713071)
chr2 (208-283)||(2248986-2249061)
chr2 (186-313)||(16576177-16576303)
[»] chr8 (3 HSPs)
chr8 (244-312)||(7590336-7590404)
chr8 (208-309)||(34695778-34695880)
chr8 (205-283)||(39280900-39280978)
[»] chr5 (2 HSPs)
chr5 (257-301)||(14138544-14138588)
chr5 (262-303)||(17736929-17736970)
[»] chr4 (2 HSPs)
chr4 (261-313)||(15131595-15131647)
chr4 (186-226)||(49014285-49014325)
[»] chr3 (3 HSPs)
chr3 (187-301)||(7641777-7641891)
chr3 (245-283)||(20519519-20519557)
chr3 (182-286)||(46303295-46303398)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 74 - 310
Target Start/End: Original strand, 43208559 - 43208798
Alignment:
Q  74 ggcaaagaggtggaatgatgggatgtggtggtgtaattagagatgagaat---ggcaaatggttagataagtttgctaaatatcttgttcaaataaatga 170  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||    
T  43208559 ggcaaagaggtggtatgatgggatgtggtggtgtaattagagatgagaataatggcaaatggttagataagtttgctaaatatcttgttcgaataaatga 43208658  T
Q  171 ttttacatgacggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaat 270  Q
    || ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  43208659 ttatacatgatggttttttctacattatcccttgatgaattgagggtaatttatccctatcgaataaaaagttatttttcttcatctttattcttacaat 43208758  T
Q  271 cagttaccatttttattttaagaatatcaaattccttcat 310  Q
    || |||||||||||||||||||||||||||||||||||||    
T  43208759 caattaccatttttattttaagaatatcaaattccttcat 43208798  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 43208447 - 43208523
Alignment:
Q  1 tttagggttagtagagaagcttcaccttctgataaaagaggttttttatgttagttgggaatctcaaccttcaggca 77  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43208447 tttagggttagttgagaagcttcaccttctgataaaagaggttttttatgttagttgggaatctcaaccttcaggca 43208523  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 45136871 - 45136775
Alignment:
Q  180 acggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagtta 276  Q
    |||||||||| |||| ||||||| ||| ||||||||| |||||| ||||||| || |||||  |  ||||||| |||||||||||||||||||||||    
T  45136871 acggttttttttacactatccctcgatgaattgaggaaaatttacccctatcaaagaaaaatctcattttcttcatctttattcttacaatcagtta 45136775  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 38839810 - 38839716
Alignment:
Q  182 ggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagtta 276  Q
    |||||||| |||||||||| ||| | ||||| |||||||||||  ||||| || |||||  || |||| || ||||||||||||||||| |||||    
T  38839810 ggttttttatacattatcctttgtttaattggggataatttatttctatcaaagaaaaatctaatttttttcatctttattcttacaattagtta 38839716  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 33099778 - 33099679
Alignment:
Q  187 tttctacattatcccttgataaattgaggataatttatccctatccaataaaaaat-tatttttctttatctttattcttacaatcagttaccattttta 285  Q
    |||||||||||| ||||||||||||| || ||||||| || |||| || ||||||  ||||||| ||| ||  |||||||||||||||||  ||||||||    
T  33099778 tttctacattattccttgataaattgggg-taatttacccatatcaaagaaaaaaaatatttttttttgtcaatattcttacaatcagttgtcattttta 33099680  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 68100 - 68152
Alignment:
Q  261 ttcttacaatcagttaccatttttattttaagaatatcaaattccttcatctc 313  Q
    |||||||||| ||||||||||||||||| ||||| ||| || | |||||||||    
T  68100 ttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctc 68152  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 3231883 - 3231975
Alignment:
Q  184 ttttttctacattatcc-cttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagtt 275  Q
    ||||||||||||||||| ||| |||| |||| | |||||||||| |||  || ||||| | ||||||||| || |||||  ||||||||||||    
T  3231883 ttttttctacattatccactttataagttgaaggtaatttatccatataaaagaaaaactcatttttcttcatgtttatctttacaatcagtt 3231975  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 24873768 - 24873808
Alignment:
Q  261 ttcttacaatcagttaccatttttattttaagaatatcaaa 301  Q
    |||||||||||| |||||||||| |||||||||| ||||||    
T  24873768 ttcttacaatcaattaccattttcattttaagaagatcaaa 24873808  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 24874601 - 24874641
Alignment:
Q  261 ttcttacaatcagttaccatttttattttaagaatatcaaa 301  Q
    |||||||||||| |||||||||| |||||||||| ||||||    
T  24874601 ttcttacaatcaattaccattttcattttaagaagatcaaa 24874641  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 312
Target Start/End: Original strand, 16863382 - 16863510
Alignment:
Q  182 ggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagttaccatt 281  Q
    |||||||||||||||| |||   || ||||| || |||||||||| |||| || ||||| |  ||||||||  |||||||||||||||||||||||||||    
T  16863382 ggttttttctacattaccccaccatgaattgggg-taatttatccatatcaaagaaaaattcctttttcttc-tctttattcttacaatcagttaccatt 16863479  T
Q  282 tttattttaagaatatcaaattccttcatct 312  Q
    || || | ||||| |||||||| ||||||||    
T  16863480 ttcatctcaagaacatcaaatttcttcatct 16863510  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 312
Target Start/End: Original strand, 34176569 - 34176697
Alignment:
Q  183 gttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattat-ttttctttatctttattcttacaatcagttaccatt 281  Q
    |||||||||||||||||||||||  |||||||| |||| || ||||||   | || || |||| ||||||| |||||||||  |||||||||||||||||    
T  34176569 gttttttctacattatcccttgaataattgagggtaatata-ccctattagagaacaa-ttatattttcttcatctttatttctacaatcagttaccatt 34176666  T
Q  282 tttattttaagaatatcaaattccttcatct 312  Q
    || || |||||||||||||| | ||||||||    
T  34176667 ttcatcttaagaatatcaaacttcttcatct 34176697  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 301
Target Start/End: Complemental strand, 13713071 - 13712951
Alignment:
Q  182 ggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaa--at-tatttttctttatctttattcttacaatcagttacc 278  Q
    ||||||||||||  ||  || |||| |||||||||||||||| ||||||| || |||||  || ||||||| ||||| ||||||| ||||||| ||||||    
T  13713071 ggttttttctacgctactccatgatgaattgaggataattta-ccctatcaaagaaaaatcatatattttt-tttatatttattcctacaatcggttacc 13712974  T
Q  279 atttttattttaagaatatcaaa 301  Q
    |||||||| |||| ||| |||||    
T  13712973 atttttatcttaaaaatttcaaa 13712951  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 2249061 - 2248986
Alignment:
Q  208 aattgaggataatttatccctatccaataaaaaattat-ttttctttatctttattcttacaatcagttaccatttt 283  Q
    |||||||||||||||| | ||||| || ||||| | || ||||||| ||||||||||||| ||| ||||||||||||    
T  2249061 aattgaggataatttacctctatcaaagaaaaa-tcatattttcttcatctttattcttagaattagttaccatttt 2248986  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 313
Target Start/End: Original strand, 16576177 - 16576303
Alignment:
Q  186 ttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattat-ttttctttatctttattcttacaatcagttaccattttt 284  Q
    ||||||||||||||| | ||| |||||  | ||||||| ||||||| || ||||| |||| ||||||| | |||| |||||||||||| ||||||||||     
T  16576177 ttttctacattatccttagatcaattggcg-taatttagccctatcaaagaaaaa-ttatcttttcttcaccttttttcttacaatcaattaccattttc 16576274  T
Q  285 attttaagaatatcaaattccttcatctc 313  Q
     | | ||||| |||||| | |||||||||    
T  16576275 ctctcaagaacatcaaacttcttcatctc 16576303  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 7590404 - 7590336
Alignment:
Q  244 atttttctttatctttattcttacaatcagttaccatttttattttaagaatatcaaattccttcatct 312  Q
    |||||||||  ||||||||||||||||| ||||||| ||| |||| ||||| |||||||| ||||||||    
T  7590404 atttttcttcgtctttattcttacaatcggttaccaatttcatttcaagaacatcaaatttcttcatct 7590336  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 34695778 - 34695880
Alignment:
Q  208 aattgaggataatttatcc-ctatccaataaaaaattatttttctttatctttattcttacaatcagttaccatttttattttaagaatatcaaattcct 306  Q
    ||||||||||||||||||| || || || ||||| |   ||||||| ||||||||||||||||||||||| ||||||  ||| || | ||||||||| ||    
T  34695778 aattgaggataatttatcctctgtcaaagaaaaattctcttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttct 34695877  T
Q  307 tca 309  Q
    |||    
T  34695878 tca 34695880  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 39280900 - 39280978
Alignment:
Q  205 ataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagttaccatttt 283  Q
    |||||||| |||||||||| ||||||| || |||||     ||||||| ||||||||||||| ||||||||||||||||    
T  39280900 ataaattggggataatttacccctatcaaagaaaaatccccttttcttcatctttattcttaaaatcagttaccatttt 39280978  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 14138544 - 14138588
Alignment:
Q  257 tttattcttacaatcagttaccatttttattttaagaatatcaaa 301  Q
    |||||||||||||||| |||||||||| || ||||||||||||||    
T  14138544 tttattcttacaatcaattaccattttcatcttaagaatatcaaa 14138588  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 17736970 - 17736929
Alignment:
Q  262 tcttacaatcagttaccatttttattttaagaatatcaaatt 303  Q
    ||||||||||  ||||||||||||| ||||||||||||||||    
T  17736970 tcttacaatcgattaccatttttatcttaagaatatcaaatt 17736929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 15131647 - 15131595
Alignment:
Q  261 ttcttacaatcagttaccatttttattttaagaatatcaaattccttcatctc 313  Q
    ||||||| |||||||||||||||||| | ||||| |||||||| |||||||||    
T  15131647 ttcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctc 15131595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 49014285 - 49014325
Alignment:
Q  186 ttttctacattatcccttgataaattgaggataatttatcc 226  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  49014285 ttttctacattaccccttgatgaattgaggataatttatcc 49014325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 301
Target Start/End: Original strand, 7641777 - 7641891
Alignment:
Q  187 tttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagttaccatttttat 286  Q
    |||||| |||| ||||| |  ||| |||| ||||||| ||||||| || ||||  ||  ||||||| | ||||||||||| ||||||||| |||||||||    
T  7641777 tttctagattaccccttaaagaatagagggtaatttacccctatcaaagaaaattttcattttcttcaactttattcttaaaatcagttatcatttttat 7641876  T
Q  287 tttaagaatatcaaa 301  Q
     | ||||| ||||||    
T  7641877 atcaagaacatcaaa 7641891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 20519557 - 20519519
Alignment:
Q  245 tttttctttatctttattcttacaatcagttaccatttt 283  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  20519557 tttttcttcatctttcttcttacaatcagttaccatttt 20519519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 46303295 - 46303398
Alignment:
Q  182 ggttttttctacattatcccttgataaattgaggataatttatccctatccaataaaaaattatttttctttatctttattcttacaatcagttaccatt 281  Q
    ||||||||||||||||| ||||||| ||||| |  |||||||  |||||| || |||||  ||||||| || ||| || ||||||||||||  || ||||    
T  46303295 ggttttttctacattattccttgatgaattgggagtaatttactcctatcaaagaaaaatctattttttttcatcatt-ttcttacaatcaaatatcatt 46303393  T
Q  282 tttat 286  Q
    |||||    
T  46303394 tttat 46303398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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