View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_low_5 (Length: 635)

Name: NF0913_low_5
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_low_5
NF0913_low_5
[»] chr7 (7 HSPs)
chr7 (255-558)||(36386335-36386638)
chr7 (4-185)||(36386709-36386890)
chr7 (518-606)||(36386241-36386329)
chr7 (345-420)||(22266610-22266685)
chr7 (414-454)||(22266717-22266757)
chr7 (382-425)||(26996195-26996238)
chr7 (351-441)||(3174797-3174885)
[»] chr5 (4 HSPs)
chr5 (345-443)||(35201829-35201926)
chr5 (345-453)||(27907328-27907436)
chr5 (408-470)||(35869421-35869483)
chr5 (257-348)||(35869626-35869714)
[»] chr2 (2 HSPs)
chr2 (354-454)||(14434786-14434886)
chr2 (271-326)||(14434984-14435039)
[»] chr6 (1 HSPs)
chr6 (273-326)||(32008940-32008993)
[»] chr4 (4 HSPs)
chr4 (274-346)||(10698258-10698330)
chr4 (274-346)||(10912025-10912097)
chr4 (274-344)||(10673830-10673900)
chr4 (274-344)||(10887470-10887540)
[»] chr1 (1 HSPs)
chr1 (345-419)||(18706434-18706508)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 255 - 558
Target Start/End: Complemental strand, 36386638 - 36386335
Alignment:
Q  255 caacttcagtgcaagacgaatttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctgctcttctttt 354  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36386638 caacttcagtgcgagacgaatttctcttaactcagaccttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctgctcttctttt 36386539  T
Q  355 ctctctatttggtggttactcttcgcacaaaaacactctcttctcaaccctaatatgacatctctccacttatataagtgagacataatgtactaacata 454  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36386538 ctctctttttggtggttactcttcgcacaaaaacactctcttctcaaccctaatatgacatctctccacttatataagtgagacataatgtactaacata 36386439  T
Q  455 cttgagcttttttccatgtaggaagagaatttaacaactattttttggacaactagatatattcaattaaatgaggtatgctatttgaaagtacgattga 554  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36386438 cttgagcttttctccatgtaggaagagaatttaacaactattttttggacaactagatatatacaattaaatgaggtatgctatttgaaagtacgattga 36386339  T
Q  555 gaga 558  Q
    ||||    
T  36386338 gaga 36386335  T

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Target: chr7; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 36386890 - 36386709
Alignment:
Q  4 atgtcgaagaatattaaagagacgaactgttgaaccatttgaagtctaaattttgaaagaatcaaccacgtggttagtctcacaaaagatatgagagatt 103  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36386890 atgtggaacaatattaaagagacgaactgttgaaccatttgaagtctaaattttgaaagaatcaaccacgtggttagtctcacaaaagatatgagagatt 36386791  T
Q  104 ttgaaccctaaaagtattgctttaaacccattagttttggtcacaaaaccatagcaatggtgtctcgtattactcccttaat 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36386790 ttgaaccctaaaagtattgctttaaacccattagttttggtcacaaaaccatagcaatggtgtctcgtattacccccttaat 36386709  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 518 - 606
Target Start/End: Complemental strand, 36386329 - 36386241
Alignment:
Q  518 caattaaatgaggtatgctatttgaaagtacgattgagagagttgtctcataaattgtcatgaaataattctttaatcaccctcttatc 606  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36386329 caattaaataaggtatgttatttgaaagtacgattgagagagttgtctcataaattgtcataaaataattctttaatcaccctcttatc 36386241  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 345 - 420
Target Start/End: Original strand, 22266610 - 22266685
Alignment:
Q  345 ctcttcttttctctctatttggtggttactcttcgcac-aaaaacactctcttctcaaccctaatatgacatctctc 420  Q
    |||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  22266610 ctcttcttttctctct-tttggtggctactcttctcaccaaaaacactctcttctcaaccctattatgacatctctc 22266685  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 22266717 - 22266757
Alignment:
Q  414 atctctccacttatataagtgagacataatgtactaacata 454  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  22266717 atctctccacttatataaatgagacataatggactaacata 22266757  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 425
Target Start/End: Complemental strand, 26996238 - 26996195
Alignment:
Q  382 caaaaacactctcttctcaaccctaatatgacatctctccactt 425  Q
    |||||||||||||||||| |||| |||||||||| |||||||||    
T  26996238 caaaaacactctcttctcgaccccaatatgacatttctccactt 26996195  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 441
Target Start/End: Original strand, 3174797 - 3174885
Alignment:
Q  351 ttttctctctatttggtggttactcttcgcacaaaaacactctcttctcaaccctaatatgacatctctccacttatataagtgagacata 441  Q
    |||| ||||| ||||||| ||||||||  || |||||||||| ||||||| ||||| || ||  ||||||||||||||||||||| |||||    
T  3174797 ttttttctctctttggtgtttactcttaccaaaaaaacactc-cttctca-ccctattacgatctctctccacttatataagtgatacata 3174885  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 345 - 443
Target Start/End: Original strand, 35201829 - 35201926
Alignment:
Q  345 ctcttcttttctctctatttggtggttactcttcgcacaaaaacactctcttctcaaccctaatatgacatctctccacttatataagtgagacataat 443  Q
    |||||||||||||| | |||||||| |||| ||| |||| ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35201829 ctcttcttttctcttt-tttggtggctacttttctcacataaaaactttgttctcaaccctaatatgacatctctccacttatataagtgagacataat 35201926  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 27907328 - 27907436
Alignment:
Q  345 ctcttcttttctctctatttggtggttactcttcgcac-aaaaacactctcttctcaaccctaatatgacatctctccacttatataagtgagacataat 443  Q
    |||||||||||||||| ||||| || |||||||| ||| ||||| || ||||| | |||||||| ||||||| ||| |||||||||||||||||||||||    
T  27907328 ctcttcttttctctct-tttggaggatactcttctcaccaaaaagacactcttttgaaccctaacatgacatatctacacttatataagtgagacataat 27907426  T
Q  444 gtactaacat 453  Q
    | ||||||||    
T  27907427 ggactaacat 27907436  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 35869483 - 35869421
Alignment:
Q  408 tatgacatctctccacttatataagtgagacataatgtactaacatacttgagcttttttcca 470  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| ||||    
T  35869483 tatgacatctctccacttatataagtgagacataatgaactaacatatttgagtttttctcca 35869421  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 257 - 348
Target Start/End: Complemental strand, 35869714 - 35869626
Alignment:
Q  257 acttcagtgcaagacgaatttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctgctct 348  Q
    |||||| ||| |||||||||||||||| || ||| ||||||||||||||   ||||   ||||||||||||| |||||||||||||||||||    
T  35869714 acttcaatgcgagacgaatttctcttagctgagaccttgtttcgaagatatgaaca---aaaaggtagacacaaatgttgtgaacctgctct 35869626  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 354 - 454
Target Start/End: Complemental strand, 14434886 - 14434786
Alignment:
Q  354 tctctctatttggtggttactcttcgcacaaaaacactctcttctcaaccctaatatgacatctctccacttatataagtgagacataatgtactaacat 453  Q
    ||||||| |||||||| |||| |   ||||||| |||||||||||  |   ||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  14434886 tctctctttttggtggctactatcatcacaaaatcactctcttcttcattataatatgacatctttccacttatataagtgagacataattgactaacat 14434787  T
Q  454 a 454  Q
    |    
T  14434786 a 14434786  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 14435039 - 14434984
Alignment:
Q  271 cgaatttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagac 326  Q
    ||||||||||| | |||||  |||||||||| ||||||||| ||||||||||||||    
T  14435039 cgaatttctctcagctcaggccttgtttcgacgatccaaacggtgaaaaggtagac 14434984  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 32008993 - 32008940
Alignment:
Q  273 aatttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagac 326  Q
    |||||||||||||||| | |||||||||| ||||||||| ||||||||||||||    
T  32008993 aatttctcttaactcaaaccttgtttcgacgatccaaacggtgaaaaggtagac 32008940  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 10698258 - 10698330
Alignment:
Q  274 atttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctgct 346  Q
    |||||||| |||||||| ||||||||||  |||||||| |||||||||||||| |   |||||||||||||||    
T  10698258 atttctctcaactcagaccttgtttcgacaatccaaacggtgaaaaggtagacccaggtgttgtgaacctgct 10698330  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 10912025 - 10912097
Alignment:
Q  274 atttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctgct 346  Q
    |||||||| |||||||| ||||||||||  |||||||| |||||||||||||| |   |||||||||||||||    
T  10912025 atttctctcaactcagaccttgtttcgacaatccaaacggtgaaaaggtagacccaggtgttgtgaacctgct 10912097  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 10673900 - 10673830
Alignment:
Q  274 atttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctg 344  Q
    |||| ||| |||||||| |||||||||| |||||| || || ||||||||||| |  ||||||||||||||    
T  10673900 atttttctcaactcagaccttgtttcgacgatccagacggtcaaaaggtagacccagatgttgtgaacctg 10673830  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 10887540 - 10887470
Alignment:
Q  274 atttctcttaactcagatcttgtttcgaagatccaaacagtgaaaaggtagacaccaatgttgtgaacctg 344  Q
    |||| ||| |||||||| |||||||||| |||||| || || ||||||||||| |  ||||||||||||||    
T  10887540 atttttctcaactcagaccttgtttcgacgatccagacggtcaaaaggtagacccagatgttgtgaacctg 10887470  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 419
Target Start/End: Original strand, 18706434 - 18706508
Alignment:
Q  345 ctcttcttttctctctatttggtggttactcttcgcacaaaaacactctcttctcaaccctaatatgacatctct 419  Q
    ||||||| |||||||  |||||||| |||| ||| |||||||||||| ||| || || |||||||||||||||||    
T  18706434 ctcttctcttctctcattttggtggctacttttctcacaaaaacactatctccttaatcctaatatgacatctct 18706508  T

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