View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_57 (Length: 303)
Name: NF0913_low_57
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 21196206 - 21195915
Alignment:
| Q |
1 |
catcattaactgctagtgctgctgtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21196206 |
catcattaactgctagtgctgctgtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttctt |
21196107 |
T |
|
| Q |
101 |
ggcttcatcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21196106 |
ggcttcttcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttc |
21196007 |
T |
|
| Q |
201 |
tctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21196006 |
tctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcat |
21195915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 27251955 - 27251664
Alignment:
| Q |
1 |
catcattaactgctagtgctgctgtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251955 |
catcattaactgctagtgctgctgtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttctt |
27251856 |
T |
|
| Q |
101 |
ggcttcatcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251855 |
ggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttc |
27251756 |
T |
|
| Q |
201 |
tctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251755 |
tctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcat |
27251664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 69 - 292
Target Start/End: Complemental strand, 27268721 - 27268498
Alignment:
| Q |
69 |
taagagtagcctttgacgaacaattccttcttggcttcatcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcgga |
168 |
Q |
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|
|||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |
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| T |
27268721 |
taagagtatcctttgacaaacaattccttcttggcttcctcagattcaccctcaccagtgtactttccaagttgagcaagtgagttggacttagcacgga |
27268622 |
T |
|
| Q |
169 |
aaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtg |
268 |
Q |
| |
|
|||| || |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| |
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| T |
27268621 |
aaaggagtgcttcttgtgctgcctgaacgttctctatgcggcctccccatgtcttcaatgcggtgttctggagagctcttgcatatgagaatgacacgtg |
27268522 |
T |
|
| Q |
269 |
ccatgggtttggagattggttcat |
292 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
27268521 |
ccatgggtttggagattggttcat |
27268498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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