View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_low_58 (Length: 297)

Name: NF0913_low_58
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_low_58
NF0913_low_58
[»] chr6 (10 HSPs)
chr6 (30-278)||(2934167-2934412)
chr6 (48-278)||(2659268-2659495)
chr6 (30-278)||(2926728-2926973)
chr6 (30-278)||(2951510-2951755)
chr6 (30-278)||(3004046-3004291)
chr6 (30-281)||(2997659-2997907)
chr6 (30-278)||(2982434-2982685)
chr6 (30-281)||(2964050-2964304)
chr6 (32-184)||(2972570-2972720)
chr6 (179-281)||(2973727-2973829)
[»] scaffold0024 (1 HSPs)
scaffold0024 (48-278)||(35489-35719)
[»] chr7 (2 HSPs)
chr7 (48-278)||(3338767-3338994)
chr7 (87-143)||(20012216-20012272)
[»] chr3 (2 HSPs)
chr3 (30-140)||(49612977-49613093)
chr3 (170-280)||(49618100-49618210)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 30 - 278
Target Start/End: Original strand, 2934167 - 2934412
Alignment:
Q  30 gcatacactcccaaagttgtttccattggcccctttcaccacggtcacccccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttc 129  Q
    |||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||||    
T  2934167 gcatacacccccactgtcgtttccattggcccctttcaccacggtcacccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttc 2934266  T
Q  130 tcaaacgaaccgaggcatattgtttaaacaccttggtcaactacatagaatctatcttatctgatttcaaaggctgttattccgaaaccctaccattttc 229  Q
    || || ||||| ||||||   ||||||||  ||| |||  ||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  2934267 tccaaagaaccaaggcat---gtttaaacgacttagtctgctacatagaatctatcttatctgatttcaaacgttgttattctgaaaccctaccattttc 2934363  T
Q  230 tcataatgaacttgttaagttaattttaatggattccggttttataatt 278  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  2934364 tcatgatgaacttgttaagttaattttaatagattccgcttttataatt 2934412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 48 - 278
Target Start/End: Complemental strand, 2659495 - 2659268
Alignment:
Q  48 gtttccattggcccctttcaccacggtcacccccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttctcaaacgaaccgaggcat 147  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||||    
T  2659495 gtttccattggcccctttcaccatgatcacccccagctccaaaacatggaacgtcacaaactcatttacttgaaagcttttctccaacgaaccaatgcat 2659396  T
Q  148 attgtttaaacaccttggtcaactacatagaatctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaa 247  Q
       ||||| |||||||||||| | ||||| |||||| |||||||  ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||    
T  2659395 ---gtttagacaccttggtcagcaacataaaatctaacttatctcgtttcaaaagttgttattccgaaaccctaccattttctgataatgaacttgttaa 2659299  T
Q  248 gttaattttaatggattccggttttataatt 278  Q
    |||||| ||||| |||||| |||||||||||    
T  2659298 gttaatcttaatcgattcctgttttataatt 2659268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 30 - 278
Target Start/End: Original strand, 2926728 - 2926973
Alignment:
Q  30 gcatacactcccaaagttgtttccattggcccctttcaccacggtcacccccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttc 129  Q
    |||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| | |||||    
T  2926728 gcatacacccccaaggtcgtttctattggcccctttcaccacggtcaaccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttc 2926827  T
Q  130 tcaaacgaaccgaggcatattgtttaaacaccttggtcaactacatagaatctatcttatctgatttcaaaggctgttattccgaaaccctaccattttc 229  Q
    || || ||||| ||||||   ||||||||  ||| |||  ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  2926828 tccaaagaaccaaggcat---gtttaaacgacttagtcggctacatagaatctatcttatctgatttcaaacgttgttattccgaaaccctaccattttc 2926924  T
Q  230 tcataatgaacttgttaagttaattttaatggattccggttttataatt 278  Q
    |||| ||||||||||||||||||| |||||  |||||| ||||||||||    
T  2926925 tcatgatgaacttgttaagttaatcttaatcaattccgcttttataatt 2926973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 30 - 278
Target Start/End: Original strand, 2951510 - 2951755
Alignment:
Q  30 gcatacactcccaaagttgtttccattggcccctttcaccacggtcacccccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttc 129  Q
    |||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||||    
T  2951510 gcatacacccccaaggtcgtttccattggcccctttcaccatggtcacccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttc 2951609  T
Q  130 tcaaacgaaccgaggcatattgtttaaacaccttggtcaactacatagaatctatcttatctgatttcaaaggctgttattccgaaaccctaccattttc 229  Q
    || || ||||| ||||||   ||||||||  ||| ||   ||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  2951610 tccaaagaaccaaggcat---gtttaaacgacttagttgtctacatagaatctatcttatctgatttcaaaagttgttattctgaaaccctaccattttc 2951706  T
Q  230 tcataatgaacttgttaagttaattttaatggattccggttttataatt 278  Q
    |||| ||||||||||||||||||| ||||| ||||||| ||||||||||    
T  2951707 tcatgatgaacttgttaagttaatcttaatcgattccgcttttataatt 2951755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 3004291 - 3004046
Alignment:
Q  30 gcatacactcccaaagttgtttccattggcccctttcaccacggtcacccccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttc 129  Q
    |||||||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| | |||||    
T  3004291 gcatacacccccactgtcgtttccattggcccctttcaccacggtcacccccagctccaaaacatggaaaatcagaaactcatttacttcaaggattttc 3004192  T
Q  130 tcaaacgaaccgaggcatattgtttaaacaccttggtcaactacatagaatctatcttatctgatttcaaaggctgttattccgaaaccctaccattttc 229  Q
    || || ||||| ||||||   ||||||||  ||| |||  ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||    
T  3004191 tccaaagaaccaaggcat---gtttaaacgacttagtctgctacatagaatctgtcttatctgatttcaaacgttgttattccgaaaccctaccattttc 3004095  T
Q  230 tcataatgaacttgttaagttaattttaatggattccggttttataatt 278  Q
    |||| ||||||||||||||||||| ||||| ||||||| ||||||||||    
T  3004094 tcatgatgaacttgttaagttaatcttaatcgattccgcttttataatt 3004046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 2997907 - 2997659
Alignment:
Q  30 gcatacactcccaaagttgtttccattggcccctttcaccacggtcacccccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttc 129  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||| ||||||||| |||||||||||||||    
T  2997907 gcatacacccccactgtcgtttccattggcccctttcaccatggtcatccacagctccaaaacatggaacctcagaaactcattcacttcaaagcttttc 2997808  T
Q  130 tcaaacgaaccgaggcatattgtttaaacaccttggtcaactacatagaatctatcttatctgatttcaaaggctgttattccgaaaccctaccattttc 229  Q
    || ||||||| |||||||   |||||||   ||| ||   |||| |||| |||||||||||| |||||||| | ||||||||||||||||||||||||||    
T  2997807 tccaacgaactgaggcat---gtttaaatgacttagtatgctacgtagattctatcttatctaatttcaaacgttgttattccgaaaccctaccattttc 2997711  T
Q  230 tcataatgaacttgttaagttaattttaatggattccggttttataattgaa 281  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  2997710 tcatgatgaacttgttaagttaatcttaatcgattccggttttataattgaa 2997659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 278
Target Start/End: Original strand, 2982434 - 2982685
Alignment:
Q  30 gcatacactcccaaagttgtttccattggcccctttcaccacggtcaccc------ccagctccaaaacatggaacgtcacaaactcatttacttcaaag 123  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||       ||| |||||||||||||||||||| || |||||| |||||||||    
T  2982434 gcatacacccccaatgtcgtttccattggcccctttcaccacggtcacctaggcctccatctccaaaacatggaacgtcagaagctcattcacttcaaag 2982533  T
Q  124 cttttctcaaacgaaccgaggcatattgtttaaacaccttggtcaactacatagaatctatcttatctgatttcaaaggctgttattccgaaaccctacc 223  Q
    |||||||  ||||||||||||||| ||   |||||  |||||||  |||| |||| |||||||||||||||||||||  ||||||||| ||| |||||||    
T  2982534 cttttcttcaacgaaccgaggcatctt---taaacgacttggtctgctacgtagattctatcttatctgatttcaaacactgttattctgaacccctacc 2982630  T
Q  224 attttctcataatgaacttgttaagttaattttaatggattccggttttataatt 278  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  2982631 attttctcataatgaacttgttaagttaatcttaatcgattccgcttttataatt 2982685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 30 - 281
Target Start/End: Original strand, 2964050 - 2964304
Alignment:
Q  30 gcatacactcccaaagttgtttccattggcccctttcaccacggtcacccccagc------tccaaaacatggaacgtcacaaactcatttacttcaaag 123  Q
    |||||||| |||||  | |||||||| |||||||||||||||||||||||||| |      |||||||||||||||| || |||||||||||||||||||    
T  2964050 gcatacacccccaagttcgtttccatcggcccctttcaccacggtcacccccacccccagatccaaaacatggaacgacaaaaactcatttacttcaaag 2964149  T
Q  124 cttttctcaaacgaaccgaggcatattgtttaaacaccttggtcaactacatagaatctatcttatctgatttcaaaggctgttattccgaaaccctacc 223  Q
     ||||||| ||||||||||| ||  ||   |||||    ||||| ||||||||||  |||||||||||||||||||| |||||||||||||||| |||||    
T  2964150 attttctccaacgaaccgagacaactt---taaacgaaatggtctactacatagatgctatcttatctgatttcaaatgctgttattccgaaactctacc 2964246  T
Q  224 attttctcataatgaacttgttaagttaattttaatggattccggttttataattgaa 281  Q
    |||||||||| |||||||||| |||||||| ||||| ||||| |||||||||||||||    
T  2964247 attttctcatgatgaacttgtcaagttaatcttaatcgattctggttttataattgaa 2964304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 32 - 184
Target Start/End: Original strand, 2972570 - 2972720
Alignment:
Q  32 atacactcccaaagttgtttccattggcccctttcaccacggtcacccccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttctc 131  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2972570 atacactcccaaagtcgtttccattggcccctttcaccacgttcaaacccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttctc 2972669  T
Q  132 aaacgaaccgaggcatattgtttaaacaccttggtcaactacatagaatctat 184  Q
    ||| ||| || ||     ||||||||||||||||||||||| |||||||||||    
T  2972670 aaaagaaacgggg--ggatgtttaaacaccttggtcaactatatagaatctat 2972720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 2973727 - 2973829
Alignment:
Q  179 atctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggttttataatt 278  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2973727 atctatcttatctgatttcaaaggctgttattccaaaaccctatcattttctcatattgaacttgttaagttaattttaatggattccggttttataatt 2973826  T
Q  279 gaa 281  Q
    |||    
T  2973827 gaa 2973829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 48 - 278
Target Start/End: Complemental strand, 35719 - 35489
Alignment:
Q  48 gtttccattggcccctttcaccacggtcacccccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttctcaaacgaaccgaggcat 147  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||     
T  35719 gtttccattggcccctttcaccacggtcacccccagctcaaaaacatggaacgtcacaaactcatttacttcaaagattttctccaacgaaccaatgca- 35621  T
Q  148 attgtttaaacaccttggtcaactacatagaatctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctc---ataatgaacttgt 244  Q
      | ||||| || |||| ||| | ||||| | ||||||||||||||||||||| | |||||||| ||||||||| ||||| |||   || | ||||||||    
T  35620 --tctttaagcatcttgatcagcgacatatattctatcttatctgatttcaaatgttgttattcggaaaccctatcatttcctcaggatgaagaacttgt 35523  T
Q  245 taagttaattttaatggattccggttttataatt 278  Q
    ||||||||| ||||| ||||||||||||||||||    
T  35522 taagttaatcttaatcgattccggttttataatt 35489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 48 - 278
Target Start/End: Original strand, 3338767 - 3338994
Alignment:
Q  48 gtttccattggcccctttcaccacggtcacccccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttctcaaacgaaccgaggcat 147  Q
    ||||||||||||||||||||||||||| |  |||  ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  3338767 gtttccattggcccctttcaccacggtaaaacccgactctaaaacatggaacgtcacaaactcatttacttcaaagcttttctccaacgaaccgaggca- 3338865  T
Q  148 attgtttaaacaccttggtcaactacatagaatctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaa 247  Q
      ||||||||   |||||||  |||| |||| ||||||||| ||||||||||| | |||||||| |||  |||| |||||||| || || ||||||||||    
T  3338866 --tgtttaaaagacttggtcttctacgtagagtctatcttacctgatttcaaacgttgttattcggaattcctaacattttctgatgataaacttgttaa 3338963  T
Q  248 gttaattttaatggattccggttttataatt 278  Q
    |||||| ||||| ||||||||||||||||||    
T  3338964 gttaatcttaatcgattccggttttataatt 3338994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 20012216 - 20012272
Alignment:
Q  87 caaaacatggaacgtcacaaactcatttacttcaaagcttttctcaaacgaaccgag 143  Q
    |||||||||||| |||||||||||| |||||||||||| |||||| ||||| |||||    
T  20012216 caaaacatggaatgtcacaaactcagttacttcaaagcatttctccaacgatccgag 20012272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 49612977 - 49613093
Alignment:
Q  30 gcatacactcccaaagttgtttccattggcccctttcaccacggtcacccccagc------tccaaaacatggaacgtcacaaactcatttacttcaaag 123  Q
    |||||||| ||||||||  ||||||||||||| || |||||| |||||| ||| |      ||||||||||||| || ||||||||||||||||||||||    
T  49612977 gcatacacccccaaagtcatttccattggccctttccaccacagtcaccgccaccaccacctccaaaacatggagcgccacaaactcatttacttcaaag 49613076  T
Q  124 cttttctcaaacgaacc 140  Q
    |||||||| ||||||||    
T  49613077 cttttctccaacgaacc 49613093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 49618100 - 49618210
Alignment:
Q  170 ctacatagaatctatcttatctgatttcaaaggctgttattccgaaaccctaccattttctcataatgaacttgttaagttaattttaatggattccggt 269  Q
    ||||||||| || ||||||||| |||||||   || ||||||| ||||||||| |||| ||||| ||||| ||||||||||||| ||||| ||||||||     
T  49618100 ctacatagattccatcttatctcatttcaatcactcttattccaaaaccctacaatttactcatgatgaatttgttaagttaatcttaattgattccggg 49618199  T
Q  270 tttataattga 280  Q
    || ||||||||    
T  49618200 ttcataattga 49618210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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