View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_62 (Length: 287)
Name: NF0913_low_62
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 27561749 - 27561473
Alignment:
| Q |
1 |
catttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaac |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27561749 |
catttcttacaatattaaacgttttagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaac |
27561650 |
T |
|
| Q |
101 |
acagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgaatgggaaggttattcacacaaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27561649 |
acagttgaagcgatcgaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcgaaattgagtgggaaggttattcacacaaa |
27561550 |
T |
|
| Q |
201 |
ctgccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
277 |
Q |
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| T |
27561549 |
cttccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
27561473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 36668622 - 36668348
Alignment:
| Q |
1 |
catttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaac |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
36668622 |
catttcttacaatattaaatgtttcagggagaaaagatatcaaagctgagtttggtgtgatgtcttcagccttatctaaagaaatggggatgatggaaac |
36668523 |
T |
|
| Q |
101 |
acagttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcatt--cagcgaaattgaatgggaaggttattcacaca |
198 |
Q |
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| T |
36668522 |
acagttgaagcgatggaaagatgcagctcatgaagctgtatcattgcgtgcgaaagcacattcgctaagagagaaattgagtgggaaggttattcacaca |
36668423 |
T |
|
| Q |
199 |
aactgccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtc |
273 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||| |||||| |||||||| ||||||| |||||||||||| |
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| T |
36668422 |
aactgccatttcattttctttctcaccttctttgtgataggtcttttacagaaagttatctagataatttgagtc |
36668348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 158
Target Start/End: Original strand, 36672766 - 36672887
Alignment:
| Q |
38 |
tatcaaagctgagtttcgtgtgat-atcttcagctttatctaaagaaa-tggggatgatggaaacacagttgaagcgatggaaagatgcagctcttaaag |
135 |
Q |
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|||||||| |||||| |||||||| ||| | ||||||||||||| ||| | ||||||| ||| ||||||||| |||||||||||| ||||||| ||| |
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| T |
36672766 |
tatcaaagttgagttacgtgtgatgatcat-agctttatctaaaaaaaattgggatgacagaagatcagttgaagtgatggaaagatgtagctcttgaag |
36672864 |
T |
|
| Q |
136 |
ctgtagcattgcgtgagaaagca |
158 |
Q |
| |
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|||| ||||| ||||||||||| |
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| T |
36672865 |
ttgtatcattgtgtgagaaagca |
36672887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 27563382 - 27563519
Alignment:
| Q |
3 |
tttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtgat-atcttcagctttatctaaagaaat-ggggatgatggaaac |
100 |
Q |
| |
|
|||||||| ||||| | |||||||||||| | |||||||| |||||| ||||||| ||||| ||||||||||||| |||| ||||||||||||| |
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| T |
27563382 |
tttcttaccatattgcatgtttcagggagagaagatatcaact-tgagttatgtgtgatgatctt-agctttatctaaaaaaatcggggatgatggaaga |
27563479 |
T |
|
| Q |
101 |
acagttgaagcgatggaaagatgcagctcttaaagctgta |
140 |
Q |
| |
|
||||||||| ||| ||| |||||||||||| ||| |||| |
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| T |
27563480 |
gcagttgaagtgatagaaggatgcagctcttgaagttgta |
27563519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 4 - 276
Target Start/End: Original strand, 24202445 - 24202719
Alignment:
| Q |
4 |
ttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacaca |
103 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||||| |||||||||||| || ||||| ||||||||||||||||||| |||||||| |||| |
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| T |
24202445 |
ttcttacaatattaaatgtttcagggacaaaagatatcaaagttgagtttcgtgttatggcttcaactttatctaaagaaatgggaatgatggatgcaca |
24202544 |
T |
|
| Q |
104 |
gttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcatt--cagcgaaattgaatgggaaggttattcacacaaac |
201 |
Q |
| |
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|||||||||||| |||||||||| ||| |||| ||| | ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
24202545 |
gttgaagcgatgagaagatgcagcacttgaagccgtatccttgcgtgagaaagcacattcactaagagcgaaattgagtgggaaggttattcacacaaag |
24202644 |
T |
|
| Q |
202 |
tgccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgt |
276 |
Q |
| |
|
| |||||||||||||||| ||||| |||||||||| |||||| ||||| |||||||||| ||||||||||||||| |
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|
| T |
24202645 |
ttccctttcattttctttgtcaccgactttgtgataggtcttttacagcaatttatctagataatttgagtctgt |
24202719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 277
Target Start/End: Complemental strand, 29411152 - 29410876
Alignment:
| Q |
3 |
tttcttacaatattaaacgtttcagggagaaatgatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacac |
102 |
Q |
| |
|
||||||||| | ||||| ||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | | |
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|
| T |
29411152 |
tttcttacactgttaaatttttcagggagaaaagacatcaaagccgagtttcgtgtgatggcttcagctttatctaaagaaatggggatgatggacgcgc |
29411053 |
T |
|
| Q |
103 |
agttgaagcgatggaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcagcg--aaattgaatgggaaggttattcacacaaa |
200 |
Q |
| |
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|| |||||||||||||||||||||||||| |||||||| |||| ||||||||||| |||||| | || | ||||||| ||| |||||||||| || ||| |
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| T |
29411052 |
aggtgaagcgatggaaagatgcagctcttgaagctgtatcattacgtgagaaagcgcattcactaagagaaaaattgagtggaaaggttattcgcataaa |
29410953 |
T |
|
| Q |
201 |
ctgccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttatctaaataatttgagtctgtg |
277 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||| ||||||||||| |||| |
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|
| T |
29410952 |
gtaccctttcattttctttctcgcctactttgtgataagtcttttacagaaattcatcttgataatttgagtttgtg |
29410876 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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