View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_low_68 (Length: 284)

Name: NF0913_low_68
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_low_68
NF0913_low_68
[»] chr4 (13 HSPs)
chr4 (1-239)||(47749456-47749694)
chr4 (2-239)||(10090218-10090455)
chr4 (1-239)||(40596134-40596374)
chr4 (2-239)||(12159207-12159442)
chr4 (3-169)||(21654297-21654463)
chr4 (1-169)||(31848242-31848410)
chr4 (1-149)||(27141671-27141819)
chr4 (1-169)||(53180927-53181095)
chr4 (1-239)||(7401641-7401879)
chr4 (2-171)||(2211786-2211955)
chr4 (1-99)||(46914050-46914148)
chr4 (17-115)||(35394952-35395050)
chr4 (1-65)||(19409942-19410006)
[»] chr8 (15 HSPs)
chr8 (1-239)||(30470189-30470431)
chr8 (2-239)||(26748342-26748579)
chr8 (1-239)||(26631517-26631773)
chr8 (1-197)||(36913030-36913226)
chr8 (2-169)||(13817505-13817672)
chr8 (1-169)||(5214253-5214421)
chr8 (2-197)||(18028759-18028954)
chr8 (2-171)||(35101858-35102027)
chr8 (2-171)||(8449473-8449642)
chr8 (1-169)||(42861159-42861327)
chr8 (2-197)||(4624939-4625134)
chr8 (1-117)||(43617721-43617837)
chr8 (1-65)||(17745034-17745098)
chr8 (2-99)||(18210187-18210284)
chr8 (5-65)||(27392842-27392902)
[»] chr7 (9 HSPs)
chr7 (1-239)||(25217673-25217910)
chr7 (2-169)||(30630083-30630250)
chr7 (2-169)||(48985347-48985514)
chr7 (1-171)||(35028261-35028431)
chr7 (2-171)||(5813739-5813908)
chr7 (1-169)||(22194691-22194859)
chr7 (2-115)||(37889327-37889440)
chr7 (1-65)||(24793901-24793965)
chr7 (1-46)||(35192671-35192716)
[»] chr1 (9 HSPs)
chr1 (2-239)||(17786702-17786939)
chr1 (68-239)||(52930046-52930217)
chr1 (1-171)||(27629781-27629951)
chr1 (2-171)||(37419664-37419833)
chr1 (1-151)||(45242514-45242664)
chr1 (2-101)||(52930212-52930311)
chr1 (1-117)||(643345-643460)
chr1 (1-114)||(37645935-37646048)
chr1 (2-172)||(31471650-31471820)
[»] chr2 (14 HSPs)
chr2 (6-239)||(1987607-1987840)
chr2 (1-197)||(37246116-37246312)
chr2 (2-137)||(36854890-36855025)
chr2 (2-171)||(8855459-8855628)
chr2 (1-151)||(12858353-12858503)
chr2 (1-151)||(30819127-30819277)
chr2 (2-169)||(39432215-39432381)
chr2 (2-147)||(4296116-4296261)
chr2 (2-169)||(9072416-9072583)
chr2 (1-62)||(39212781-39212842)
chr2 (6-95)||(31204529-31204618)
chr2 (1-65)||(31184837-31184900)
chr2 (1-65)||(926395-926459)
chr2 (156-239)||(36854814-36854897)
[»] chr3 (19 HSPs)
chr3 (1-197)||(37409899-37410095)
chr3 (2-197)||(33751769-33751963)
chr3 (1-171)||(5844461-5844631)
chr3 (2-197)||(25449905-25450100)
chr3 (1-169)||(51436085-51436253)
chr3 (1-151)||(25787218-25787368)
chr3 (1-99)||(49822461-49822559)
chr3 (1-169)||(42597856-42598025)
chr3 (1-169)||(33934695-33934863)
chr3 (2-169)||(25829159-25829326)
chr3 (2-99)||(41894172-41894269)
chr3 (3-150)||(50020448-50020594)
chr3 (1-99)||(17469878-17469976)
chr3 (2-172)||(47147737-47147907)
chr3 (1-96)||(50034726-50034821)
chr3 (2-147)||(42602331-42602476)
chr3 (47-160)||(49822296-49822410)
chr3 (1-65)||(30688455-30688519)
chr3 (1-49)||(15493344-15493392)
[»] chr5 (8 HSPs)
chr5 (1-184)||(25033643-25033826)
chr5 (1-197)||(8175783-8175979)
chr5 (1-197)||(41263892-41264088)
chr5 (1-169)||(4580467-4580635)
chr5 (2-160)||(31011532-31011690)
chr5 (1-152)||(41152344-41152495)
chr5 (1-96)||(21368714-21368809)
chr5 (2-65)||(7827574-7827637)
[»] chr6 (7 HSPs)
chr6 (1-169)||(29951522-29951690)
chr6 (1-171)||(34328863-34329033)
chr6 (1-151)||(635144-635294)
chr6 (1-169)||(17957793-17957961)
chr6 (1-149)||(2503807-2503955)
chr6 (2-169)||(6376924-6377091)
chr6 (1-117)||(198284-198400)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 47749694 - 47749456
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  47749694 aaaattaatttacaacgaaataattaaggtcaaattattaaaatgataagaatccggacaaccaattaaaacacgccacgtgtccctatctatccaaaac 47749595  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcatccg 200  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  47749594 gtgttttctctctccgccttctgaacagtcacgcgccttatcggcgcgtgtgatgcacgtgcccgttttcaagcaatagcagcgcgccgcgtggcatccg 47749495  T
Q  201 tgaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
    ||||   ||||||||||||||||||||||||||||||||    
T  47749494 tgacatcattcaattgtgttgaatgcattcatcctctct 47749456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 10090218 - 10090455
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  10090218 aaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtccctatctattcaaaacg 10090317  T
Q  102 cgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcatccgt 201  Q
    | |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||| |    
T  10090318 ctttttctctctccgccttctgaacagtcacgcgccctgtcagcgcgtgtgatgcacgcgcccattttcaagcaatagcagtgcgccgcgtggcatccat 10090417  T
Q  202 gaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  10090418 gacagtattcaattgtgttgaatgcattcatcctctct 10090455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40596374 - 40596134
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  40596374 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccgaacaacaaattaaaacgccccacgtgtccctatctatccaaaac 40596275  T
Q  101 gcgttttctctctc--cgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcatc 198  Q
    | ||||||||||||  | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||    
T  40596274 gtgttttctctctctccaccttctgaacagtcacgcgccctgtcggcgcgtgtgatgcacgcgcccgttttcaagcaatagcagcgcgccgtgtggcatc 40596175  T
Q  199 cgtgaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  40596174 cgtgacagtattcaattgtgttgaatgcattcatcctctct 40596134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 12159207 - 12159442
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  12159207 aaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacaaccaattaaaacgcaccacgtgtccctatctatccaaaacg 12159306  T
Q  102 cgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcatccgt 201  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||  |     
T  12159307 cgttttctctctctgccttctgaacagtcacacgccctgtcggcacgtgtgatgcacacgcccgttttcaagcaatagcagcgtgccgcgtggcat--ga 12159404  T
Q  202 gaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
    |||  |||||||||||||||||||||||||||||||||    
T  12159405 gacaatattcaattgtgttgaatgcattcatcctctct 12159442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 169
Target Start/End: Complemental strand, 21654463 - 21654297
Alignment:
Q  3 aattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacgc 102  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||  |    
T  21654463 aattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtccttatctatccaaaaacc 21654364  T
Q  103 gttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
    | ||||||||||||  | ||||| |  |||||||||||||||||||||||||||||||| ||||||||    
T  21654363 g-tttctctctccgagcctctgaccgctcacgcgccttgtcggcgcgtgtgatgcacgcgcccgtttt 21654297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 31848410 - 31848242
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||| |||||||||||||     
T  31848410 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataaaaattcggacaaccaattaaaacgcgccacctgtccttatctatccaaaaa 31848311  T
Q  101 gcgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
     || ||||||||| ||| | ||||| |  |||| ||||||||||||||||||||| |||||  |||||||    
T  31848310 ccg-tttctctcttcgcatctctgaccgttcacacgccttgtcggcgcgtgtgatacacgcgtccgtttt 31848242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 27141819 - 27141671
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||     
T  27141819 aaaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatcctgacaaccaattaaaacgtgccacgtgtccttatctatccaaaaa 27141720  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgt 149  Q
     | ||||||||||||||  |||| ||  ||||||||| |||||||||||    
T  27141719 tcattttctctctccgcgctctgcacgctcacgcgccctgtcggcgcgt 27141671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 53181095 - 53180927
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||||||||     
T  53181095 aaaattaatttacaacgaaataattcaggtcaaattattaaaatgataagaatccggacagccaattaaaacgcgccacgtgtcattatctatccaaaaa 53180996  T
Q  101 gcgttttctctctccgc-cttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
    ||   |||||||||||| | |||||    |||||||||||||| |||||||| | |||||| ||||||||    
T  53180995 gc-cattctctctccgcacgtctgacgcatcacgcgccttgtctgcgcgtgtaacgcacgcgcccgtttt 53180927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 7401641 - 7401879
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||| ||||||||| ||||||| ||||| ||||| |||||||||||||     
T  7401641 aaaattaatttacaacgaaataattgaggttaaattatgaaaataataagaatcctgacaaccaattaaaacgtgccacatgtccttatctatccaaaaa 7401740  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggc-atcc 199  Q
     | ||||||||||||||  |||| ||  ||||||||| |||||||||| ||    ||||| || |||||||   ||| |||||| ||| |||||| ||||    
T  7401741 tcattttctctctccgcgctctgcacgctcacgcgccctgtcggcgcgagttgcacacgcgccagttttcagcgaatggcagcgcgccacgtggcaatcc 7401840  T
Q  200 gtgaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
    | | | | |||||||||||||||||  |||||||||||||    
T  7401841 g-gtctgcattcaattgtgttgaattgattcatcctctct 7401879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 2211955 - 2211786
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    ||||||||||| |||||||||| | |||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||| |    
T  2211955 aaattaatttataacgaaataattaaggttaaattatgaaaatgataagaatccggacaaccaattaaaacgcgacacgtgtccttatctttccaaaatg 2211856  T
Q  102 cgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttca 171  Q
    || |||||||||||| || ||||| |  ||||||||| |||||||||||||| | ||||| || |||||||    
T  2211855 cg-tttctctctccgaccgtctgacctctcacgcgccctgtcggcgcgtgtgttccacgcgccagttttca 2211786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 46914148 - 46914050
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaa 99  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  46914148 aaaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtcattatctatccaaaa 46914050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 35394952 - 35395050
Alignment:
Q  17 gaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacgcgttttctctctcc 115  Q
    |||||||  |||||| |||||||||||||||||||||||||||||||||  |||||||  ||||||||| ||||||||||||   ||||||||||||||    
T  35394952 gaaataatcgaggtccaattattaaaatgataagaatccggacaaccaatcaaaacgcagcacgtgtccttatctatccaaatttcgttttctctctcc 35395050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19409942 - 19410006
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaa 65  Q
    |||| ||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  19409942 aaaaataatttaaaacgaaataattgaggtccaattattaaaatgataagaatccggacaaccaa 19410006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30470431 - 30470189
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  30470431 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacaaccaattaaaacgccccacgtgtccctatctatccaaaac 30470332  T
Q  101 gcgttttctctctc----cgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggca 196  Q
     |||||||||||||    | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  30470331 acgttttctctctctctccaccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcgcccgttttcaagcaatagcagcgcgccgcgtggca 30470232  T
Q  197 tccgtgaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  30470231 tccgtgacaatattcaattgtgttgaatgcattcatcctctct 30470189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 26748579 - 26748342
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||| ||||||||||||| |||| | | ||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||||||||||||     
T  26748579 aaattaatgtacaacgaaataattgagataatattattaaaatgataagaatttggacaaccaattaaaacacgccacgtgtccctatctatccaaaact 26748480  T
Q  102 cgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcatccgt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| |||     
T  26748479 cgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcgcccgttttcaagcaatagcagcacgccgcgtggcaaccgg 26748380  T
Q  202 gaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
    |||   ||||||||||||||||||||||||||||||||    
T  26748379 gacatgattcaattgtgttgaatgcattcatcctctct 26748342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 26631773 - 26631517
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  26631773 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacaaccaattaaaacgcgccacgtgcccctatctatccaaaac 26631674  T
Q  101 gcgttttctc--tctccgccttctgaacagtcacgcgccttgt----------------cggcgcgtgtgatgcacgcacccgttttcaagcaatagcag 182  Q
    ||||||||||  ||||||||||||||||||||||||||||| |                ||| |||||||||||||||||||||||||||||||||||||    
T  26631673 gcgttttctctctctccgccttctgaacagtcacgcgccttatcggtgcgtgtgatgcacggggcgtgtgatgcacgcacccgttttcaagcaatagcag 26631574  T
Q  183 cgtgccgcgtggcatccgtgaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26631573 cgcgccgcgtggcatccgtgacagtattcaattgtgttgaatgcattcatcctctct 26631517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 36913030 - 36913226
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36913030 aaaattaatttacaacgaaataattgaggtccaattgttaaaattataagaatccggacaaccaattaaaacgcgccacgtgtccctatctatccaaaac 36913129  T
Q  101 gcgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcat 197  Q
     || ||||||||||||| | |||||||| ||||||||| ||||||| |||||| ||||||| ||   |||||  |||| |||||| ||||||||||||    
T  36913130 tcg-tttctctctccgcgtctctgaacactcacgcgccctgtcggcacgtgtgctgcacgcgccatctttcagccaattgcagcgcgccgcgtggcat 36913226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 169
Target Start/End: Original strand, 13817505 - 13817672
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||||      
T  13817505 aaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaattcggacaaccaattaaaacgcgccacatgtccttatctatccaaaaac 13817604  T
Q  102 cgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
    || |||||||||||| || ||||| |  |||||||||||||| ||||||||||||||||| ||||||||    
T  13817605 cg-tttctctctccgaccctctgaccgttcacgcgccttgtcagcgcgtgtgatgcacgcgcccgtttt 13817672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 5214253 - 5214421
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||     
T  5214253 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtcattatctatccaaaaa 5214352  T
Q  101 gcgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
    ||   ||||||||||| || |||||    |||||||||||||||||| ||||||||||||| ||||||||    
T  5214353 gc-aattctctctccgaccctctgactgctcacgcgccttgtcggcgtgtgtgatgcacgcgcccgtttt 5214421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 18028954 - 18028759
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||      
T  18028954 aaattaatttacaacgaaataattaaggtccaattattaaaattataagaatccggacaaccaattaaaacgcgccacgtgtccctatctatccaaaagt 18028855  T
Q  102 cgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcat 197  Q
    || ||||||||||||| | | ||| || ||||||||| |||||||||||||| ||||||| ||   |||||  |||| |||||| ||||||||||||    
T  18028854 cg-tttctctctccgcatctttgaccactcacgcgccctgtcggcgcgtgtgctgcacgcgccatctttcagccaattgcagcgcgccgcgtggcat 18028759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 35101858 - 35102027
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |    
T  35101858 aaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtccttatctttccaaaatg 35101957  T
Q  102 cgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttca 171  Q
    || |||||||||||| || ||||| |  ||||||||| |||||||||||||| ||||||| || |||||||    
T  35101958 cg-tttctctctccgaccgtctgacctctcacgcgccctgtcggcgcgtgtgttgcacgcgccagttttca 35102027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 8449642 - 8449473
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||| |    
T  8449642 aaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatctggacaaccaattaaaacgcgccacgtgtccttatctttccaaaatg 8449543  T
Q  102 cgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttca 171  Q
    || |||||||||||| || ||||| |  ||||||||| |||||||| ||||| ||||||| || |||||||    
T  8449542 cg-tttctctctccgaccgtctgacctctcacgcgccctgtcggcgtgtgtgttgcacgcgccagttttca 8449473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 42861159 - 42861327
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||| ||||| ||||||| ||||| |||||||||||||     
T  42861159 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataaaaatccagataaccaattaaaatgcgccacctgtccttatctatccaaaaa 42861258  T
Q  101 gcgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
     || ||||||||||||| | ||||| |  |||||||||||||||||||||||||| ||||| ||| ||||    
T  42861259 ccg-tttctctctccgcatctctgaccgttcacgcgccttgtcggcgcgtgtgatacacgcgcccatttt 42861327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 4625134 - 4624939
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||| || |||| |||||      
T  4625134 aaattaatttacaacgaaataattgaggtccaattattaaaattataagaatccggacaaccaattaaaacgcgccacgtgtccatacctattcaaaagt 4625035  T
Q  102 cgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcat 197  Q
    || ||||||||||||| | ||||| || ||| ||||| |  ||||||||||| | ||||| ||  ||||||  |||| |||||| ||||||||||||    
T  4625034 cg-tttctctctccgcgtctctgaccactcatgcgccctaccggcgcgtgtgctacacgcgccatttttcagccaattgcagcgcgccgcgtggcat 4624939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 43617837 - 43617721
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||     
T  43617837 aaaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacaaccaattaaaacgtgccacgtgtccttatctatccaaaaa 43617738  T
Q  101 gcgttttctctctccgc 117  Q
       ||||||||||||||    
T  43617737 ttattttctctctccgc 43617721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 17745034 - 17745098
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaa 65  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  17745034 aaaattaatttacaacgaaataactgaggtccaattattaaaatgataagaatccggacaaccaa 17745098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 18210284 - 18210187
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaa 99  Q
    |||||||||||||||||||||||||||||   |||| ||||||||||| ||| |||| ||||||  ||||||| |||||||| |||||||||||||||    
T  18210284 aaattaatttacaacgaaataaatgaggttccattaataaaatgataaaaattcggaaaaccaatcaaaacgcaccacgtgttcctatctatccaaaa 18210187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 27392842 - 27392902
Alignment:
Q  5 ttaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaa 65  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||    
T  27392842 ttaatttacaacgaaataattgaggtccaattattaaaatgataagattccggacagccaa 27392902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 25217910 - 25217673
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25217910 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtccctatctatccaaaac 25217811  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcatccg 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| ||||||||||| |||    
T  25217810 tcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgc-gccgttttcaagtaatagcagcgcgccgcgtggcaaccg 25217712  T
Q  201 tgaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
     ||  | ||||||||||||||||||||||||||||||||    
T  25217711 ggagaggattcaattgtgttgaatgcattcatcctctct 25217673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 30630250 - 30630083
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||      
T  30630250 aaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacaaccaattaaaacgcaccacgtgtccttatctatccaaaaac 30630151  T
Q  102 cgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
    || ||||||||||||  | ||||| |  |||||||||||||||||||||||||||||||| ||||||||    
T  30630150 cg-tttctctctccgagcctctgaccgctcacgcgccttgtcggcgcgtgtgatgcacgcgcccgtttt 30630083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 169
Target Start/End: Original strand, 48985347 - 48985514
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||| || |||||||| ||||||||||||| ||||| |||||||||||||      
T  48985347 aaattaatttacaacgaaataattgaggtcaaattattaaaatgataaaaattcgaacaaccaattaaaacgcgccacctgtccttatctatccaaaaac 48985446  T
Q  102 cgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
    || ||||||||||||| | ||||| |  |||||||||||||||||||||||||| ||||| ||||||||    
T  48985447 cg-tttctctctccgcatctctgaccgttcacgcgccttgtcggcgcgtgtgatacacgcgcccgtttt 48985514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 35028431 - 35028261
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||     
T  35028431 aaaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtccttatatttccaaaat 35028332  T
Q  101 gcgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttca 171  Q
    | | |||||||||||| || ||||| |  ||||||||| |||||||||||||| ||||||| || |||||||    
T  35028331 gtg-tttctctctccgaccgtctgacctctcacgcgccctgtcggcgcgtgtgttgcacgcgccagttttca 35028261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 5813739 - 5813908
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |    
T  5813739 aaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtccttatctttccaaaatg 5813838  T
Q  102 cgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttca 171  Q
    || |||||||||||| || |||||    |||| |||| |||||||||||||| ||||||| || |||||||    
T  5813839 cg-tttctctctccgaccgtctgacatctcacacgccctgtcggcgcgtgtgttgcacgcgccagttttca 5813908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 22194691 - 22194859
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    |||||||||||||||| |||||| ||||||  |||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||     
T  22194691 aaaattaatttacaacaaaataattgaggtacaattattaaaatgataagaatctggacaaccaattaaaacgcgccacgtgtccttatctatccaaaaa 22194790  T
Q  101 gcgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
     || ||||||||||||  | ||||| |  ||||||||| | ||||| |||||| ||||||| ||||||||    
T  22194791 ccg-tttctctctccgaacctctgaccgctcacgcgccctatcggcacgtgtgttgcacgcgcccgtttt 22194859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 37889327 - 37889440
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||  |||||||  ||||||||| ||||||||||||       
T  37889327 aaattaatttacaatgaaataattgaggtccaattattaaaatgataagaatccagacaaccaatcaaaacgcaacacgtgtccatatctatccaaattt 37889426  T
Q  102 cgttttctctctcc 115  Q
    ||||||||||||||    
T  37889427 cgttttctctctcc 37889440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24793901 - 24793965
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaa 65  Q
    ||||||||||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||||    
T  24793901 aaaattaatttacaacgaaataattgaggtttaataattaaaatgataagaatccggacaaccaa 24793965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35192716 - 35192671
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatga 46  Q
    ||||||||||||||| ||| ||| |||| |||||||||||||||||    
T  35192716 aaaattaatttacaatgaattaattgagttcaaattattaaaatga 35192671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 17786702 - 17786939
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||  | |||||||| |||||||||||||||||||||||||||||||||||    
T  17786702 aaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaattagcacaaccaattaaaacgcgccacgtgtccctatctatccaaaacg 17786801  T
Q  102 cgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcatccgt 201  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  17786802 cattttctctctccgccttctgaacagtcacgcgccctgtcggcgcgtgtgatgcacgcacccgttttcaaacaatagcagctcgccgcgtggcatccgt 17786901  T
Q  202 gaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
    |||  |||| ||||||||||||||| ||| ||||||||    
T  17786902 gacaatattaaattgtgttgaatgcgttcgtcctctct 17786939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 52930217 - 52930046
Alignment:
Q  68 aaaacgcgccacgtgtccctatctatccaaaacgcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtt 167  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  52930217 aaaacgtgccacgtgtccctatctatccaaaacgcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacacgcccgtt 52930118  T
Q  168 ttcaagcaatagcagcgtgccgcgtggcatccgtgaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
    |||||||||||||| || |||||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  52930117 ttcaagcaatagcaacgcgccgcgtggcatccgtgacaatattcaattgtgttgaatgcgttcatcctctct 52930046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 27629951 - 27629781
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||     
T  27629951 aaaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtccttatctttccaaaat 27629852  T
Q  101 gcgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttca 171  Q
    ||| |||||||||||| || ||||| |  ||||||||| |||||||||||||| ||||||| || |||||||    
T  27629851 gcg-tttctctctccgaccgtctgacctctcacgcgccctgtcggcgcgtgtgttgcacgcgccagttttca 27629781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 37419833 - 37419664
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |    
T  37419833 aaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtccttatctttccaaaatg 37419734  T
Q  102 cgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttca 171  Q
    || |||||||||||| || ||||| |  ||||||||| |||||||||||||| ||||||| || |||||||    
T  37419733 cg-tttctctctccgaccgtctgacctctcacgcgccctgtcggcgcgtgtgttgcacgcgccagttttca 37419664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 45242514 - 45242664
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||| || ||||     
T  45242514 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgtgccacgtgtccttatctttcaaaaaa 45242613  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgt 151  Q
     | ||||||||||||||  |||| ||  ||||||||| |||||||||||||    
T  45242614 tcattttctctctccgcgctctgcacgctcacgcgccctgtcggcgcgtgt 45242664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 52930311 - 52930212
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||||||||    
T  52930311 aaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaattcgaacaaccaattaaaacgcgtcacgtgtccctatctatccaaaacg 52930212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 643460 - 643345
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||| |||||||||||||     
T  643460 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataaaaattcggacaaccaattaaaacgcgccacatgtccttatctatccaaaaa 643361  T
Q  101 gcgttttctctctccgc 117  Q
     || |||||||||||||    
T  643360 ccg-tttctctctccgc 643345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 37646048 - 37645935
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||     
T  37646048 aaaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacaaccaattaaaacgtgtcacgtgtccttatctatccaaaaa 37645949  T
Q  101 gcgttttctctctc 114  Q
     | |||||||||||    
T  37645948 tcattttctctctc 37645935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 31471650 - 31471820
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |||| ||||||| ||||||||||  |||||||||||||      
T  31471650 aaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacagccaattaaaacgtgccacgtgtcattatctatccaaaa-a 31471748  T
Q  102 cgttttctctctccgc-cttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaa 172  Q
       ||||||||||||| | |||||   ||||||||||||||| |||||||| | |||||| || ||||||||    
T  31471749 atctttctctctccgcacgtctgacgcgtcacgcgccttgtctgcgcgtgtaacgcacgcgccagttttcaa 31471820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 1987607 - 1987840
Alignment:
Q  6 taatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacgcgtt 105  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |||||||||  |||||||||| ||||||||||||  |||    
T  1987607 taatttacaacgaaataattgaggtccaattattaaaatgaaaagaatccggacaaccaattaaaacgcgttacgtgtccctgtctatccaaaacttgtt 1987706  T
Q  106 ttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcatccgtgacc 205  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||| |||     
T  1987707 ttctctctccgccttctgaacagtcacgcaccttgtcggcgcgtgtgatgcacgcgcccgttttcaagcaattgcagcgcgccgcgtggcaaccgggaca 1987806  T
Q  206 gtattcaattgtgttgaatgcattcatcctctct 239  Q
    | ||||||||||||||||||||||||||||||||    
T  1987807 ggattcaattgtgttgaatgcattcatcctctct 1987840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 37246116 - 37246312
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37246116 aaaattaatttacaacgaaataattgaggtccaattgttaaaattataagaatccggacaaccaattaaaacgcgccacgtgtccctatctatccaaaac 37246215  T
Q  101 gcgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcat 197  Q
     || ||||||||||||| | |||||||| ||||||||| |||||||||||||| ||||||| ||   |||||  |||| |||||| ||||||||||||    
T  37246216 tcg-tttctctctccgcgtctctgaacactcacgcgccctgtcggcgcgtgtgctgcacgcgccatctttcagccaattgcagcgcgccgcgtggcat 37246312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 36855025 - 36854890
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||||| ||||| |  ||| |||||||||||||||||||||     
T  36855025 aaattaatttacaacaaaataattgaggtccaattattaaaatgataagaatccgaacaaccaattaaaatgtcccatgtgtccctatctatccaaaact 36854926  T
Q  102 cgttttctctctccgccttctgaacagtcacgcgcc 137  Q
    |||||||||||||| |||||||||||||||||||||    
T  36854925 cgttttctctctccaccttctgaacagtcacgcgcc 36854890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 8855459 - 8855628
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||| |||||||||||| |||||| ||||| ||||||| |    
T  8855459 aaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccgaacaaccaattaaaacgcgccatgtgtccttatctttccaaaatg 8855558  T
Q  102 cgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttca 171  Q
    || |||||||||||| || ||||| |  ||||||||| |||||||||||||| ||||||| || |||||||    
T  8855559 cg-tttctctctccgaccgtctgacctctcacgcgccctgtcggcgcgtgtgttgcacgcgccagttttca 8855628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 12858353 - 12858503
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||| || ||||     
T  12858353 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgtgccacgtgtccttatctttcaaaaaa 12858452  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgt 151  Q
     | ||||||||||||||  |||| ||  ||||||||| |||||||||||||    
T  12858453 tcattttctctctccgcgctctgcacgctcacgcgccctgtcggcgcgtgt 12858503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 30819277 - 30819127
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||| || ||||     
T  30819277 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgtgccacgtgtccttatctttcaaaaaa 30819178  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgt 151  Q
     | ||||||||||||||  |||| ||  ||||||||| |||||||||||||    
T  30819177 tcattttctctctccgcgctctgcacgctcacgcgccctgtcggcgcgtgt 30819127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 39432381 - 39432215
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| |||||||| ||||| | ||||||||| ||||||||||||||||     
T  39432381 aaattaatttacaacgaaataattgaggtccaattattaaaaagataagaatccgaacaaccaattaaaatgtgccacgtgt-cctatctatccaaaact 39432283  T
Q  102 cgttttctctctccgc-cttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
    || ||||||||||||| | ||||| ||| |||||||| |||| | ||||||||||||||| || |||||    
T  39432282 cg-tttctctctccgcgcctctgaccagccacgcgccatgtctgtgcgtgtgatgcacgcgcctgtttt 39432215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 4296261 - 4296116
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||| ||||||| | ||||||||| ||| |||||||||      
T  4296261 aaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccgaacaaccaattaaaacgtgtcacgtgtccttatttatccaaaaat 4296162  T
Q  102 cgttttctctctccgccttctgaacagtcacgcgccttgtcggcgc 147  Q
    | ||||||||||||||  |||| ||  ||||||||| |||||||||    
T  4296161 cattttctctctccgcgctctgcacgctcacgcgccctgtcggcgc 4296116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 9072583 - 9072416
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| |||| ||||| ||||||||||||  ||||||||||||| |    
T  9072583 aaattaatttacaacgaaataattgaggtcaaattattaaaatgaaaagaatccagacagccaattaaaatgcgccacgtgtcattatctatccaaaaag 9072484  T
Q  102 cgttttctctctccgc-cttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
        |||||||||||| | |||||   ||||||||||||||| |||||||| | |||||| ||||||||    
T  9072483 -tcattctctctccgcacgtctgacgcgtcacgcgccttgtctgcgcgtgtaacgcacgcgcccgtttt 9072416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39212781 - 39212842
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaac 62  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  39212781 aaaattaatttacaacgaaataattgaggtctaattattaaaatgataagaatctggacaac 39212842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 31204618 - 31204529
Alignment:
Q  6 taatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatcc 95  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||  |||||    || ||||||||||||||||    
T  31204618 taatttacaacgaaataattgaggtccaattattaaaatgataagaattcgaacaaccaatcaaaactgaacatgtgtccctatctatcc 31204529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31184900 - 31184837
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaa 65  Q
    |||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  31184900 aaaaataatttacaacgaaatat-tgaggtccaattattaaaatgataagaatccggacaaccaa 31184837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 926459 - 926395
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaa 65  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||| |||||||  ||||||||||    
T  926459 aaaattaatttaaaacgaaataattgaggtccaattattaaaatggtaagaatgtggacaaccaa 926395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 36854897 - 36854814
Alignment:
Q  156 cacgcacccgttttcaagcaatagcagcgtgccgcgtggcatccgtgaccgtattcaattgtgttgaatgcattcatcctctct 239  Q
    ||||| |||||||||||||||| |||||| ||||||||||| |||  |  |  ||||||||| |||||||||||||||||||||    
T  36854897 cacgcgcccgttttcaagcaattgcagcgcgccgcgtggcaaccggaataggtttcaattgtattgaatgcattcatcctctct 36854814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 37410095 - 37409899
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37410095 aaaattaatttacaacgaaataattgaggtccaattattaaaattataagaatccggacaaccaattaaaacgcgccacgtgtccctatctatccaaaac 37409996  T
Q  101 gcgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcat 197  Q
     || ||||||||||||| | |||||||| ||||||||| |||||||||||||| ||||||| ||   |||||  |||| |||||| ||||||||||||    
T  37409995 tcg-tttctctctccgcgtctctgaacactcacgcgccctgtcggcgcgtgtgctgcacgcgccatctttcagccaattgcagcgcgccgcgtggcat 37409899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 33751769 - 33751963
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| ||||     
T  33751769 aaattaatttacaacgaaataattgaggtccaattattaaaatgataagaa-ccggacaaccaattaaaacacgccacgtgtccctatctatcctaaact 33751867  T
Q  102 cgttttctctctccgc-cttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcat 197  Q
    || ||||||||||||| | |||||||| ||| ||||| ||||||| |||||| ||||||| || |||||||  |||| |||||| ||||||||||||    
T  33751868 cg-tttctctctccgcgcctctgaacactcatgcgccctgtcggcacgtgtgttgcacgcgccagttttcagccaattgcagcgcgccgcgtggcat 33751963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 5844631 - 5844461
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||     
T  5844631 aaaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtccttatctttccaaaat 5844532  T
Q  101 gcgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttca 171  Q
    ||| |||||||||||| || ||||| |  ||||||||| |||||||||||||| ||||||| || |||||||    
T  5844531 gcg-tttctctctccgaccgtctgacctctcacgcgccctgtcggcgcgtgtgttgcacgcgccagttttca 5844461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 25450100 - 25449905
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||      
T  25450100 aaattaatttacaacgaaataattgaggtccaattattaaaattataagaatccggacaaccaattaaaacgcgccatgtgtccctatctatccaaaagt 25450001  T
Q  102 cgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcat 197  Q
    || ||||||||||||| | ||||| || ||||||||| ||||||||| |||| ||||||| ||   |||||  |||| | | |||||||||||||||    
T  25450000 cg-tttctctctccgcgtctctgaccactcacgcgccctgtcggcgcatgtgctgcacgcgccatctttcagccaattgtatcgtgccgcgtggcat 25449905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 51436085 - 51436253
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||  |||||||||||||     
T  51436085 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatctggacatccaattaaaacgcgccacgtgtcattatctatccaaaaa 51436184  T
Q  101 gcgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
    ||   ||||||||||| || |||||    ||||||||||||| |||||||||||||||||| ||||||||    
T  51436185 gc-aattctctctccgaccctctgactgctcacgcgccttgttggcgcgtgtgatgcacgcgcccgtttt 51436253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 25787368 - 25787218
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||| || ||||     
T  25787368 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgtgccacgtgtccttatctttcaaaaaa 25787269  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgt 151  Q
     | ||||||||||||||  |||| ||  ||||||||| |||||||||||||    
T  25787268 tcattttctctctccgcgctctgcacgctcacgcgccctgtcggcgcgtgt 25787218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 49822559 - 49822461
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaa 99  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  49822559 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacaaccaattaaaacgcgccacgtgtccttatctatccaaaa 49822461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 42598025 - 42597856
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||||||||     
T  42598025 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgcgccacgtgtcattatctatccaaaaa 42597926  T
Q  101 gcgttttctctctccgc-cttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
         |||||||||||| | |||||   ||||||||||||||| |||||||| | |||||| ||||||||    
T  42597925 agtcattctctctccgcacgtctgacgcgtcacgcgccttgtctgcgcgtgtaacgcacgcgcccgtttt 42597856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 33934863 - 33934695
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||     
T  33934863 aaaattaatttacaacgaaataattgaggtacaattattaaaatgataagaattcggacaaccaattagaacgcgccacgtgtccttatctatccaaaaa 33934764  T
Q  101 gcgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
     || |||||| |||||  | ||||| |  ||||||||| |||||||||||||| ||||||| ||||||||    
T  33934763 ccg-tttctcactccgaacctctgaccgctcacgcgccctgtcggcgcgtgtgttgcacgcgcccgtttt 33934695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 25829326 - 25829159
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  ||||||||||||| |    
T  25829326 aaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgcgccacgtgtcattatctatccaaaaag 25829227  T
Q  102 cgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
        |||||||||||| | |||||    |||||||||||||| |||||||| | |||||| ||||||||    
T  25829226 -tcattctctctccgcatgtctgacgcatcacgcgccttgtctgcgcgtgtaacgcacgcgcccgtttt 25829159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 41894172 - 41894269
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaa 99  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||||||||    
T  41894172 aaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgcgccacgtgtcattatctatccaaaa 41894269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 50020448 - 50020594
Alignment:
Q  3 aattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacgc 102  Q
    ||||||||||||||||| ||| |||| || ||||||||||||||||||||| | |||| ||||   |||||| |||||||||| |||||||||||||  |    
T  50020448 aattaatttacaacgaa-taattgagatccaattattaaaatgataagaattcagacagccaatccaaacgcaccacgtgtccttatctatccaaaattc 50020546  T
Q  103 gttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtg 150  Q
     ||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  50020547 attttctctctccgccctctgcacactcacgcgccttgtcggcgcgtg 50020594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 17469878 - 17469976
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaa 99  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| || |||||||||||||||  |||||||||||||    
T  17469878 aaaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacaaccaattataacgcgccacgtgtcattatctatccaaaa 17469976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 47147737 - 47147907
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||  ||| ||||||| ||||||||||  |||||||||||||      
T  47147737 aaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacagtcaattaaaacgtgccacgtgtcattatctatccaaaa-a 47147835  T
Q  102 cgttttctctctccgc-cttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaa 172  Q
       ||||||||||||| | |||||   ||||||||||||||| |||||||| | |||||| || ||||||||    
T  47147836 atctttctctctccgcacgtctgacgcgtcacgcgccttgtctgcgcgtgtaacgcacgcgccagttttcaa 47147907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 50034726 - 50034821
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatcca 96  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||  ||||||||||  |||||    ||||||||||||||||||||    
T  50034726 aaaattaatttacaacgaaataattgaggtccaattattaaaatgataagaatatggacaaccaatcaaaactatgcacgtgtccctatctatcca 50034821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 42602331 - 42602476
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||| ||||   |||||| ||||||||   |||| ||||||||      
T  42602331 aaattaatttacaacgaaataattgatgtctaattattaaaatgataagaattcggacagccaatccaaacgcaccacgtgttattatccatccaaaatt 42602430  T
Q  102 cgttttctctctccgccttctgaacagtcacgcgccttgtcggcgc 147  Q
    | |||||||| |||  |  ||| ||| |||||||||||||||||||    
T  42602431 cattttctctatccagcccctgcacactcacgcgccttgtcggcgc 42602476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 49822410 - 49822296
Alignment:
Q  47 taagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacgcgttttctctctccg-ccttctgaacagtcacgcgccttgtcggc 145  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||||||||||     |||||||||||| || |||||    ||||||||| |||||||    
T  49822410 taagaatctggacaaccaattaaaacgcgccacgtgtccttatctatccaaaaaatcgtttctctctccgaccctctgacggttcacgcgccctgtcggc 49822311  T
Q  146 gcgtgtgatgcacgc 160  Q
    |||||||||||||||    
T  49822310 gcgtgtgatgcacgc 49822296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30688519 - 30688455
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaa 65  Q
    |||||||||||  || ||||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  30688519 aaaattaattttaaaagaaataattgaggtccaattattaaaatgataagaatctggacaaccaa 30688455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15493392 - 15493344
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataa 49  Q
    ||||||||||| ||| ||||||| |||| ||||||||||||||||||||    
T  15493392 aaaattaatttgcaatgaaataattgagttcaaattattaaaatgataa 15493344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 25033643 - 25033826
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||     
T  25033643 aaaattaatttacaacgaaataattgaggtccaattattaaaatgataagaatccggacaaccaattaaaacgcgccacgcgtccctatctatccaaaat 25033742  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcg 184  Q
     |||||||| |||||||| |||| |||  |||||||| |||||| ||||||| | ||||| || |||||||| |||| ||||||    
T  25033743 tcgttttctttctccgccctctgcacacacacgcgccctgtcggtgcgtgtgctacacgcgccagttttcaaccaattgcagcg 25033826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 8175979 - 8175783
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  8175979 aaaattaatttacaacgaaataattgaggtccaattattaaaattataagaatccggacaaccaattaaaacgcgccacgtgtccccatctatccaaaac 8175880  T
Q  101 gcgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcat 197  Q
     || ||||||||||||| | |||||||| ||||||||| ||||||||| |||| ||||||| ||   |||||  |||| |||||| ||||||||||||    
T  8175879 tcg-tttctctctccgcgtctctgaacactcacgcgccctgtcggcgcatgtgctgcacgcgccatctttcagccaattgcagcgcgccgcgtggcat 8175783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 41263892 - 41264088
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||     
T  41263892 aaaattaatttacaacgaaataattgaggtccaattattaaaattataagaatccggacaaccaattaaaacgcgccacgtgtccctatatatccaaaag 41263991  T
Q  101 gcgttttctctctccgcct-tctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttcaagcaatagcagcgtgccgcgtggcat 197  Q
     || ||||||||||||| | ||||| || ||||||||| |||||||||||||| ||||||| ||  ||||||  |||| |||||| ||||||||||||    
T  41263992 tcg-tttctctctccgcgtctctgaccactcacgcgccctgtcggcgcgtgtgctgcacgcgccatttttcagccaattgcagcgcgccgcgtggcat 41264088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 4580467 - 4580635
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||||||||     
T  4580467 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgcgccacgtgtcattatctatccaaaaa 4580566  T
Q  101 gcgttttctctctccgc-cttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
    |    |||||||||||| | |||||   ||||||||||||||| |||||||| | |||||| ||||||||    
T  4580567 g-tcattctctctccgcacgtctgacgcgtcacgcgccttgtctgcgcgtgtaacgcacgcgcccgtttt 4580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 31011690 - 31011532
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||||||||||      
T  31011690 aaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgtgccacgtgtcactatctatccaaaa-a 31011592  T
Q  102 cgttttctctctccgc-cttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgc 160  Q
       ||||||||||||| | |||||   ||||||||||||||| |||||||| | ||||||    
T  31011591 atctttctctctccgcacgtctgacgcgtcacgcgccttgtctgcgcgtgtaacgcacgc 31011532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 41152495 - 41152344
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||    ||| | |||||||||| |||||||||||||     
T  41152495 aaaattaatttacaacgaaataattgaggtccaattattaaaatgataagaatccgaacaaccaatcctaacacaccacgtgtccttatctatccaaaat 41152396  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgtg 152  Q
     | ||||||||||||| | |||| |    |||||||||||||||||||||||    
T  41152395 tcattttctctctccgtcctctgcagccgcacgcgccttgtcggcgcgtgtg 41152344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 21368714 - 21368809
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatcca 96  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |  ||||     ||||||||||||||||||||    
T  21368714 aaaattaatttacaacgaaataattgaggtccaattattaaaatgataagaatccggataaccgatcaaaaatgaacacgtgtccctatctatcca 21368809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 7827574 - 7827637
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaa 65  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  7827574 aaattaatttaaaacgaaataattgaggtccaattattaaaatgataagaattcggacaaccaa 7827637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 29951690 - 29951522
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||     
T  29951690 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgattagaatccggacaaccaattaaaacgcgccacgtgtccttatctatccaaaaa 29951591  T
Q  101 gcgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
     || ||||||||||||  | ||||| |  |||||||||||||||||||||||||||||||| ||||||||    
T  29951590 ccg-tttctctctccgagcctctgaccgttcacgcgccttgtcggcgcgtgtgatgcacgcgcccgtttt 29951522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 34328863 - 34329033
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||||| ||||| |||||||     
T  34328863 aaaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatccggacaaccaattaaaacgcgccatgtgtccttatctttccaaaat 34328962  T
Q  101 gcgttttctctctccg-ccttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgttttca 171  Q
    ||| |||||||||||| || ||||| |  ||||||||| |||||||||||||| ||||||| || |||||||    
T  34328963 gcg-tttctctctccgaccgtctgacctctcacgcgccctgtcggcgcgtgtgttgcacgcgccagttttca 34329033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 635144 - 635294
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||| || ||||     
T  635144 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgtgccacgtgtccttatctttcaaaaaa 635243  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgtgt 151  Q
     | ||||||||||||||  |||| ||  ||||||||| |||||||||||||    
T  635244 tcattttctctctccgcgctctgcacgctcacgcgccctgtcggcgcgtgt 635294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 17957961 - 17957793
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||||||||     
T  17957961 aaaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgcgccacgtgtcattatctatccaaaaa 17957862  T
Q  101 gcgttttctctctccgc-cttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
    |    |||||||||||| | |||||   ||||||||||||||| |||||||| | |||||| ||||||||    
T  17957861 g-tcattctctctccgcacgtctgacgcgtcacgcgccttgtctgcgcgtgtaacgcacgcgcccgtttt 17957793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 2503807 - 2503955
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||     
T  2503807 aaaattaatttacaacgaaataattgaggttaaattatgaaaatgataaaaatccggacaaccaattaaaacgtgccacgtgtccttatctatccaaaaa 2503906  T
Q  101 gcgttttctctctccgccttctgaacagtcacgcgccttgtcggcgcgt 149  Q
     | ||||||||||||||  |||| ||  ||||||||| |||||||||||    
T  2503907 tcattttctctctccgcgctctgcacgctcacgcgccctgtcggcgcgt 2503955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 6377091 - 6376924
Alignment:
Q  2 aaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaacg 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  ||||||||||||| |    
T  6377091 aaattaatttacaacgaaataattgaggtcaaattattaaaatgataagaatccggacagccaattaaaacgcgccacgtgtcattatctatccaaaaag 6376992  T
Q  102 cgttttctctctccgc-cttctgaacagtcacgcgccttgtcggcgcgtgtgatgcacgcacccgtttt 169  Q
        |||||||||||| | |||||   ||||||||||||||| |||||||| | |||||| ||||||||    
T  6376991 -tcattctctctccgcacgtctgacgcgtcacgcgccttgtctgcgcgtgtaacgcacgcgcccgtttt 6376924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 198284 - 198400
Alignment:
Q  1 aaaattaatttacaacgaaataaatgaggtcaaattattaaaatgataagaatccggacaaccaactaaaacgcgccacgtgtccctatctatccaaaac 100  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||     
T  198284 aaaattaatttacaacgaaataattgaggttaaattatgaaaatgataagaatcgggacaaccaattaaaacgtgccacgtgtccttatctatccaaaaa 198383  T
Q  101 gcgttttctctctccgc 117  Q
     | ||||||||||||||    
T  198384 tcattttctctctccgc 198400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 480 times since January 2019
Visitors: 6696