View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0913_low_8 (Length: 583)
Name: NF0913_low_8
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 51 - 575
Target Start/End: Complemental strand, 34353611 - 34353089
Alignment:
| Q |
51 |
aattatccttcaaaggctcatgacttgctaagtaatggcagtggtttgcagaattggagttggcggttaggtgagtgcagacagggtcagacaagtggtt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34353611 |
aattatccttcaaaggctcatgacttgctaagtaatggcggtggtttgcagaattggagttggcggttaggtgagtgctgacagggtcagacaagtggtt |
34353512 |
T |
|
| Q |
151 |
ataaaaaatatttcaatcatggaggtattcaaatggaaaatattatatttcactgtttcagtgctaattattattttaatctatcttttactatatttca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353511 |
ataaaaaatatttcaatcatggaggtattcaaat-------attatatttcactgtttcagtgctaattattattttaatctatcttttactatatttca |
34353419 |
T |
|
| Q |
251 |
atcatggtgtaatattaaaataaacaaacacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatctgag |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353418 |
atcatggtgtaatattaaaataaacaaacacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatctgag |
34353319 |
T |
|
| Q |
351 |
aattctcaacaagcaacaatggtttcttcctccttagtcaagtctttgtcttgtgcttttcgtgcctgccgtatcaaccactctttcagctccaccagga |
450 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34353318 |
aattctcaacaagcgacaatggtttcttcctccttagtgaagtctttgtcttgtgcttttcgtgcctgccgtatcagccactctttcagctccaccagga |
34353219 |
T |
|
| Q |
451 |
tcttttcgtcttccattgtctctgtcgaatcccaaactagcaatgatgatctcaatattgccgatgatattacacaggtcggtttcacactatttttgtt |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353218 |
tcttttcgtcttccattgtctctgtcgaatcccaaactagcaacgatgatctcaatattgccgatgatattacacaggtcggtttcacactatttttgtt |
34353119 |
T |
|
| Q |
551 |
ttgt-----tttgcttattttgtctgtgct |
575 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
34353118 |
ttgttttgttttgcttattttgtctgtgct |
34353089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 79 - 557
Target Start/End: Complemental strand, 34359207 - 34358735
Alignment:
| Q |
79 |
taagtaatggcagtggtttgcagaattggagttggcggttaggtgagtgcagacagggtcagacaagtggttataaaaaatatttcaatcatggaggtat |
178 |
Q |
| |
|
|||||| |||| |||||||| |||||| ||||||| ||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
34359207 |
taagtactggcggtggtttgtagaattcaagttggca-ttaggtgagagcagacagggccagaaaagtggttataaaaaatatttcaatcatggagggat |
34359109 |
T |
|
| Q |
179 |
tcaaatggaaaatattatatttcactgtttcagtgctaattattattttaatctatcttttactatatttcaatcatggtgtaatattaaaataaacaaa |
278 |
Q |
| |
|
|||||| ||||||||||||| | |||||| |||| ||||||||||||||||||||| || | ||||||||| |||||||||||||||||||| |
|
|
| T |
34359108 |
tcaaat-------attatatttcactatctcagtgttaatagatattttaatctatcttttactgtactgcaatcatggagtaatattaaaataaacaaa |
34359016 |
T |
|
| Q |
279 |
cacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatctgagaattctcaacaagcaacaatggtttctt |
378 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
34359015 |
cacaatcaaccatgatcttgtgcatttcgtgcgtgtaccttatcttcttttaacaatgttatgtgatctgagaattctcaacaaacaacaatggcttctt |
34358916 |
T |
|
| Q |
379 |
cctccttagtcaagtctttgtcttgtgcttttcgtgcctgccgtatcaaccactctttcagctccaccaggatcttttcgtcttccattgtctctgtcga |
478 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| ||| | |||||| |
|
|
| T |
34358915 |
cctccttagtcaagtctttgacttgtgctttgcgtgctggccgtatcagccactgtttcagctccaccaggatcttttcgtcttccactgtttatgtcga |
34358816 |
T |
|
| Q |
479 |
atcccaaactagcaatgatgatctcaatattgccgatgatattacacaggtcggtttc--acactatttttgttttgtttt |
557 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34358815 |
atcccaaactagcaacgatgttctcaatattgccgatgatattacacaggtcggtttcacacactatttttgttttgtttt |
34358735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 163 times since January 2019
Visitors: 6695