View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_80 (Length: 265)
Name: NF0913_low_80
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 23363062 - 23363264
Alignment:
| Q |
21 |
cacagaaccataacaatttgaaatttagacaatnnnnnnnncatgaaaatgcattttatgctattaaaatttgaatgagttgttttcatccaagaaacat |
120 |
Q |
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|||| |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
23363062 |
cacaaaaccataacaatttgaaatttacacaataaaaaaaacatgaaaatgcattttatggtattaaaatttgaatgagttgttttcctccaagaaacat |
23363161 |
T |
|
| Q |
121 |
gtgctatcgggcctattttcagcnnnnnnnnnnnnntccaaattgaattgcagcccatttcagacccggcccagctaaaaagtccaacccggctgaccct |
220 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23363162 |
gtgctatcgggcctattttcagcaaaaaaacaaaaatccaaattgaattgcagcccatttcagacccggcccagctaaaaagtccaacccggctgaccct |
23363261 |
T |
|
| Q |
221 |
ttt |
223 |
Q |
| |
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||| |
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| T |
23363262 |
ttt |
23363264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 24094115 - 24094273
Alignment:
| Q |
66 |
aaaatgcattttatgctattaaaa-tttgaatgagttgttttca-tccaagaaacatgtgctatcgggcctattttcagcnnnnnnnnnnnnntccaaat |
163 |
Q |
| |
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||||||||||||||| || ||||| ||||||| ||| | |||| ||||||||||||||||||||||||||||||| | | ||||| | |
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| T |
24094115 |
aaaatgcattttatggtactaaaaatttgaattagtagatttccctccaagaaacatgtgctatcgggcctattttaaacaaaaaaacaaaaatccaagt |
24094214 |
T |
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| Q |
164 |
tgaattgcagcccatttcagacccggcccagctaaaaagtccaacccggctgacccttt |
222 |
Q |
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| ||| ||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
24094215 |
taaatagcagcccatgtcaaacccggcccaactaaaaagtccaacccggctgacccttt |
24094273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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