View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_81 (Length: 260)
Name: NF0913_low_81
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_81 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8723546 - 8723315
Alignment:
| Q |
1 |
catggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtagtggttaactagctctt |
100 |
Q |
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| T |
8723546 |
catggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaagcaacttatttctaaggtagtgattaactagctctt |
8723447 |
T |
|
| Q |
101 |
cacctgttggacaaaatctgaatccaacataatgaagaatgggaggaaatgagggtgtcatttgtctgctaggctccccttcatcacacatcattgtatc |
200 |
Q |
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| T |
8723446 |
cacctgttggacaaaatctgaatccaacataatgaagaatgggaggaaatgagggtgtcatttgtctgctaggctccccttcatcacacatcattgtatc |
8723347 |
T |
|
| Q |
201 |
attttcctcttcgccttttatctcggcttttt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
8723346 |
attttcctcttcgccttttatctcggcttttt |
8723315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 8740197 - 8739965
Alignment:
| Q |
4 |
ggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtagtgg-ttaactagctcttca |
102 |
Q |
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| T |
8740197 |
ggttcgtacttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaggtatcttatttttaaggtagtacattaacaagctcttca |
8740098 |
T |
|
| Q |
103 |
cctgttggacaaaatctgaatccaa---cataatgaagaatgggaggaaatgagggtgtcatttgtctgctaggctccccttcatcacacatcattgtat |
199 |
Q |
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| T |
8740097 |
tctgtaggacagaatctaagtccaagaacaaaatcaatagttggaggaaaagaggttgtcatttgtctggaagactccccttcatcacacaccattgtat |
8739998 |
T |
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| Q |
200 |
cattttcctcttcgccttttatctcggcttttt |
232 |
Q |
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| T |
8739997 |
aattttcctcttcaccttttttctcggcatttt |
8739965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 8690849 - 8690724
Alignment:
| Q |
4 |
ggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtagtggttaactagctcttcac |
103 |
Q |
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| T |
8690849 |
ggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcat |
8690750 |
T |
|
| Q |
104 |
ctgttggacaaaatctgaatccaaca |
129 |
Q |
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| T |
8690749 |
ctgttggtcggaatctgaatccaaca |
8690724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 8705104 - 8704996
Alignment:
| Q |
21 |
atcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtagtggttaactagctcttcacctgttggacaaaatctg |
120 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| | || |||||||| || ||||||||| ||||||| | |||||| |
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| T |
8705104 |
atcaacttcagctataacattgtttacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctg |
8705005 |
T |
|
| Q |
121 |
aatccaaca |
129 |
Q |
| |
|
||||||||| |
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|
| T |
8705004 |
aatccaaca |
8704996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 8691387 - 8691326
Alignment:
| Q |
169 |
ctaggctccccttcatcacacatcattgtatcattttcctcttcgccttttatctcggcttt |
230 |
Q |
| |
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|||||||||||||||||||| |||||| ||||| |||||||||| ||||| |||| ||||| |
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| T |
8691387 |
ctaggctccccttcatcacatatcattctatcaatttcctcttcagcttttttctcagcttt |
8691326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 8722181 - 8722073
Alignment:
| Q |
21 |
atcaacttcagctataacattgtttacaatggcgtcataaccaagcaacttatttctaaggtagtggttaactagctcttcacctgttggacaaaatctg |
120 |
Q |
| |
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||||||||||||||| |||||||| |||| | |||| ||||| ||||| ||||| || |||| ||| || ||||||| | |||||||| |||||| |
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| T |
8722181 |
atcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagtagtttacaagctcttgatctgttggatggaatctg |
8722082 |
T |
|
| Q |
121 |
aatccaaca |
129 |
Q |
| |
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||||||||| |
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| T |
8722081 |
aatccaaca |
8722073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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