View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0913_low_85 (Length: 251)
Name: NF0913_low_85
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34038697 - 34038456
Alignment:
| Q |
1 |
ttaaacgaaaacatcctttcactgaaaaggagaaagaggaattaatggtaaagcaacaggatagtttgtttttgtgccttggattattactaaatttctt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34038697 |
ttaaacgaaaacatcctttcgctgaaaaggagaaagaggaattaatggtaaagcaacaggatagtttgtttttgtgccttggattattactaaatttctt |
34038598 |
T |
|
| Q |
101 |
ctaattgtagcataaataatgcaaattacctgttttgtattgcagtctcggactgttgtggcagagaatttacctgacgatcattcccatcaaaatcttc |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34038597 |
ctaattgtagcataaataatgcaaattacttgttttgtattgcagtctcggactgttgtggcagagaatttacctgacgatcattcccatcaaaatcttc |
34038498 |
T |
|
| Q |
201 |
agaaaatatttggcgtagttgggaggtggatttcctctctgc |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
34038497 |
agaaaatatttggcgtagttgggaggtggatttcctctctgc |
34038456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 30341724 - 30341927
Alignment:
| Q |
39 |
gaattaatggtaaagcaacaggatagtttgtttttgtgcct-tggattattactaaatttcttctaattgtagcataaataatgcaaattacct-gtttt |
136 |
Q |
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||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
30341724 |
gaattaatggtaaagcaacgtgatagtttgttttggttcctatggattattactaaatttcttctaattgtagcataaataatgcaaattactttgtttt |
30341823 |
T |
|
| Q |
137 |
gtattgcagtctcggactgttgtggcagagaatttacctgacgatcattcccatcaaaatcttcagaaaatatttggcgtagttgggaggtggatttcct |
236 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||| || |
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| T |
30341824 |
ttcttgcagtctcggactgttgtggcagagaatttacctgacgatcattcccatcaaaatcttcagaaaatatttgccatagtcgagaggtggatttact |
30341923 |
T |
|
| Q |
237 |
ctct |
240 |
Q |
| |
|
|||| |
|
|
| T |
30341924 |
ctct |
30341927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 18988041 - 18987838
Alignment:
| Q |
39 |
gaattaatggtaaagcaacaggatagtttgtttttgtgcct-tggattattactaaatttcttctaattgtagcataaataatgcaaattacct-gtttt |
136 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |
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| T |
18988041 |
gaattaatggtaaagcaacgtgatagtttgttttggttcctatggattattactaaatttcttcttattgtagcataaataatgcaaattattttgtttt |
18987942 |
T |
|
| Q |
137 |
gtattgcagtctcggactgttgtggcagagaatttacctgacgatcattcccatcaaaatcttcagaaaatatttggcgtagttgggaggtggatttcct |
236 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||| || |
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| T |
18987941 |
ttcttgcagtctcggactgttgtggcagagaatttacctgacgatcattcccatcaaaatcttcagaaaatatttgccatagtcgagaggtggatttact |
18987842 |
T |
|
| Q |
237 |
ctct |
240 |
Q |
| |
|
|||| |
|
|
| T |
18987841 |
ctct |
18987838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 23917482 - 23917685
Alignment:
| Q |
39 |
gaattaatggtaaagcaacaggatagtttgtttttgtgcct-tggattattactaaatttcttctaattgtagcataaataatgcaaattacct-gtttt |
136 |
Q |
| |
|
||||||||||||||||||| | |||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
23917482 |
gaattaatggtaaagcaacgtggtagtttcttttggttcctatggattattactaaatttcttctaattgtagcataaataatgcaaattaatttgtttt |
23917581 |
T |
|
| Q |
137 |
gtattgcagtctcggactgttgtggcagagaatttacctgacgatcattcccatcaaaatcttcagaaaatatttggcgtagttgggaggtggatttcct |
236 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||| || |
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| T |
23917582 |
ttcttgcagtctcggactgttgtggcagagaatttacctgacgatcattcccatcaaaatcttcagaaaatatttgccatagtcgagaggtggatttact |
23917681 |
T |
|
| Q |
237 |
ctct |
240 |
Q |
| |
|
|||| |
|
|
| T |
23917682 |
ctct |
23917685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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