View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0913_low_89 (Length: 235)

Name: NF0913_low_89
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0913_low_89
NF0913_low_89
[»] chr7 (9 HSPs)
chr7 (87-230)||(31166955-31167099)
chr7 (92-196)||(21971546-21971649)
chr7 (104-190)||(27595999-27596084)
chr7 (91-206)||(28750926-28751040)
chr7 (91-206)||(38916391-38916506)
chr7 (91-199)||(32741786-32741894)
chr7 (91-196)||(27230474-27230579)
chr7 (114-206)||(21972092-21972183)
chr7 (94-206)||(15577471-15577578)
[»] chr2 (8 HSPs)
chr2 (87-230)||(39865299-39865443)
chr2 (87-231)||(29770742-29770887)
chr2 (87-206)||(4329600-4329719)
chr2 (114-205)||(4330136-4330226)
chr2 (91-199)||(9074606-9074714)
chr2 (91-196)||(9914204-9914309)
chr2 (90-176)||(30674427-30674513)
chr2 (114-178)||(29771299-29771362)
[»] chr3 (6 HSPs)
chr3 (87-228)||(23566890-23567032)
chr3 (87-227)||(39737725-39737865)
chr3 (91-227)||(785769-785906)
chr3 (91-176)||(30385748-30385833)
chr3 (114-178)||(39737230-39737293)
chr3 (91-165)||(53153854-53153928)
[»] chr5 (4 HSPs)
chr5 (87-230)||(39121835-39121979)
chr5 (91-199)||(14393984-14394092)
chr5 (91-230)||(25672242-25672381)
chr5 (93-206)||(20983545-20983658)
[»] chr8 (5 HSPs)
chr8 (87-204)||(26759207-26759324)
chr8 (87-227)||(146615-146756)
chr8 (91-199)||(186683-186791)
chr8 (91-199)||(308313-308421)
chr8 (114-177)||(147190-147252)
[»] chr4 (11 HSPs)
chr4 (87-233)||(38147366-38147512)
chr4 (87-199)||(28103807-28103919)
chr4 (87-199)||(12639722-12639834)
chr4 (112-199)||(917685-917772)
chr4 (91-231)||(43012730-43012871)
chr4 (91-176)||(23643434-23643519)
chr4 (114-180)||(28104360-28104425)
chr4 (114-176)||(12639211-12639273)
chr4 (91-230)||(54714872-54715012)
chr4 (114-177)||(919115-919177)
chr4 (92-121)||(918651-918680)
[»] chr6 (4 HSPs)
chr6 (91-230)||(8700865-8701005)
chr6 (91-199)||(604986-605097)
chr6 (91-176)||(12307300-12307385)
chr6 (91-176)||(7727380-7727465)
[»] chr1 (1 HSPs)
chr1 (91-199)||(40888793-40888901)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 31166955 - 31167099
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  31166955 aagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactattt 31167054  T
Q  187 attgttccttatcgagtgcctc-ggagcactgattagcattgccc 230  Q
    ||||||||||||| |||||| | || |||||| ||||||||||||    
T  31167055 attgttccttatccagtgccccgggggcactggttagcattgccc 31167099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 21971649 - 21971546
Alignment:
Q  92 tattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattgt 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||    
T  21971649 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgagttaagtgagat-catttatttaattattatttattgt 21971551  T
Q  192 tcctt 196  Q
    |||||    
T  21971550 tcctt 21971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 27596084 - 27595999
Alignment:
Q  104 cttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||| |  ||||||||||    
T  27596084 cttttattatttttaattagttgac-tatattacactttaattgagatgaattaagtgagatccatttatttattggctatttattg 27595999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 28750926 - 28751040
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||| | ||||||| |||||||||||||| || | ||| ||||||||| || | || ||||||||||||| ||||||| |  ||||||||||    
T  28750926 atattgaatata-catttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattg 28751024  T
Q  191 ttccttatcgagtgcc 206  Q
    ||||||||| ||||||    
T  28751025 ttccttatccagtgcc 28751040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 38916391 - 38916506
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    ||||| |||||| | ||||||| |||||||||||||| || | ||| ||||||||| || | ||| |||||||||||| ||||||| |  ||||||||||    
T  38916391 atattaaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagatccatttatttattgtctatttattg 38916490  T
Q  191 ttccttatcgagtgcc 206  Q
    ||| ||||| ||||||    
T  38916491 ttctttatccagtgcc 38916506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 32741786 - 32741894
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||||| ||||||| |||||| ||||||| || | ||||||||||||| || | ||  |||||||||||| ||||||| |   |||||||||    
T  32741786 atattgaatatagcatttattaattttaaatagttgaaatattttatactttaattaaggtaaaccaagtgagatccatttatttattgcttatttattg 32741885  T
Q  191 ttccttatc 199  Q
    ||| |||||    
T  32741886 ttcattatc 32741894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 27230579 - 27230474
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||||| ||||||| |||||||||||||| || | ||| ||||||||| || | ||| || |||||| || ||||||| |  ||||| ||||    
T  27230579 atattgaatatagcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagattcatttatttattgtctattaattg 27230480  T
Q  191 ttcctt 196  Q
    ||||||    
T  27230479 ttcctt 27230474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 21972092 - 21972183
Alignment:
Q  114 ttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattgttccttatcgagtgcc 206  Q
    ||||||||||||||||| | ||| | ||||||| |||||||||||||||||| || |||||||||   | || ||||||||||||| ||||||    
T  21972092 ttttaattagttgacatattttaca-tttaattaagatgaattaagtgagattcatttatttaatgcattttaattgttccttatccagtgcc 21972183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 15577578 - 15577471
Alignment:
Q  94 ttgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattgttc 193  Q
    ||||||||| | ||||||| |||||||||||||| || | ||| ||||||||| || | || ||||||||||||| || | |     |||||||||||||    
T  15577578 ttgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttttgt-----ctatttattgttc 15577484  T
Q  194 cttatcgagtgcc 206  Q
    |||||| ||||||    
T  15577483 cttatccagtgcc 15577471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 39865299 - 39865443
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  39865299 aagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactattt 39865398  T
Q  187 attgttccttatcgagtgcctc-ggagcactgattagcattgccc 230  Q
    ||||||||||||| |||||| | || |||||| ||||||||||||    
T  39865399 attgttccttatccagtgccccgggggcactggttagcattgccc 39865443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 29770887 - 29770742
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| || |||||||||||||||||    
T  29770887 aagagtattgattatagcttttattatttttaattagttgacatatattatactttaactgagatgaattaagtgagattcatttatttaattactattt 29770788  T
Q  187 attgttccttatcgagtgcctcggag-cactgattagcattgccca 231  Q
    ||||||||||||| |||||| ||||| ||||| |||||||||||||    
T  29770787 attgttccttatccagtgccccggagacactggttagcattgccca 29770742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 4329719 - 4329600
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||| | |||||||    
T  4329719 aagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatctatttatttattaactattt 4329620  T
Q  187 attgttccttatcgagtgcc 206  Q
    | ||||||||||| ||||||    
T  4329619 actgttccttatccagtgcc 4329600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 4330136 - 4330226
Alignment:
Q  114 ttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattgttccttatcgagtgc 205  Q
    |||||||||||| |||| | ||| | ||||||||||||||||||||||||||||| |||||||||   |||| ||||||||||||| |||||    
T  4330136 ttttaattagttaacatattttaca-tttaattgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatccagtgc 4330226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 9074714 - 9074606
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||| | ||||||| |||||||||||||| || | ||| ||||||||| || | ||  |||||||||||| ||||||| |  ||||||||||    
T  9074714 atattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatccatttatttattgtctatttattg 9074615  T
Q  191 ttccttatc 199  Q
    ||| |||||    
T  9074614 ttctttatc 9074606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 9914309 - 9914204
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||||| ||||||| ||||| |||||||| || | ||| ||||||||| |  | ||| ||||||||| || ||||||| |  ||||||||||    
T  9914309 atattgaatatagcatttattaattttagttagttgaaatattttacactttaattaaagtaaatcaagtgagattcatttatttattacctatttattg 9914210  T
Q  191 ttcctt 196  Q
    ||||||    
T  9914209 ttcctt 9914204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 30674427 - 30674513
Alignment:
Q  90 aatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattattta 176  Q
    ||||||||||||| | ||||||| |||||||||||||| || | ||| | ||||||| |||| ||| |||||||||| | |||||||    
T  30674427 aatattgaatataacatttattaattttaattagttgaaatattttacattttaattaagataaatcaagtgagatctatttattta 30674513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 29771299 - 29771362
Alignment:
Q  114 ttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaat 178  Q
    ||||||||||||||||| | ||| | | |||||||||||||||||||||||| || |||||||||    
T  29771299 ttttaattagttgacatattttaca-tataattgagatgaattaagtgagattcatttatttaat 29771362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 87 - 228
Target Start/End: Original strand, 23566890 - 23567032
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  23566890 aagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgatattcatttatttaattactattt 23566989  T
Q  187 attgttccttatcgagtg-cctcggagcactgattagcattgc 228  Q
    ||||||||||||| |||| || |||||||| | ||||||||||    
T  23566990 attgttccttatccagtgcccccggagcaccggttagcattgc 23567032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 39737725 - 39737865
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||    
T  39737725 aagaatattgaatatagcttttattatttttaattagttaacatatattatattttaattgagatgaattaaataagatctatttatttaattactattt 39737824  T
Q  187 attgttccttatcgagtgcctcggagcactgattagcattg 227  Q
    ||||||||||||| |||||||| | |||| | |||||||||    
T  39737825 attgttccttatccagtgcctcagggcaccggttagcattg 39737865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 785769 - 785906
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    ||||||||||||||  |||||| ||||||||| |||  || | ||| ||||| ||| || | ||| |||||||||||| ||||||| |  ||||||| ||    
T  785769 atattgaatatagcaattattaattttaattaattgcaatattttacactttgattaaggtaaatcaagtgagatccatttatttattgcctatttaatg 785868  T
Q  191 ttccttatcgagtgcctc-ggagcactgattagcattg 227  Q
    ||||||||  ||||| || ||||||| | |||||||||    
T  785869 ttccttattcagtgcatcgggagcaccggttagcattg 785906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 30385748 - 30385833
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattattta 176  Q
    |||||||||||| | ||||||| |||||||||||||| || | ||| ||||||||| || | ||| || ||||||||| |||||||    
T  30385748 atattgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagatccatttattta 30385833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 39737293 - 39737230
Alignment:
Q  114 ttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaat 178  Q
    ||||||||||||||||| | ||| | ||||||||||||| |||||||||||| || |||||||||    
T  39737293 ttttaattagttgacatattttaca-tttaattgagatggattaagtgagattcatttatttaat 39737230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 53153854 - 53153928
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagat 165  Q
    |||||||||||| | ||||||| |||||||||||||| || | ||| ||||||||| || | ||| |||||||||    
T  53153854 atattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagat 53153928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 39121835 - 39121979
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    |||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| || |||||||||||||||||    
T  39121835 aagagtattgaatataacttttattatttttaattagttgacatatattatactttaattgagataaattaagtgagattcatttatttaattactattt 39121934  T
Q  187 attgttccttatcgagtgcctcggag-cactgattagcattgccc 230  Q
    ||||||||||||| |||||| ||||| ||| | ||||||||||||    
T  39121935 attgttccttatccagtgccccggagacaccggttagcattgccc 39121979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 14394092 - 14393984
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||||| |||||||  ||||||||||||| || | ||| | ||||||| |||| ||| |||||||||||| ||||||| |   |||||||||    
T  14394092 atattgaatatagcatttattaaatttaattagttgaaatattttacattttaattaagataaatcaagtgagatccatttatttattgcttatttattg 14393993  T
Q  191 ttccttatc 199  Q
    |||||||||    
T  14393992 ttccttatc 14393984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 25672381 - 25672242
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    ||||| |||||||| ||||||| |||||||||||||| || | ||| ||||||||| | || ||  |||||||||||| ||||||| |   |||| ||||    
T  25672381 atattaaatatagcatttattaattttaattagttgaaatattttacactttaattaatataaaccaagtgagatccatttatttattgcatattcattg 25672282  T
Q  191 ttccttatcgagtgcctcggagcactgattagcattgccc 230  Q
    |||||||||   |||| ||| |||| | ||||||||||||    
T  25672281 ttccttatccgatgccccggggcaccggttagcattgccc 25672242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 206
Target Start/End: Complemental strand, 20983658 - 20983545
Alignment:
Q  93 attgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattgtt 192  Q
    |||||||||| | ||||||| |||||||||||||| || | ||| ||||||||| || | ||  || ||||||||| ||||||| |  ||||||||| ||    
T  20983658 attgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattttt 20983559  T
Q  193 ccttatcgagtgcc 206  Q
     |||||| ||||||    
T  20983558 tcttatccagtgcc 20983545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 26759324 - 26759207
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    |||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26759324 aagagtatttaatatagcttttattatttttaattagttggcatatattatactttaattgagatgaattaagtgagatccatttatttaattactattt 26759225  T
Q  187 attgttccttatcgagtg 204  Q
    ||||||||||||| ||||    
T  26759224 attgttccttatccagtg 26759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 146756 - 146615
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    |||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||| |||||||||  ||||||    
T  146756 aagagtattgaatatagtttttattaattttaattagttgacatatattacactttaattgagattaataaagtgagatccatttatttaatggctattt 146657  T
Q  187 attgttccttatcgagtgcctcgga-gcactgattagcattg 227  Q
    ||||||| |||||  ||| | |||| |||| |||||||||||    
T  146656 attgttcattatcttgtgtcccggaggcaccgattagcattg 146615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 186791 - 186683
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||| | ||||||| |||||||||||||| || | ||| | ||||||| |||| ||| |||||||||||| ||||||| |  ||||||||||    
T  186791 atattgaatataacatttattaattttaattagttgaaatattttacaatttaattaagataaatcaagtgagatccatttatttattagctatttattg 186692  T
Q  191 ttccttatc 199  Q
    |||||||||    
T  186691 ttccttatc 186683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 308421 - 308313
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||| | ||||||| |||||||||||||| || | ||| ||||||||| || | || ||||||||||||| ||||||| |  ||||||||||    
T  308421 atattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattg 308322  T
Q  191 ttccttatc 199  Q
    ||| |||||    
T  308321 ttcattatc 308313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 147190 - 147252
Alignment:
Q  114 ttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaa 177  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||||||||||||||  |||||||    
T  147190 ttttaattagttgacatattttata-tttaattaagatgaattaagtgagatccatatatttaa 147252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 38147512 - 38147366
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  38147512 aagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttatttattgactattt 38147413  T
Q  187 attgttccttatcgagtgcctcggagcactgattagcattgcccaaa 233  Q
    | ||||||||||| ||||||    ||||| | |||||||||||||||    
T  38147412 actgttccttatccagtgcccgaaagcaccggttagcattgcccaaa 38147366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 28103919 - 28103807
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||| | |||||    
T  28103919 aagagtattgaatatagcttttattatttttaattagttgacatatattacactctaattgagatgaattaagtgagatccatttatttaatgattattt 28103820  T
Q  187 attgttccttatc 199  Q
    |||||||||||||    
T  28103819 attgttccttatc 28103807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 12639722 - 12639834
Alignment:
Q  87 aagaatattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattt 186  Q
    |||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||| ||||||| |  ||||||    
T  12639722 aagagtattgaatatagcttttattatttttaattagttgacatattttacactttaattgaggtgaattaagtgagatccatttatttattgcctattt 12639821  T
Q  187 attgttccttatc 199  Q
    |||||||||||||    
T  12639822 attgttccttatc 12639834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 917772 - 917685
Alignment:
Q  112 atttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattgttccttatc 199  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| | |||| || ||||||| | |||||||||||||| |||||    
T  917772 atttttaattagttgacatatattacactttaattgagatgaattaacttagattcatttatttattgactatttattgttctttatc 917685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 43012871 - 43012730
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||| | ||||||| |||||||||||||| || | ||| ||||||||| || | ||  || ||||||||| ||||||| |  ||||||||||    
T  43012871 atattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattg 43012772  T
Q  191 ttccttatcgagtgcctc-ggagcactgattagcattgccca 231  Q
    ||||||||| |||||| | || |||| | |||||||||||||    
T  43012771 ttccttatccagtgccccgggggcaccggttagcattgccca 43012730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 23643519 - 23643434
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattattta 176  Q
    |||||||||||||| ||||||| |||||||||||||| || | ||| ||||||||| |||| ||| |||||||||| | |||||||    
T  23643519 atattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatgaagtgagatcaatttattta 23643434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 28104360 - 28104425
Alignment:
Q  114 ttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaatta 180  Q
    |||||||||||||| || | ||| | ||||||||||||||||||||||||||||| |||||||||||    
T  28104360 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagatccatttatttaatta 28104425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 12639273 - 12639211
Alignment:
Q  114 ttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattattta 176  Q
    ||||||||||||||||| | ||| || ||||||||| | |||||||||||||||| |||||||    
T  12639273 ttttaattagttgacatattttacacattaattgaggtaaattaagtgagatccatttattta 12639211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 54714872 - 54715012
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||| | ||||||| ||||||||| || | || | ||| ||||||||| |||| ||| |||||| ||||| ||||||| |  |||||| ||     
T  54714872 atattgaatataacatttattaattttaattatttaaaatattttacactttaattaagataaatcaagtgaaatccatttatttattgcctatttttta 54714971  T
Q  191 ttccttatcgagtgcctcgga-gcactgattagcattgccc 230  Q
    ||| ||||| | |||| |||| |||| | ||||||||||||    
T  54714972 ttctttatccaatgccccggaggcaccggttagcattgccc 54715012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 919115 - 919177
Alignment:
Q  114 ttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaa 177  Q
    |||||||||||||| || | ||| | |||||||||||||||||||||||||| || ||||||||    
T  919115 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagattcatttatttaa 919177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 918680 - 918651
Alignment:
Q  92 tattgaatatagcttttattatttttaatt 121  Q
    ||||||||||||||||||||||||||||||    
T  918680 tattgaatatagcttttattatttttaatt 918651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 8701005 - 8700865
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||| | ||||||| |||||||||||| | || | ||| ||||||||| || | ||| ||||||||||||  |||||| |  ||||||||||    
T  8701005 atattgaatataacatttattaattttaattagttaaaatattttacactttaattaaggtaaatcaagtgagatccatctatttattgcctatttattg 8700906  T
Q  191 ttccttatcgagtgcctc-ggagcactgattagcattgccc 230  Q
    |||||||||  ||||||| ||||||| | ||||||||||||    
T  8700905 ttccttatccggtgcctcgggagcaccggttagcattgccc 8700865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 605097 - 604986
Alignment:
Q  91 atattgaatatagcttttattatttttaatta---gttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactattta 187  Q
    |||||||||||| | ||||||| |||||||||   ||||| || | ||||||||||||| || | ||| |||||||||||| ||||||| |  |||||||    
T  605097 atattgaatataacatttattaattttaattattagttgaaatattttatactttaattaaggtaaatcaagtgagatccatttatttattgcctattta 604998  T
Q  188 ttgttccttatc 199  Q
    ||||||||||||    
T  604997 ttgttccttatc 604986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 12307300 - 12307385
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattattta 176  Q
    |||||||||||| | ||||||| |||||||||||||| || | ||| ||||||||| |||| ||| |||||||||| | |||||||    
T  12307300 atattgaatataacatttattaattttaattagttgaaatattttacactttaattaagataaatcaagtgagatctatttattta 12307385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 7727380 - 7727465
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattattta 176  Q
    |||||||||||| | ||||||| |||||||||||||| || | ||| ||||||||| || | ||  |||||||||| | |||||||    
T  7727380 atattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatcaatttattta 7727465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 40888901 - 40888793
Alignment:
Q  91 atattgaatatagcttttattatttttaattagttgacatttattatactttaattgagatgaattaagtgagatccaattatttaattactatttattg 190  Q
    |||||||||||||| ||||||| |||||||||||||| || | ||| ||||||||| |||| ||| |||| ||||||| |||| || |  ||||| ||||    
T  40888901 atattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatcaagttagatccatttatgtattgcctattaattg 40888802  T
Q  191 ttccttatc 199  Q
    || ||||||    
T  40888801 tttcttatc 40888793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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