View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0913_low_99 (Length: 216)
Name: NF0913_low_99
Description: NF0913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0913_low_99 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 15381760 - 15381809
Alignment:
| Q |
4 |
tatccttatactacatcacttgccccctgaaatttccgacagtctctgct |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15381760 |
tatccttatactacatcacttgccccctgaaatttccgacagtctctgct |
15381809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 27105210 - 27105273
Alignment:
| Q |
145 |
atcaagaaaaactaaatgtttcaactctgtcagaaccgttactgccccgctacttagcctcctg |
208 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||| ||||| |
|
|
| T |
27105210 |
atcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccggtacttagcatcctg |
27105273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 27098211 - 27098255
Alignment:
| Q |
145 |
atcaagaaaaactaaatgtttcaactctgtcagaaccgttactgc |
189 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
27098211 |
atcaagaaaacctaaatgtttccactctgtcagaaccgttactgc |
27098255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 835 times since January 2019
Visitors: 6705