View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_high_15 (Length: 463)
Name: NF0914_high_15
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Original strand, 18844850 - 18845273
Alignment:
| Q |
9 |
agcataggttgaccgacatatataagtgaaattatcgatgtgttttagtcatcacaatgaataataat---ccttgattaacgcaagatctcaaccagtt |
105 |
Q |
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| T |
18844850 |
agcataggttgaccgacatatataagtgaaattatcaatgt--tttagtcatcacaatgaataataataatccttgattaacgcaagatctcaaccagtt |
18844947 |
T |
|
| Q |
106 |
atagattgtcttatccatttggtttcattctattattattaagtgcgtgcattccaaaacttagtaatagtttaatgtgataaaataatactataagcta |
205 |
Q |
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| T |
18844948 |
atagattgtcttatccatttggtttcattctatt---attaagtgcgtgcattccaaaacttagtaatagtttaatgtgataaaataatactataagcta |
18845044 |
T |
|
| Q |
206 |
ccaatacaaagtgtataagacaagaaaagcacatttgattcgtgacttattctttccattgcattg---accactgatttgtaagcatttctaaatcatg |
302 |
Q |
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| T |
18845045 |
ccaatacaaagtgtataagacaagaaaagcacatttgattcgtgacttattctttccattgcattgactactactgatttgtaagcatttctaaatcatg |
18845144 |
T |
|
| Q |
303 |
tgatggatattggatccccgtgactcttataaatacatgtttccatgaattattattaccctatggttgggtgattcatcctcatcactggtttggttaa |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18845145 |
tgatggatattggatccccgtgactcttataaatacatgtttccacga---attattaccctatggttgggtgattcatcctcatcactggtttggttaa |
18845241 |
T |
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| Q |
403 |
tgaatgtccaagggcatataggggcggatatg |
434 |
Q |
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| T |
18845242 |
tgaatgtccaagggcatataggggcggatatg |
18845273 |
T |
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