View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0914_high_17 (Length: 436)
Name: NF0914_high_17
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_high_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 100 - 408
Target Start/End: Original strand, 15903195 - 15903504
Alignment:
| Q |
100 |
aactctcttatagcttttgaaattttttattatttgaagcaatctaaaagtaagcataaaggttatgttggcatcaaattagacattgctaaagcttatg |
199 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15903195 |
aactctcttatagcttttgaaaattttcattatttgaagcaatctaaaagtaagcataaaggttatgttggcatcaaattagacattgctaaagcttata |
15903294 |
T |
|
| Q |
200 |
atagtttagagtgggactttattgaaaaatctctaactgccatgagttttcctacaaaaactattgccttaatcatgaagtgtattcagtcagtatcctt |
299 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15903295 |
atagtttatagtgggactttattgaaaaatctataactgccatgagttttcctacaaaaactattgccttaatcatgaagtgtattcagtcagtatcctt |
15903394 |
T |
|
| Q |
300 |
tgatattcttctcaatggtaaccctactggagttttctaccctcaaacaggcattaggcaaggagat-cccctttcttcctacctcttcatcatttgtgt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15903395 |
tgatattcttctcaatggtaaccctactggagttttctaccctcaaagaggcattaggcaaggagatccccctttcttcctacctcttcatcatttgtgt |
15903494 |
T |
|
| Q |
399 |
tgaacttctt |
408 |
Q |
| |
|
|||| ||||| |
|
|
| T |
15903495 |
tgaagttctt |
15903504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 15900181 - 15900260
Alignment:
| Q |
17 |
tggctaatagaattaaagttatcctacctagtattatgaatgagactcatagtgctttcctaactggcagattgatcact |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15900181 |
tggctaatagaattaaagttatcctacctagtattatgaatgagactcatagtgctttcctaactggcagattgatcact |
15900260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 41094024 - 41093962
Alignment:
| Q |
160 |
ggttatgttggcatcaaattagacattgctaaagcttatgatagtttagagtgggactttatt |
222 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||||||||| | | |||| ||| |||||||| |
|
|
| T |
41094024 |
ggttttgtgggcataaaattagacattgctaaagcttatgacattctagaatggaactttatt |
41093962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 734 times since January 2019
Visitors: 6696