View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_high_19 (Length: 430)
Name: NF0914_high_19
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 12 - 424
Target Start/End: Complemental strand, 32039581 - 32039171
Alignment:
| Q |
12 |
tgttttagacttctgttgtaat--gtttgtaaaatctcttccatctgttctcttcgagtttttcttttcctgtaattatattattgggttgattcagtgt |
109 |
Q |
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| T |
32039581 |
tgttttagacttctgttgtaatatgtttgtaaaatctcttccatctgttctcttcgtgttttt----tcctgtaattatattattgggttgattcagtgt |
32039486 |
T |
|
| Q |
110 |
aactaatattgtaaaattgagaggaatgcaagcaattgatacattcattaattgcatatgtctttcattattaagagatgctctgcttcgagatccatca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32039485 |
aactaatattgtaaaattgagaggaatgcaagcaatggatacattcattaattgcatgtgtctttcattattaagagatgctctgcttcgagatccatca |
32039386 |
T |
|
| Q |
210 |
aatattcacaagcttgtgccacccattttctgttgtaagtcgccaagttcatgtgtttgaatgtcatttaactattccagttgtgaaatgtctttaaatg |
309 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32039385 |
aatattcacaagcttgtgccacccattttctgctgtaagtcgccaagttcatgtgtttgaatgtcatttaactattccagttgtgaaatgtctttaaatg |
32039286 |
T |
|
| Q |
310 |
aagatataaattcttagtaggtccggggattatgctcagcaaatttattaaccgattatcttacaccatagaatcggttaaagatacgtaaagatagagg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32039285 |
aagatataaattcttagtaggtccggggattatgctcagcaaatttattaaccgattatcttacaccatagaatcggttaaagatacgtaaagatagagg |
32039186 |
T |
|
| Q |
410 |
tataagtataatcta |
424 |
Q |
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||||| ||||||||| |
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| T |
32039185 |
tataaatataatcta |
32039171 |
T |
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