View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_high_30 (Length: 365)
Name: NF0914_high_30
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 7210792 - 7210605
Alignment:
| Q |
30 |
aaagatttgaagaagccatgaaaggagaagaatcaaaacaagtgcatgaaacaaacagttagtatattctcttttaaaacaagagaggaaagaaaagaag |
129 |
Q |
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| T |
7210792 |
aaagatttgaagaagccatgaaaggagaagaatcaaa-caagtgcatgaaacaaacagttagtatattctcttttaaaacaagagaggaaagaaaagaaa |
7210694 |
T |
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| Q |
130 |
gattgaaaatagaaaagatgttagaggactagtttggttcttgaaaatagttacaaaacatgcttccttagtcaatgacaacataaacc |
218 |
Q |
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| T |
7210693 |
gattgaaaatagaaaagaggttagaggactagtttggttcttgaaaatagttacaaaacatgcttccttagtcaatgacaacataaacc |
7210605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 253 - 354
Target Start/End: Complemental strand, 7210562 - 7210461
Alignment:
| Q |
253 |
ttgaaacaaaatcaaaagtgtatgtcatgtttctcttaccttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttc |
352 |
Q |
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| T |
7210562 |
ttgaaacaaaatcaaaagtgtatgtcatgtttctcttaccttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttc |
7210463 |
T |
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| Q |
353 |
at |
354 |
Q |
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|| |
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| T |
7210462 |
at |
7210461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 4846977 - 4847041
Alignment:
| Q |
290 |
accttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttcat |
354 |
Q |
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| T |
4846977 |
accttgtcttcctttccttgtttgcccttccttcttgcaactgttatcccataaatgtgcttcat |
4847041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 47753161 - 47753097
Alignment:
| Q |
290 |
accttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttcat |
354 |
Q |
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| T |
47753161 |
accttgtcttccttttcttgtttgtccttccttcttgcaactgttatcccataaatgtgcttcat |
47753097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 53235921 - 53235986
Alignment:
| Q |
289 |
taccttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttcat |
354 |
Q |
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| T |
53235921 |
taccttgtcttcctttcctactttgtccttcccttctgcaactattgtcccatagatgtgcttcat |
53235986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 40189559 - 40189491
Alignment:
| Q |
286 |
tcttaccttgccttcctttccttgtttgcccttcttttctgcaactattatcccataaatgtgcttcat |
354 |
Q |
| |
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|||||||||| |||||||| || |||| |||||||| ||||||| || ||||||||||| ||||||| |
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| T |
40189559 |
tcttaccttgtcttccttttctgctttggccttctttcttgcaactgttgtcccataaatgagcttcat |
40189491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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