View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0914_high_37 (Length: 319)
Name: NF0914_high_37
Description: NF0914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0914_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 35383090 - 35383385
Alignment:
| Q |
30 |
aaaacaaagatatgactttagactactacaccaaaaaagttaagaattataaaagatatcacgttaaactagatggaaacttgagaaaaatagaacgaga |
129 |
Q |
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| T |
35383090 |
aaaacaaagatatgactttagactactacaccaaaaaagttaagaattataaaagatatcacgttaaactaaatggaaacttgagaaaaatagaacgaga |
35383189 |
T |
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| Q |
130 |
ataacatatatagcatagggaaccataca-----------------gacaagtacatcaatctttttaaaggtaataaaagatatcgagttaaaataaat |
212 |
Q |
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| T |
35383190 |
ataacatatatagcatagggaaccacacaacgaagacctgactttagacaactacaccaatttttttaaaggtaataaaagataccgcgttaaaataaat |
35383289 |
T |
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| Q |
213 |
agaaacacaagaacaatggaaagcgaaaaacatatataaaagaccgtttaaagcaagtcgcactagagaatccaatccgttaatcaatgtattcat |
308 |
Q |
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| T |
35383290 |
agaaacacaagaataatggaaagcgaaaaacatatataaaagaccgtttaaagcaagtcgcaccagagaatccaatccgttaatcaatgtattcat |
35383385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 35382847 - 35382971
Alignment:
| Q |
32 |
aacaaagatatgactttagactactacacc-aaaaaagttaagaattataaaagatatcacgttaaactagatggaaacttgagaaaaatagaacgagaa |
130 |
Q |
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||||||| ||||||||||||| |||| ||| |||||||| ||| | |||||||||| | ||||||| ||||| ||| |||||||||||||| |||| |
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| T |
35382847 |
aacaaagttatgactttagacaactataccaaaaaaagtcaaggacaataaaagataccgcgttaaaatagat---aacatgagaaaaatagaaaaagaa |
35382943 |
T |
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| Q |
131 |
taacatatatagcatagggaaccataca |
158 |
Q |
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| T |
35382944 |
tcacatatacagaagatggaaccataca |
35382971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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